RNA–Protein interactions for RNA: ENST00000494518.1

SKA1-205, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2

Gene SKA1, Length 746 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-205ENST00000494518 CD209Q9NNX6 404 aa16.09■□□□□ 0.17
SKA1-205ENST00000494518 HDAC9Q9UKV0 1011 aa16.09■□□□□ 0.17
SKA1-205ENST00000494518 PCDHAC2Q9Y5I4 1007 aa16.09■□□□□ 0.17
SKA1-205ENST00000494518 ANP32CO43423 234 aa16.08■□□□□ 0.16
SKA1-205ENST00000494518 PLIN1O60240 522 aa16.08■□□□□ 0.16
SKA1-205ENST00000494518 TBC1D8O95759 1140 aa16.08■□□□□ 0.16
SKA1-205ENST00000494518 NF2P35240 595 aa16.08■□□□□ 0.16
SKA1-205ENST00000494518 IFIT5Q13325 482 aaKnown RBP16.08■□□□□ 0.16
SKA1-205ENST00000494518 CERS5Q8N5B7 392 aa16.08■□□□□ 0.16
SKA1-205ENST00000494518 PTPN12Q05209 780 aaKnown RBP16.07■□□□□ 0.16
SKA1-205ENST00000494518 BEND3Q5T5X7 828 aa16.07■□□□□ 0.16
SKA1-205ENST00000494518 LMBR1LQ6UX01 489 aa16.07■□□□□ 0.16
SKA1-205ENST00000494518 APOBEC3FQ8IUX4 373 aaKnown RBP16.07■□□□□ 0.16
SKA1-205ENST00000494518 WDR63Q8IWG1 891 aa16.07■□□□□ 0.16
SKA1-205ENST00000494518 IRS2Q9Y4H2 1338 aa16.07■□□□□ 0.16
SKA1-205ENST00000494518 TAF7LQ5H9L4 462 aa16.06■□□□□ 0.16
SKA1-205ENST00000494518 CTU1Q7Z7A3 348 aaKnown RBP16.06■□□□□ 0.16
SKA1-205ENST00000494518 ZBED3Q96IU2 234 aaPredicted RBP16.06■□□□□ 0.16
SKA1-205ENST00000494518 ANGEL1Q9UNK9 670 aaKnown RBP16.06■□□□□ 0.16
SKA1-205ENST00000494518 AOX1Q06278 1338 aa16.05■□□□□ 0.16
SKA1-205ENST00000494518 CLRN2A0PK11 232 aa16.05■□□□□ 0.16
SKA1-205ENST00000494518 DLGAP5Q15398 846 aa16.05■□□□□ 0.16
SKA1-205ENST00000494518 SLC4A10Q6U841 1118 aa16.05■□□□□ 0.16
SKA1-205ENST00000494518 REM2Q8IYK8 340 aaPredicted RBP16.05■□□□□ 0.16
SKA1-205ENST00000494518 FAM9BQ8IZU0 186 aa16.05■□□□□ 0.16
SKA1-205ENST00000494518 GRM8O00222 908 aa16.04■□□□□ 0.16
SKA1-205ENST00000494518 ARMC9Q7Z3E5 817 aa16.04■□□□□ 0.16
SKA1-205ENST00000494518 ZNF804AQ7Z570 1209 aa16.04■□□□□ 0.16
SKA1-205ENST00000494518 ZNF296Q8WUU4 475 aaPredicted RBP16.04■□□□□ 0.16
SKA1-205ENST00000494518 CNNM1Q9NRU3 951 aa16.04■□□□□ 0.16
SKA1-205ENST00000494518 SSC5DA1L4H1 1573 aa16.04■□□□□ 0.16
SKA1-205ENST00000494518 OTOFQ9HC10 1997 aa16.04■□□□□ 0.16
SKA1-205ENST00000494518 ARAP2Q8WZ64 1704 aa16.03■□□□□ 0.16
SKA1-205ENST00000494518 CCDC57Q2TAC2 916 aa16.03■□□□□ 0.16
SKA1-205ENST00000494518 CFAP100Q494V2 611 aa16.03■□□□□ 0.16
SKA1-205ENST00000494518 LDHAL6AQ6ZMR3 332 aa16.03■□□□□ 0.16
SKA1-205ENST00000494518 DEFB129Q9H1M3 183 aa16.03■□□□□ 0.16
SKA1-205ENST00000494518 VEZTQ9HBM0 779 aa16.03■□□□□ 0.16
SKA1-205ENST00000494518 C9orf78Q9NZ63 289 aaPredicted RBP16.03■□□□□ 0.16
SKA1-205ENST00000494518 RBM5P52756 815 aaKnown RBP eCLIP16.02■□□□□ 0.16
SKA1-205ENST00000494518 C15orf52Q6ZUT6 534 aaKnown RBP16.02■□□□□ 0.16
SKA1-205ENST00000494518 R3HDMLQ9H3Y0 253 aa16.02■□□□□ 0.16
SKA1-205ENST00000494518 IL1R1P14778 569 aa16.01■□□□□ 0.15
SKA1-205ENST00000494518 TM4SF4P48230 202 aa16.01■□□□□ 0.15
SKA1-205ENST00000494518 SUCLG2Q96I99 432 aa16.01■□□□□ 0.15
SKA1-205ENST00000494518 CLMNQ96JQ2 1002 aa16.01■□□□□ 0.15
SKA1-205ENST00000494518 PRMT6Q96LA8 375 aaPredicted RBP16.01■□□□□ 0.15
SKA1-205ENST00000494518 PUS3Q9BZE2 481 aaKnown RBP16.01■□□□□ 0.15
SKA1-205ENST00000494518 HPS5Q9UPZ3 1129 aa16.01■□□□□ 0.15
SKA1-205ENST00000494518 COL1A1P02452 1464 aaPredicted RBP16.01■□□□□ 0.15
SKA1-205ENST00000494518 ZNF316A6NFI3 1004 aaPredicted RBP16■□□□□ 0.15
SKA1-205ENST00000494518 SPDYE2BA6NHP3 402 aa16■□□□□ 0.15
SKA1-205ENST00000494518 GPR25O00155 361 aa16■□□□□ 0.15
SKA1-205ENST00000494518 SPDYE6P0CI01 402 aa16■□□□□ 0.15
SKA1-205ENST00000494518 GYG1P46976 350 aa16■□□□□ 0.15
SKA1-205ENST00000494518 MMP14P50281 582 aa16■□□□□ 0.15
SKA1-205ENST00000494518 SREBF2Q12772 1141 aa16■□□□□ 0.15
SKA1-205ENST00000494518 LDLRAD1Q5T700 205 aa16■□□□□ 0.15
SKA1-205ENST00000494518 SPRYD7Q5W111 196 aa16■□□□□ 0.15
SKA1-205ENST00000494518 SRCIN1Q9C0H9 1055 aa16■□□□□ 0.15
SKA1-205ENST00000494518 NBPF12Q5TAG4 269 aaPredicted RBP15.99■□□□□ 0.15
SKA1-205ENST00000494518 MTMR14Q8NCE2 650 aa15.99■□□□□ 0.15
SKA1-205ENST00000494518 LAMB1P07942 1786 aa15.99■□□□□ 0.15
SKA1-205ENST00000494518 MYH13Q9UKX3 1938 aa15.98■□□□□ 0.15
SKA1-205ENST00000494518 MYO1BO43795 1136 aa15.98■□□□□ 0.15
SKA1-205ENST00000494518 ALDH1L1O75891 902 aa15.98■□□□□ 0.15
SKA1-205ENST00000494518 NBPF7P0C2Y1 421 aaPredicted RBP15.98■□□□□ 0.15
SKA1-205ENST00000494518 SLC10A4Q96EP9 437 aa15.98■□□□□ 0.15
SKA1-205ENST00000494518 KAZALD1Q96I82 304 aa15.98■□□□□ 0.15
SKA1-205ENST00000494518 IQSEC3Q9UPP2 1182 aaPredicted RBP15.98■□□□□ 0.15
SKA1-205ENST00000494518 PPP1R12BO60237 982 aaPredicted RBP15.97■□□□□ 0.15
SKA1-205ENST00000494518 MFSD14BQ5SR56 506 aa15.97■□□□□ 0.15
SKA1-205ENST00000494518 WNK4Q96J92 1243 aa15.97■□□□□ 0.15
SKA1-205ENST00000494518 TTF2Q9UNY4 1162 aaKnown RBP15.97■□□□□ 0.15
SKA1-205ENST00000494518 FKTNO75072 461 aa15.96■□□□□ 0.15
SKA1-205ENST00000494518 HIBADHP31937 336 aaKnown RBP15.96■□□□□ 0.15
SKA1-205ENST00000494518 FKBP1AP62942 108 aaKnown RBP15.96■□□□□ 0.15
SKA1-205ENST00000494518 RASA3Q14644 834 aa15.96■□□□□ 0.15
SKA1-205ENST00000494518 CDAN1Q8IWY9 1227 aa15.96■□□□□ 0.15
SKA1-205ENST00000494518 FAM84BQ96KN1 310 aaPredicted RBP15.96■□□□□ 0.15
SKA1-205ENST00000494518 BICC1Q9H694 974 aaKnown RBP15.96■□□□□ 0.15
SKA1-205ENST00000494518 PPP2R3BQ9Y5P8 575 aa15.96■□□□□ 0.15
SKA1-205ENST00000494518 FAM205AQ6ZU69 1335 aa15.95■□□□□ 0.14
SKA1-205ENST00000494518 HTTP42858 3142 aa15.95■□□□□ 0.14
SKA1-205ENST00000494518 IGF2BP3O00425 579 aaKnown RBP eCLIP15.95■□□□□ 0.14
SKA1-205ENST00000494518 ABCB7O75027 752 aa15.95■□□□□ 0.14
SKA1-205ENST00000494518 GJA5P36382 358 aa15.95■□□□□ 0.14
SKA1-205ENST00000494518 CHAF1AQ13111 956 aaPredicted RBP15.95■□□□□ 0.14
SKA1-205ENST00000494518 UBE4AQ14139 1066 aa15.95■□□□□ 0.14
SKA1-205ENST00000494518 GRIK5Q16478 980 aa15.95■□□□□ 0.14
SKA1-205ENST00000494518 TDRD7Q8NHU6 1098 aaKnown RBP15.95■□□□□ 0.14
SKA1-205ENST00000494518 TDRD3Q9H7E2 651 aaKnown RBP15.95■□□□□ 0.14
SKA1-205ENST00000494518 CENPFP49454 3210 aa15.95■□□□□ 0.14
SKA1-205ENST00000494518 KIAA0100Q14667 2235 aaKnown RBP15.95■□□□□ 0.14
SKA1-205ENST00000494518 MANSC4A6NHS7 340 aaPredicted RBP15.94■□□□□ 0.14
SKA1-205ENST00000494518 USP2O75604 605 aaPredicted RBP15.94■□□□□ 0.14
SKA1-205ENST00000494518 SLC34A2O95436 690 aa15.94■□□□□ 0.14
SKA1-205ENST00000494518 IREB2P48200 963 aaKnown RBP15.94■□□□□ 0.14
SKA1-205ENST00000494518 PKN2Q16513 984 aaKnown RBP15.94■□□□□ 0.14
SKA1-205ENST00000494518 MAP3K11Q16584 847 aa15.94■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms