RNA–Protein interactions for RNA: ENST00000491233.1

COL6A3-211, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 3

Gene COL6A3, Length 652 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-211ENST00000491233 NF2P35240 595 aa17.22■□□□□ 0.35
COL6A3-211ENST00000491233 TTLL12Q14166 644 aaPredicted RBP17.22■□□□□ 0.35
COL6A3-211ENST00000491233 SAGE1Q9NXZ1 904 aa17.22■□□□□ 0.35
COL6A3-211ENST00000491233 PTPRCP08575 1304 aa17.21■□□□□ 0.35
COL6A3-211ENST00000491233 F8W031 263 aaPredicted RBP17.21■□□□□ 0.35
COL6A3-211ENST00000491233 DLGAP5Q15398 846 aa17.21■□□□□ 0.35
COL6A3-211ENST00000491233 SSH1Q8WYL5 1049 aa17.21■□□□□ 0.35
COL6A3-211ENST00000491233 PUS3Q9BZE2 481 aaKnown RBP17.21■□□□□ 0.35
COL6A3-211ENST00000491233 SLFN5Q08AF3 891 aa17.2■□□□□ 0.34
COL6A3-211ENST00000491233 CSRNP1Q96S65 589 aa17.2■□□□□ 0.34
COL6A3-211ENST00000491233 MCOLN1Q9GZU1 580 aa17.2■□□□□ 0.34
COL6A3-211ENST00000491233 BICC1Q9H694 974 aaKnown RBP17.2■□□□□ 0.34
COL6A3-211ENST00000491233 RNF186Q9NXI6 227 aa17.2■□□□□ 0.34
COL6A3-211ENST00000491233 PCDHAC2Q9Y5I4 1007 aa17.2■□□□□ 0.34
COL6A3-211ENST00000491233 MYH13Q9UKX3 1938 aa17.19■□□□□ 0.34
COL6A3-211ENST00000491233 TRPA1O75762 1119 aa17.19■□□□□ 0.34
COL6A3-211ENST00000491233 FKBP1AP62942 108 aaKnown RBP17.19■□□□□ 0.34
COL6A3-211ENST00000491233 DGKZQ13574 1117 aa17.19■□□□□ 0.34
COL6A3-211ENST00000491233 UBE4AQ14139 1066 aa17.19■□□□□ 0.34
COL6A3-211ENST00000491233 RABL6Q3YEC7 729 aaPredicted RBP17.19■□□□□ 0.34
COL6A3-211ENST00000491233 ANKRD44Q8N8A2 993 aa17.19■□□□□ 0.34
COL6A3-211ENST00000491233 SSC5DA1L4H1 1573 aa17.19■□□□□ 0.34
COL6A3-211ENST00000491233 GYG1P46976 350 aa17.18■□□□□ 0.34
COL6A3-211ENST00000491233 PRKG1Q13976 671 aa17.18■□□□□ 0.34
COL6A3-211ENST00000491233 CFAP100Q494V2 611 aa17.18■□□□□ 0.34
COL6A3-211ENST00000491233 REM2Q8IYK8 340 aaPredicted RBP17.18■□□□□ 0.34
COL6A3-211ENST00000491233 MTMR14Q8NCE2 650 aa17.18■□□□□ 0.34
COL6A3-211ENST00000491233 FAM205AQ6ZU69 1335 aa17.18■□□□□ 0.34
COL6A3-211ENST00000491233 MROH5Q6ZUA9 1318 aa17.18■□□□□ 0.34
COL6A3-211ENST00000491233 LAMB1P07942 1786 aa17.17■□□□□ 0.34
COL6A3-211ENST00000491233 CCDC85CA6NKD9 419 aa17.17■□□□□ 0.34
COL6A3-211ENST00000491233 ARMC9Q7Z3E5 817 aa17.17■□□□□ 0.34
COL6A3-211ENST00000491233 CDCA7LQ96GN5 454 aa17.17■□□□□ 0.34
COL6A3-211ENST00000491233 RIPOR2Q9Y4F9 1068 aa17.17■□□□□ 0.34
COL6A3-211ENST00000491233 AOX1Q06278 1338 aa17.17■□□□□ 0.34
COL6A3-211ENST00000491233 OTOFQ9HC10 1997 aa17.17■□□□□ 0.34
COL6A3-211ENST00000491233 CLRN2A0PK11 232 aa17.16■□□□□ 0.34
COL6A3-211ENST00000491233 SPDYE2BA6NHP3 402 aa17.16■□□□□ 0.34
COL6A3-211ENST00000491233 SPDYE6P0CI01 402 aa17.16■□□□□ 0.34
COL6A3-211ENST00000491233 HIBADHP31937 336 aaKnown RBP17.16■□□□□ 0.34
COL6A3-211ENST00000491233 ALDH1L2Q3SY69 923 aa17.16■□□□□ 0.34
COL6A3-211ENST00000491233 LRRC24Q50LG9 513 aa17.16■□□□□ 0.34
COL6A3-211ENST00000491233 TDRD7Q8NHU6 1098 aaKnown RBP17.16■□□□□ 0.34
COL6A3-211ENST00000491233 DEFB129Q9H1M3 183 aa17.16■□□□□ 0.34
COL6A3-211ENST00000491233 SMC4Q9NTJ3 1288 aa17.16■□□□□ 0.34
COL6A3-211ENST00000491233 MYO1BO43795 1136 aa17.15■□□□□ 0.34
COL6A3-211ENST00000491233 PTPN12Q05209 780 aaKnown RBP17.15■□□□□ 0.34
COL6A3-211ENST00000491233 MKRN3Q13064 507 aaKnown RBP17.15■□□□□ 0.34
COL6A3-211ENST00000491233 METTL24Q5JXM2 366 aa17.15■□□□□ 0.34
COL6A3-211ENST00000491233 MFSD14BQ5SR56 506 aa17.15■□□□□ 0.34
COL6A3-211ENST00000491233 FAM84BQ96KN1 310 aaPredicted RBP17.15■□□□□ 0.34
COL6A3-211ENST00000491233 PRMT6Q96LA8 375 aaPredicted RBP17.15■□□□□ 0.34
COL6A3-211ENST00000491233 VEZTQ9HBM0 779 aa17.15■□□□□ 0.34
COL6A3-211ENST00000491233 ANGEL1Q9UNK9 670 aaKnown RBP17.15■□□□□ 0.34
COL6A3-211ENST00000491233 FZD1Q9UP38 647 aa17.15■□□□□ 0.34
COL6A3-211ENST00000491233 RBM5P52756 815 aaKnown RBP eCLIP17.14■□□□□ 0.33
COL6A3-211ENST00000491233 KLHDC4Q8TBB5 520 aa17.14■□□□□ 0.33
COL6A3-211ENST00000491233 USP44Q9H0E7 712 aa17.14■□□□□ 0.33
COL6A3-211ENST00000491233 TTF2Q9UNY4 1162 aaKnown RBP17.14■□□□□ 0.33
COL6A3-211ENST00000491233 PPP2R3BQ9Y5P8 575 aa17.14■□□□□ 0.33
COL6A3-211ENST00000491233 LDLRAD1Q5T700 205 aa17.13■□□□□ 0.33
COL6A3-211ENST00000491233 VGLL2Q8N8G2 317 aa17.13■□□□□ 0.33
COL6A3-211ENST00000491233 IQSEC3Q9UPP2 1182 aaPredicted RBP17.13■□□□□ 0.33
COL6A3-211ENST00000491233 VPS37DQ86XT2 251 aa17.12■□□□□ 0.33
COL6A3-211ENST00000491233 TRMT2AQ8IZ69 625 aaKnown RBP17.12■□□□□ 0.33
COL6A3-211ENST00000491233 PDE8BO95263 885 aa17.11■□□□□ 0.33
COL6A3-211ENST00000491233 CHAF1AQ13111 956 aaPredicted RBP17.11■□□□□ 0.33
COL6A3-211ENST00000491233 FBXO33Q7Z6M2 555 aa17.11■□□□□ 0.33
COL6A3-211ENST00000491233 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.11■□□□□ 0.33
COL6A3-211ENST00000491233 SERPINA10Q9UK55 444 aa17.11■□□□□ 0.33
COL6A3-211ENST00000491233 PPP1R12BO60237 982 aaPredicted RBP17.1■□□□□ 0.33
COL6A3-211ENST00000491233 TBC1D8O95759 1140 aa17.1■□□□□ 0.33
COL6A3-211ENST00000491233 TM4SF4P48230 202 aa17.1■□□□□ 0.33
COL6A3-211ENST00000491233 SREBF2Q12772 1141 aa17.1■□□□□ 0.33
COL6A3-211ENST00000491233 RASA3Q14644 834 aa17.1■□□□□ 0.33
COL6A3-211ENST00000491233 GRIK5Q16478 980 aa17.1■□□□□ 0.33
COL6A3-211ENST00000491233 MAP3K11Q16584 847 aa17.1■□□□□ 0.33
COL6A3-211ENST00000491233 SPDYE2Q495Y8 402 aa17.1■□□□□ 0.33
COL6A3-211ENST00000491233 CAVIN4Q5BKX8 364 aa17.1■□□□□ 0.33
COL6A3-211ENST00000491233 NBPF12Q5TAG4 269 aaPredicted RBP17.1■□□□□ 0.33
COL6A3-211ENST00000491233 SPRYD7Q5W111 196 aa17.1■□□□□ 0.33
COL6A3-211ENST00000491233 CCER2I3L3R5 266 aa17.09■□□□□ 0.33
COL6A3-211ENST00000491233 FRAT2O75474 233 aaPredicted RBP17.09■□□□□ 0.33
COL6A3-211ENST00000491233 CT47B1P0C2W7 299 aaPredicted RBP17.09■□□□□ 0.33
COL6A3-211ENST00000491233 CRKP46108 304 aa17.09■□□□□ 0.33
COL6A3-211ENST00000491233 RFX5P48382 616 aaPredicted RBP17.09■□□□□ 0.33
COL6A3-211ENST00000491233 TNFAIP1Q13829 316 aa17.09■□□□□ 0.33
COL6A3-211ENST00000491233 SUPT20HL1Q3ZLR7 823 aa17.09■□□□□ 0.33
COL6A3-211ENST00000491233 CLMNQ96JQ2 1002 aa17.09■□□□□ 0.33
COL6A3-211ENST00000491233 TDRD3Q9H7E2 651 aaKnown RBP17.09■□□□□ 0.33
COL6A3-211ENST00000491233 ZNF70Q9UC06 446 aaPredicted RBP17.09■□□□□ 0.33
COL6A3-211ENST00000491233 EYA2O00167 538 aa17.08■□□□□ 0.32
COL6A3-211ENST00000491233 UBTFL1P0CB47 393 aaPredicted RBP17.08■□□□□ 0.32
COL6A3-211ENST00000491233 PUM3Q15397 648 aaKnown RBP17.08■□□□□ 0.32
COL6A3-211ENST00000491233 CTU1Q7Z7A3 348 aaKnown RBP17.08■□□□□ 0.32
COL6A3-211ENST00000491233 DZIP1LQ8IYY4 767 aaKnown RBP17.08■□□□□ 0.32
COL6A3-211ENST00000491233 TBC1D22AQ8WUA7 517 aa17.08■□□□□ 0.32
COL6A3-211ENST00000491233 WNK4Q96J92 1243 aa17.08■□□□□ 0.32
COL6A3-211ENST00000491233 NOB1Q9ULX3 412 aaKnown RBP17.08■□□□□ 0.32
COL6A3-211ENST00000491233 KIF16BQ96L93 1317 aa17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms