RNA–Protein interactions for RNA: ENST00000490193.5

USP39-216, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 1,028 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-216ENST00000490193 LDLRAD1Q5T700 205 aa10.58□□□□□ -0.72
USP39-216ENST00000490193 PRAMEF18Q5VWM3 479 aa10.58□□□□□ -0.72
USP39-216ENST00000490193 APOBEC3FQ8IUX4 373 aaKnown RBP10.58□□□□□ -0.72
USP39-216ENST00000490193 CDAN1Q8IWY9 1227 aa10.58□□□□□ -0.72
USP39-216ENST00000490193 TTLL11Q8NHH1 800 aa10.58□□□□□ -0.72
USP39-216ENST00000490193 ZBED3Q96IU2 234 aaPredicted RBP10.58□□□□□ -0.72
USP39-216ENST00000490193 CCDC85AQ96PX6 553 aaPredicted RBP10.58□□□□□ -0.72
USP39-216ENST00000490193 CHMP4AQ9BY43 222 aa10.58□□□□□ -0.72
USP39-216ENST00000490193 ADAMTS8Q9UP79 889 aa10.58□□□□□ -0.72
USP39-216ENST00000490193 SCAF8Q9UPN6 1271 aaKnown RBP10.58□□□□□ -0.72
USP39-216ENST00000490193 ALDH1A1P00352 501 aa10.57□□□□□ -0.72
USP39-216ENST00000490193 IGKV5-2P06315 115 aa10.57□□□□□ -0.72
USP39-216ENST00000490193 PTPN12Q05209 780 aaKnown RBP10.57□□□□□ -0.72
USP39-216ENST00000490193 CALD1Q05682 793 aaKnown RBP10.57□□□□□ -0.72
USP39-216ENST00000490193 TTLL12Q14166 644 aaPredicted RBP10.57□□□□□ -0.72
USP39-216ENST00000490193 ARMC9Q7Z3E5 817 aa10.57□□□□□ -0.72
USP39-216ENST00000490193 RASEFQ8IZ41 740 aa10.57□□□□□ -0.72
USP39-216ENST00000490193 GCC1Q96CN9 775 aa10.57□□□□□ -0.72
USP39-216ENST00000490193 LEMD3Q9Y2U8 911 aa10.57□□□□□ -0.72
USP39-216ENST00000490193 CENPFP49454 3210 aa10.57□□□□□ -0.72
USP39-216ENST00000490193 SASH1O94885 1247 aa10.56□□□□□ -0.72
USP39-216ENST00000490193 INHBEP58166 350 aa10.56□□□□□ -0.72
USP39-216ENST00000490193 MAP3K11Q16584 847 aa10.56□□□□□ -0.72
USP39-216ENST00000490193 CCDC30Q5VVM6 783 aa10.56□□□□□ -0.72
USP39-216ENST00000490193 SPRYD7Q5W111 196 aa10.56□□□□□ -0.72
USP39-216ENST00000490193 TXNRD3Q86VQ6 643 aa10.56□□□□□ -0.72
USP39-216ENST00000490193 JARID2Q92833 1246 aaPredicted RBP10.56□□□□□ -0.72
USP39-216ENST00000490193 MXD3Q9BW11 206 aa10.56□□□□□ -0.72
USP39-216ENST00000490193 GREM2Q9H772 168 aa10.56□□□□□ -0.72
USP39-216ENST00000490193 MAP3K2Q9Y2U5 619 aa10.56□□□□□ -0.72
USP39-216ENST00000490193 UNCXA6NJT0 531 aa10.55□□□□□ -0.72
USP39-216ENST00000490193 ELL2O00472 640 aaPredicted RBP10.55□□□□□ -0.72
USP39-216ENST00000490193 ZBTB48P10074 688 aaPredicted RBP10.55□□□□□ -0.72
USP39-216ENST00000490193 KSR2Q6VAB6 950 aa10.55□□□□□ -0.72
USP39-216ENST00000490193 MIER1Q8N108 512 aa10.55□□□□□ -0.72
USP39-216ENST00000490193 C8orf58Q8NAV2 365 aa10.55□□□□□ -0.72
USP39-216ENST00000490193 MTMR14Q8NCE2 650 aa10.55□□□□□ -0.72
USP39-216ENST00000490193 R3HDMLQ9H3Y0 253 aa10.55□□□□□ -0.72
USP39-216ENST00000490193 CACNA1FO60840 1977 aa10.55□□□□□ -0.72
USP39-216ENST00000490193 SSC5DA1L4H1 1573 aa10.55□□□□□ -0.72
USP39-216ENST00000490193 PI4KAP2A4QPH2 592 aa10.54□□□□□ -0.72
USP39-216ENST00000490193 MANSC4A6NHS7 340 aaPredicted RBP10.54□□□□□ -0.72
USP39-216ENST00000490193 MKRN3Q13064 507 aaKnown RBP10.54□□□□□ -0.72
USP39-216ENST00000490193 HABP4Q5JVS0 413 aaKnown RBP10.54□□□□□ -0.72
USP39-216ENST00000490193 INTS3Q68E01 1043 aaKnown RBP10.54□□□□□ -0.72
USP39-216ENST00000490193 TTLL5Q6EMB2 1281 aa10.54□□□□□ -0.72
USP39-216ENST00000490193 PI4KAP1Q8N8J0 262 aa10.54□□□□□ -0.72
USP39-216ENST00000490193 PLA2G12BQ9BX93 195 aa10.54□□□□□ -0.72
USP39-216ENST00000490193 ANKRD2Q9GZV1 360 aa10.54□□□□□ -0.72
USP39-216ENST00000490193 ANGEL1Q9UNK9 670 aaKnown RBP10.54□□□□□ -0.72
USP39-216ENST00000490193 PPP2R3BQ9Y5P8 575 aa10.54□□□□□ -0.72
USP39-216ENST00000490193 BRCA2P51587 3418 aa10.54□□□□□ -0.72
USP39-216ENST00000490193 ZNF804BA4D1E1 1349 aa10.54□□□□□ -0.72
USP39-216ENST00000490193 OTOFQ9HC10 1997 aa10.54□□□□□ -0.72
USP39-216ENST00000490193 NEURL1BA8MQ27 555 aa10.53□□□□□ -0.72
USP39-216ENST00000490193 H7C1W4 665 aa10.53□□□□□ -0.72
USP39-216ENST00000490193 IGHMBP2P38935 993 aaKnown RBP10.53□□□□□ -0.72
USP39-216ENST00000490193 NEXNQ0ZGT2 675 aa10.53□□□□□ -0.72
USP39-216ENST00000490193 C15orf52Q6ZUT6 534 aaKnown RBP10.53□□□□□ -0.72
USP39-216ENST00000490193 OTOP1Q7RTM1 612 aa10.53□□□□□ -0.72
USP39-216ENST00000490193 IFNL1Q8IU54 200 aa10.53□□□□□ -0.72
USP39-216ENST00000490193 KIAA0825Q8IV33 1275 aa10.53□□□□□ -0.72
USP39-216ENST00000490193 FBXW7Q969H0 707 aa10.53□□□□□ -0.72
USP39-216ENST00000490193 DEFB129Q9H1M3 183 aa10.53□□□□□ -0.72
USP39-216ENST00000490193 IRS2Q9Y4H2 1338 aa10.53□□□□□ -0.72
USP39-216ENST00000490193 APAF1O14727 1248 aa10.52□□□□□ -0.73
USP39-216ENST00000490193 CSF1RP07333 972 aa10.52□□□□□ -0.73
USP39-216ENST00000490193 KLRK1P26718 216 aa10.52□□□□□ -0.73
USP39-216ENST00000490193 CASP7P55210 303 aa10.52□□□□□ -0.73
USP39-216ENST00000490193 GTF2IP78347 998 aa10.52□□□□□ -0.73
USP39-216ENST00000490193 PRKG1Q13976 671 aa10.52□□□□□ -0.73
USP39-216ENST00000490193 CWF19L2Q2TBE0 894 aaKnown RBP10.52□□□□□ -0.73
USP39-216ENST00000490193 TSPYL6Q8N831 410 aa10.52□□□□□ -0.73
USP39-216ENST00000490193 SLC10A4Q96EP9 437 aa10.52□□□□□ -0.73
USP39-216ENST00000490193 WNK4Q96J92 1243 aa10.52□□□□□ -0.73
USP39-216ENST00000490193 CD209Q9NNX6 404 aa10.52□□□□□ -0.73
USP39-216ENST00000490193 TRIM17Q9Y577 477 aa10.52□□□□□ -0.73
USP39-216ENST00000490193 ARAP2Q8WZ64 1704 aa10.52□□□□□ -0.73
USP39-216ENST00000490193 IGF2BP3O00425 579 aaKnown RBP eCLIP10.51□□□□□ -0.73
USP39-216ENST00000490193 PPP1R12BO60237 982 aaPredicted RBP10.51□□□□□ -0.73
USP39-216ENST00000490193 ITGA6P23229 1130 aa10.51□□□□□ -0.73
USP39-216ENST00000490193 FKBP1AP62942 108 aaKnown RBP10.51□□□□□ -0.73
USP39-216ENST00000490193 DLGAP5Q15398 846 aa10.51□□□□□ -0.73
USP39-216ENST00000490193 UBE3BQ7Z3V4 1068 aa10.51□□□□□ -0.73
USP39-216ENST00000490193 CERS5Q8N5B7 392 aa10.51□□□□□ -0.73
USP39-216ENST00000490193 ARMC5Q96C12 935 aa10.51□□□□□ -0.73
USP39-216ENST00000490193 ERO1AQ96HE7 468 aa10.51□□□□□ -0.73
USP39-216ENST00000490193 KIAA0100Q14667 2235 aaKnown RBP10.51□□□□□ -0.73
USP39-216ENST00000490193 TESPA1A2RU30 521 aaPredicted RBP10.5□□□□□ -0.73
USP39-216ENST00000490193 CHRNDQ07001 517 aa10.5□□□□□ -0.73
USP39-216ENST00000490193 DDX10Q13206 875 aaKnown RBP10.5□□□□□ -0.73
USP39-216ENST00000490193 GCKRQ14397 625 aa10.5□□□□□ -0.73
USP39-216ENST00000490193 SUPT20HL1Q3ZLR7 823 aa10.5□□□□□ -0.73
USP39-216ENST00000490193 CLMNQ96JQ2 1002 aa10.5□□□□□ -0.73
USP39-216ENST00000490193 MPHOSPH8Q99549 860 aa10.5□□□□□ -0.73
USP39-216ENST00000490193 STK31Q9BXU1 1019 aa10.5□□□□□ -0.73
USP39-216ENST00000490193 FZD1Q9UP38 647 aa10.5□□□□□ -0.73
USP39-216ENST00000490193 PTPN22Q9Y2R2 807 aa10.5□□□□□ -0.73
USP39-216ENST00000490193 MYO1BO43795 1136 aa10.49□□□□□ -0.73
USP39-216ENST00000490193 IL1R1P14778 569 aa10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms