RNA–Protein interactions for RNA: ENST00000489072.5

HMGN1-217, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 1,014 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-217ENST00000489072 SASH1O94885 1247 aa31.26■■■□□ 2.59
HMGN1-217ENST00000489072 CDCA5Q96FF9 252 aa31.26■■■□□ 2.59
HMGN1-217ENST00000489072 HDAC9Q9UKV0 1011 aa31.26■■■□□ 2.59
HMGN1-217ENST00000489072 FAM205AQ6ZU69 1335 aa31.25■■■□□ 2.59
HMGN1-217ENST00000489072 ECE1P42892 770 aa31.25■■■□□ 2.59
HMGN1-217ENST00000489072 FKBP1AP62942 108 aaKnown RBP31.25■■■□□ 2.59
HMGN1-217ENST00000489072 GRM1Q13255 1194 aa31.25■■■□□ 2.59
HMGN1-217ENST00000489072 ZBED3Q96IU2 234 aaPredicted RBP31.25■■■□□ 2.59
HMGN1-217ENST00000489072 HHIPL1Q96JK4 782 aa31.25■■■□□ 2.59
HMGN1-217ENST00000489072 ATG9AQ7Z3C6 839 aa31.24■■■□□ 2.59
HMGN1-217ENST00000489072 FBXO33Q7Z6M2 555 aa31.24■■■□□ 2.59
HMGN1-217ENST00000489072 GBA2Q9HCG7 927 aaPredicted RBP31.24■■■□□ 2.59
HMGN1-217ENST00000489072 CLUAP1Q96AJ1 413 aa31.23■■■□□ 2.59
HMGN1-217ENST00000489072 WBP1LQ9NX94 342 aa31.23■■■□□ 2.59
HMGN1-217ENST00000489072 HDAC5Q9UQL6 1122 aa31.23■■■□□ 2.59
HMGN1-217ENST00000489072 ARAP2Q8WZ64 1704 aa31.22■■■□□ 2.59
HMGN1-217ENST00000489072 F8W031 263 aaPredicted RBP31.22■■■□□ 2.59
HMGN1-217ENST00000489072 FGFR2P21802 821 aa31.22■■■□□ 2.59
HMGN1-217ENST00000489072 FOXN1O15353 648 aa31.21■■■□□ 2.59
HMGN1-217ENST00000489072 AOC2O75106 756 aa31.21■■■□□ 2.59
HMGN1-217ENST00000489072 HUNKP57058 714 aa31.21■■■□□ 2.59
HMGN1-217ENST00000489072 SIL1Q9H173 461 aa31.21■■■□□ 2.59
HMGN1-217ENST00000489072 PCDHAC2Q9Y5I4 1007 aa31.21■■■□□ 2.59
HMGN1-217ENST00000489072 ECM29Q5VYK3 1845 aa31.2■■■□□ 2.59
HMGN1-217ENST00000489072 GNAI3P08754 354 aa31.2■■■□□ 2.59
HMGN1-217ENST00000489072 PUM3Q15397 648 aaKnown RBP31.2■■■□□ 2.59
HMGN1-217ENST00000489072 COL13A1Q5TAT6 717 aaPredicted RBP31.2■■■□□ 2.59
HMGN1-217ENST00000489072 C2orf69Q8N8R5 385 aa31.2■■■□□ 2.59
HMGN1-217ENST00000489072 IQSEC3Q9UPP2 1182 aaPredicted RBP31.2■■■□□ 2.59
HMGN1-217ENST00000489072 ZKSCAN2Q63HK3 967 aa31.19■■■□□ 2.58
HMGN1-217ENST00000489072 PA2G4Q9UQ80 394 aaKnown RBP31.19■■■□□ 2.58
HMGN1-217ENST00000489072 CIAO1O76071 339 aa31.18■■■□□ 2.58
HMGN1-217ENST00000489072 BCAMP50895 628 aa31.18■■■□□ 2.58
HMGN1-217ENST00000489072 DLGAP5Q15398 846 aa31.18■■■□□ 2.58
HMGN1-217ENST00000489072 MFSD14BQ5SR56 506 aa31.18■■■□□ 2.58
HMGN1-217ENST00000489072 PRAMEF18Q5VWM3 479 aa31.18■■■□□ 2.58
HMGN1-217ENST00000489072 VPS37DQ86XT2 251 aa31.18■■■□□ 2.58
HMGN1-217ENST00000489072 MTMR14Q8NCE2 650 aa31.18■■■□□ 2.58
HMGN1-217ENST00000489072 FBXO3Q9UK99 471 aa31.18■■■□□ 2.58
HMGN1-217ENST00000489072 CAVIN4Q5BKX8 364 aa31.17■■■□□ 2.58
HMGN1-217ENST00000489072 MAP2K1Q02750 393 aaPredicted RBP31.16■■■□□ 2.58
HMGN1-217ENST00000489072 CFAP100Q494V2 611 aa31.16■■■□□ 2.58
HMGN1-217ENST00000489072 TMEM57Q8N5G2 664 aa31.16■■■□□ 2.58
HMGN1-217ENST00000489072 PAPPA2Q9BXP8 1791 aa31.15■■■□□ 2.58
HMGN1-217ENST00000489072 IFIT1P09914 478 aaKnown RBP31.15■■■□□ 2.58
HMGN1-217ENST00000489072 AIDAQ96BJ3 306 aa31.15■■■□□ 2.58
HMGN1-217ENST00000489072 COPRSQ9NQ92 184 aa31.15■■■□□ 2.58
HMGN1-217ENST00000489072 AOX1Q06278 1338 aa31.15■■■□□ 2.58
HMGN1-217ENST00000489072 MAP2K2P36507 400 aa31.14■■■□□ 2.58
HMGN1-217ENST00000489072 MTX1Q13505 466 aa31.14■■■□□ 2.58
HMGN1-217ENST00000489072 LPIN2Q92539 896 aa31.14■■■□□ 2.58
HMGN1-217ENST00000489072 MYH13Q9UKX3 1938 aa31.14■■■□□ 2.57
HMGN1-217ENST00000489072 SPDYE2BA6NHP3 402 aa31.13■■■□□ 2.57
HMGN1-217ENST00000489072 SPDYE6P0CI01 402 aa31.13■■■□□ 2.57
HMGN1-217ENST00000489072 SLC5A1P13866 664 aa31.13■■■□□ 2.57
HMGN1-217ENST00000489072 CHAF1AQ13111 956 aaPredicted RBP31.13■■■□□ 2.57
HMGN1-217ENST00000489072 GRIK5Q16478 980 aa31.13■■■□□ 2.57
HMGN1-217ENST00000489072 RGMBQ6NW40 437 aa31.13■■■□□ 2.57
HMGN1-217ENST00000489072 APOBEC3FQ8IUX4 373 aaKnown RBP31.13■■■□□ 2.57
HMGN1-217ENST00000489072 SRGAP3O43295 1099 aa31.12■■■□□ 2.57
HMGN1-217ENST00000489072 PRMT6Q96LA8 375 aaPredicted RBP31.12■■■□□ 2.57
HMGN1-217ENST00000489072 CEP126Q9P2H0 1117 aa31.12■■■□□ 2.57
HMGN1-217ENST00000489072 TTF2Q9UNY4 1162 aaKnown RBP31.12■■■□□ 2.57
HMGN1-217ENST00000489072 FAM155AB1AL88 458 aaPredicted RBP31.11■■■□□ 2.57
HMGN1-217ENST00000489072 FRAT2O75474 233 aaPredicted RBP31.11■■■□□ 2.57
HMGN1-217ENST00000489072 GNAI2P04899 355 aa31.11■■■□□ 2.57
HMGN1-217ENST00000489072 IL15P40933 162 aaPredicted RBP31.11■■■□□ 2.57
HMGN1-217ENST00000489072 ATP2B3Q16720 1220 aa31.11■■■□□ 2.57
HMGN1-217ENST00000489072 ZIC5Q96T25 663 aa31.11■■■□□ 2.57
HMGN1-217ENST00000489072 CTCFP49711 727 aaPredicted RBP31.1■■■□□ 2.57
HMGN1-217ENST00000489072 MOB2Q70IA6 237 aa31.1■■■□□ 2.57
HMGN1-217ENST00000489072 RBM5P52756 815 aaKnown RBP eCLIP31.09■■■□□ 2.57
HMGN1-217ENST00000489072 FKBP1BP68106 108 aa31.09■■■□□ 2.57
HMGN1-217ENST00000489072 CLRN2A0PK11 232 aa31.08■■■□□ 2.57
HMGN1-217ENST00000489072 RLBP1P12271 317 aa31.08■■■□□ 2.57
HMGN1-217ENST00000489072 ZNF157P51786 506 aaPredicted RBP31.08■■■□□ 2.57
HMGN1-217ENST00000489072 NOGQ13253 232 aa31.08■■■□□ 2.57
HMGN1-217ENST00000489072 IFFO2Q5TF58 517 aa31.08■■■□□ 2.57
HMGN1-217ENST00000489072 TBC1D22AQ8WUA7 517 aa31.08■■■□□ 2.57
HMGN1-217ENST00000489072 SERPINA10Q9UK55 444 aa31.08■■■□□ 2.57
HMGN1-217ENST00000489072 HSPA8P11142 646 aaKnown RBP31.07■■■□□ 2.56
HMGN1-217ENST00000489072 COL1A1P02452 1464 aaPredicted RBP31.07■■■□□ 2.56
HMGN1-217ENST00000489072 DZIP1LQ8IYY4 767 aaKnown RBP31.06■■■□□ 2.56
HMGN1-217ENST00000489072 CCDC102AQ96A19 550 aa31.06■■■□□ 2.56
HMGN1-217ENST00000489072 DEFB129Q9H1M3 183 aa31.06■■■□□ 2.56
HMGN1-217ENST00000489072 PNMA6EA0A0J9YXQ4 647 aa31.05■■■□□ 2.56
HMGN1-217ENST00000489072 MYO1BO43795 1136 aa31.05■■■□□ 2.56
HMGN1-217ENST00000489072 LBX1P52954 281 aa31.05■■■□□ 2.56
HMGN1-217ENST00000489072 FTSJ3Q8IY81 847 aaKnown RBP31.05■■■□□ 2.56
HMGN1-217ENST00000489072 UBE2Q2LH0YL09 131 aa31.04■■■□□ 2.56
HMGN1-217ENST00000489072 SLC10A3P09131 477 aa31.04■■■□□ 2.56
HMGN1-217ENST00000489072 CRKP46108 304 aa31.04■■■□□ 2.56
HMGN1-217ENST00000489072 VEZTQ9HBM0 779 aa31.04■■■□□ 2.56
HMGN1-217ENST00000489072 PRDM10Q9NQV6 1147 aa31.04■■■□□ 2.56
HMGN1-217ENST00000489072 ADORA1P30542 326 aa31.03■■■□□ 2.56
HMGN1-217ENST00000489072 NF2P35240 595 aa31.03■■■□□ 2.56
HMGN1-217ENST00000489072 BEGAINQ9BUH8 593 aa31.03■■■□□ 2.56
HMGN1-217ENST00000489072 SSC5DA1L4H1 1573 aa31.02■■■□□ 2.56
HMGN1-217ENST00000489072 TFCP2Q12800 502 aa31.02■■■□□ 2.56
HMGN1-217ENST00000489072 TTLL12Q14166 644 aaPredicted RBP31.02■■■□□ 2.56
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms