RNA–Protein interactions for RNA: ENST00000488321.1

TRIM54-204, Transcript of tripartite motif containing 54, humanhuman

TSL 2

Gene TRIM54, Length 560 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-204ENST00000488321 MTX1Q13505 466 aa18.62■□□□□ 0.57
TRIM54-204ENST00000488321 ANGEL2Q5VTE6 544 aaKnown RBP18.62■□□□□ 0.57
TRIM54-204ENST00000488321 SULF1Q8IWU6 871 aa18.62■□□□□ 0.57
TRIM54-204ENST00000488321 CERS5Q8N5B7 392 aa18.62■□□□□ 0.57
TRIM54-204ENST00000488321 LPIN2Q92539 896 aa18.62■□□□□ 0.57
TRIM54-204ENST00000488321 YTHDC1Q96MU7 727 aaKnown RBP18.62■□□□□ 0.57
TRIM54-204ENST00000488321 C1orf115Q9H7X2 142 aa18.62■□□□□ 0.57
TRIM54-204ENST00000488321 ADM5C9JUS6 153 aa18.61■□□□□ 0.57
TRIM54-204ENST00000488321 MS4A1P11836 297 aa18.61■□□□□ 0.57
TRIM54-204ENST00000488321 FGFR2P21802 821 aa18.61■□□□□ 0.57
TRIM54-204ENST00000488321 BCAMP50895 628 aa18.61■□□□□ 0.57
TRIM54-204ENST00000488321 CHAF1AQ13111 956 aaPredicted RBP18.61■□□□□ 0.57
TRIM54-204ENST00000488321 ATP2B3Q16720 1220 aa18.61■□□□□ 0.57
TRIM54-204ENST00000488321 DLK2Q6UY11 383 aa18.61■□□□□ 0.57
TRIM54-204ENST00000488321 FBXO33Q7Z6M2 555 aa18.61■□□□□ 0.57
TRIM54-204ENST00000488321 MMP14P50281 582 aa18.6■□□□□ 0.57
TRIM54-204ENST00000488321 NBPF9Q3BBW0 867 aa18.6■□□□□ 0.57
TRIM54-204ENST00000488321 CST9Q5W186 159 aa18.6■□□□□ 0.57
TRIM54-204ENST00000488321 FAM205AQ6ZU69 1335 aa18.59■□□□□ 0.57
TRIM54-204ENST00000488321 PNMA6EA0A0J9YXQ4 647 aa18.59■□□□□ 0.57
TRIM54-204ENST00000488321 ZBTB7BO15156 539 aaPredicted RBP18.59■□□□□ 0.57
TRIM54-204ENST00000488321 FKBP1AP62942 108 aaKnown RBP18.59■□□□□ 0.57
TRIM54-204ENST00000488321 MFSD14BQ5SR56 506 aa18.59■□□□□ 0.57
TRIM54-204ENST00000488321 PAXIP1Q6ZW49 1069 aaPredicted RBP18.59■□□□□ 0.57
TRIM54-204ENST00000488321 CNTNAP1P78357 1384 aa18.58■□□□□ 0.57
TRIM54-204ENST00000488321 WNT10BO00744 389 aa18.58■□□□□ 0.56
TRIM54-204ENST00000488321 DLGAP5Q15398 846 aa18.58■□□□□ 0.56
TRIM54-204ENST00000488321 DEFB115Q30KQ5 88 aa18.58■□□□□ 0.56
TRIM54-204ENST00000488321 RBM5P52756 815 aaKnown RBP eCLIP18.57■□□□□ 0.56
TRIM54-204ENST00000488321 SCAF8Q9UPN6 1271 aaKnown RBP18.57■□□□□ 0.56
TRIM54-204ENST00000488321 A0A1B0GUL6 1792 aa18.57■□□□□ 0.56
TRIM54-204ENST00000488321 RASSF10A6NK89 507 aa18.56■□□□□ 0.56
TRIM54-204ENST00000488321 TFCP2Q12800 502 aa18.56■□□□□ 0.56
TRIM54-204ENST00000488321 GRM1Q13255 1194 aa18.56■□□□□ 0.56
TRIM54-204ENST00000488321 G3BP1Q13283 466 aaKnown RBP eCLIP18.56■□□□□ 0.56
TRIM54-204ENST00000488321 JMYQ8N9B5 988 aa18.56■□□□□ 0.56
TRIM54-204ENST00000488321 TTF2Q9UNY4 1162 aaKnown RBP18.56■□□□□ 0.56
TRIM54-204ENST00000488321 TLL2Q9Y6L7 1015 aa18.56■□□□□ 0.56
TRIM54-204ENST00000488321 PITPNM2Q9BZ72 1349 aa18.55■□□□□ 0.56
TRIM54-204ENST00000488321 VEGFBP49765 207 aa18.55■□□□□ 0.56
TRIM54-204ENST00000488321 ATP8B2P98198 1209 aa18.55■□□□□ 0.56
TRIM54-204ENST00000488321 OS9Q13438 667 aaPredicted RBP18.55■□□□□ 0.56
TRIM54-204ENST00000488321 CFAP100Q494V2 611 aa18.55■□□□□ 0.56
TRIM54-204ENST00000488321 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.55■□□□□ 0.56
TRIM54-204ENST00000488321 TBC1D22AQ8WUA7 517 aa18.55■□□□□ 0.56
TRIM54-204ENST00000488321 CDCA5Q96FF9 252 aa18.55■□□□□ 0.56
TRIM54-204ENST00000488321 GNL3LQ9NVN8 582 aaKnown RBP18.55■□□□□ 0.56
TRIM54-204ENST00000488321 AKAP2Q9Y2D5 859 aa18.55■□□□□ 0.56
TRIM54-204ENST00000488321 COG6Q9Y2V7 657 aa18.55■□□□□ 0.56
TRIM54-204ENST00000488321 TIMM10P62072 90 aa18.54■□□□□ 0.56
TRIM54-204ENST00000488321 MVPQ14764 893 aaKnown RBP18.54■□□□□ 0.56
TRIM54-204ENST00000488321 PCDHAC2Q9Y5I4 1007 aa18.54■□□□□ 0.56
TRIM54-204ENST00000488321 A0A1B0GUL7 405 aa18.53■□□□□ 0.56
TRIM54-204ENST00000488321 MYO1BO43795 1136 aa18.53■□□□□ 0.56
TRIM54-204ENST00000488321 ADORA1P30542 326 aa18.53■□□□□ 0.56
TRIM54-204ENST00000488321 POLA2Q14181 598 aa18.53■□□□□ 0.56
TRIM54-204ENST00000488321 SAPCD2Q86UD0 394 aa18.53■□□□□ 0.56
TRIM54-204ENST00000488321 C2orf69Q8N8R5 385 aa18.53■□□□□ 0.56
TRIM54-204ENST00000488321 SSH3Q8TE77 659 aa18.53■□□□□ 0.56
TRIM54-204ENST00000488321 ZBED3Q96IU2 234 aaPredicted RBP18.53■□□□□ 0.56
TRIM54-204ENST00000488321 NEUROD6Q96NK8 337 aa18.53■□□□□ 0.56
TRIM54-204ENST00000488321 GBA2Q9HCG7 927 aaPredicted RBP18.53■□□□□ 0.56
TRIM54-204ENST00000488321 PSME4Q14997 1843 aa18.53■□□□□ 0.56
TRIM54-204ENST00000488321 CLRN2A0PK11 232 aa18.52■□□□□ 0.56
TRIM54-204ENST00000488321 SPDYE2BA6NHP3 402 aa18.52■□□□□ 0.56
TRIM54-204ENST00000488321 SURF6O75683 361 aaKnown RBP18.52■□□□□ 0.56
TRIM54-204ENST00000488321 SPDYE6P0CI01 402 aa18.52■□□□□ 0.56
TRIM54-204ENST00000488321 PHKA1P46020 1223 aa18.52■□□□□ 0.56
TRIM54-204ENST00000488321 HUNKP57058 714 aa18.52■□□□□ 0.56
TRIM54-204ENST00000488321 GRIK5Q16478 980 aa18.52■□□□□ 0.56
TRIM54-204ENST00000488321 PRAMEF18Q5VWM3 479 aa18.52■□□□□ 0.56
TRIM54-204ENST00000488321 CYP4F22Q6NT55 531 aa18.52■□□□□ 0.56
TRIM54-204ENST00000488321 APOBEC3FQ8IUX4 373 aaKnown RBP18.52■□□□□ 0.56
TRIM54-204ENST00000488321 MTMR14Q8NCE2 650 aa18.52■□□□□ 0.56
TRIM54-204ENST00000488321 DDX19BQ9UMR2 479 aa18.52■□□□□ 0.56
TRIM54-204ENST00000488321 ECE1P42892 770 aa18.51■□□□□ 0.55
TRIM54-204ENST00000488321 GORABQ5T7V8 394 aa18.51■□□□□ 0.55
TRIM54-204ENST00000488321 CCDC102BQ68D86 513 aa18.51■□□□□ 0.55
TRIM54-204ENST00000488321 CEP85Q6P2H3 762 aa18.51■□□□□ 0.55
TRIM54-204ENST00000488321 WDR66Q8TBY9 1149 aa18.51■□□□□ 0.55
TRIM54-204ENST00000488321 CAPNS2Q96L46 248 aa18.51■□□□□ 0.55
TRIM54-204ENST00000488321 PRMT6Q96LA8 375 aaPredicted RBP18.51■□□□□ 0.55
TRIM54-204ENST00000488321 VEZTQ9HBM0 779 aa18.51■□□□□ 0.55
TRIM54-204ENST00000488321 SERPINA10Q9UK55 444 aa18.51■□□□□ 0.55
TRIM54-204ENST00000488321 WDR33Q9C0J8 1336 aaKnown RBP18.5■□□□□ 0.55
TRIM54-204ENST00000488321 CRKP46108 304 aa18.5■□□□□ 0.55
TRIM54-204ENST00000488321 XAGE2Q96GT9 111 aa18.5■□□□□ 0.55
TRIM54-204ENST00000488321 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP18.5■□□□□ 0.55
TRIM54-204ENST00000488321 C20orf194Q5TEA3 1177 aa18.49■□□□□ 0.55
TRIM54-204ENST00000488321 CHMP4BQ9H444 224 aaKnown RBP18.49■□□□□ 0.55
TRIM54-204ENST00000488321 DENND2AQ9ULE3 1009 aa18.49■□□□□ 0.55
TRIM54-204ENST00000488321 ZNF646O15015 1829 aaPredicted RBP18.49■□□□□ 0.55
TRIM54-204ENST00000488321 SEMA3EO15041 775 aa18.48■□□□□ 0.55
TRIM54-204ENST00000488321 HSPA1AP0DMV8 641 aaKnown RBP18.48■□□□□ 0.55
TRIM54-204ENST00000488321 HSPA1BP0DMV9 641 aaKnown RBP18.48■□□□□ 0.55
TRIM54-204ENST00000488321 NF2P35240 595 aa18.48■□□□□ 0.55
TRIM54-204ENST00000488321 TTLL12Q14166 644 aaPredicted RBP18.48■□□□□ 0.55
TRIM54-204ENST00000488321 PDE3AQ14432 1141 aa18.48■□□□□ 0.55
TRIM54-204ENST00000488321 TEKT1Q969V4 418 aa18.48■□□□□ 0.55
TRIM54-204ENST00000488321 DEFB129Q9H1M3 183 aa18.48■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms