RNA–Protein interactions for RNA: ENST00000486404.5

CHMP3-208, Transcript of charged multivesicular body protein 3, humanhuman

TSL 3

Gene CHMP3, Length 650 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-208ENST00000486404 ZKSCAN2Q63HK3 967 aa16.08■□□□□ 0.16
CHMP3-208ENST00000486404 FTSJ3Q8IY81 847 aaKnown RBP16.08■□□□□ 0.16
CHMP3-208ENST00000486404 CLUAP1Q96AJ1 413 aa16.08■□□□□ 0.16
CHMP3-208ENST00000486404 AIDAQ96BJ3 306 aa16.08■□□□□ 0.16
CHMP3-208ENST00000486404 JAG2Q9Y219 1238 aa16.08■□□□□ 0.16
CHMP3-208ENST00000486404 PITPNM2Q9BZ72 1349 aa16.08■□□□□ 0.16
CHMP3-208ENST00000486404 F8W031 263 aaPredicted RBP16.07■□□□□ 0.16
CHMP3-208ENST00000486404 EYA2O00167 538 aa16.07■□□□□ 0.16
CHMP3-208ENST00000486404 FRAT2O75474 233 aaPredicted RBP16.07■□□□□ 0.16
CHMP3-208ENST00000486404 PDE8BO95263 885 aa16.07■□□□□ 0.16
CHMP3-208ENST00000486404 PUM3Q15397 648 aaKnown RBP16.07■□□□□ 0.16
CHMP3-208ENST00000486404 CAPNS2Q96L46 248 aa16.07■□□□□ 0.16
CHMP3-208ENST00000486404 SIL1Q9H173 461 aa16.07■□□□□ 0.16
CHMP3-208ENST00000486404 WDR33Q9C0J8 1336 aaKnown RBP16.07■□□□□ 0.16
CHMP3-208ENST00000486404 IFIT1P09914 478 aaKnown RBP16.06■□□□□ 0.16
CHMP3-208ENST00000486404 SLC5A1P13866 664 aa16.06■□□□□ 0.16
CHMP3-208ENST00000486404 GBA2Q9HCG7 927 aaPredicted RBP16.06■□□□□ 0.16
CHMP3-208ENST00000486404 HOXD11P31277 338 aaPredicted RBP16.05■□□□□ 0.16
CHMP3-208ENST00000486404 RFX5P48382 616 aaPredicted RBP16.05■□□□□ 0.16
CHMP3-208ENST00000486404 NBPF9Q3BBW0 867 aa16.05■□□□□ 0.16
CHMP3-208ENST00000486404 MFSD14BQ5SR56 506 aa16.05■□□□□ 0.16
CHMP3-208ENST00000486404 CYP4F22Q6NT55 531 aa16.05■□□□□ 0.16
CHMP3-208ENST00000486404 SAPCD2Q86UD0 394 aa16.05■□□□□ 0.16
CHMP3-208ENST00000486404 CERS5Q8N5B7 392 aa16.05■□□□□ 0.16
CHMP3-208ENST00000486404 VGLL2Q8N8G2 317 aa16.05■□□□□ 0.16
CHMP3-208ENST00000486404 C2orf69Q8N8R5 385 aa16.05■□□□□ 0.16
CHMP3-208ENST00000486404 CDCA5Q96FF9 252 aa16.05■□□□□ 0.16
CHMP3-208ENST00000486404 PCNTO95613 3336 aa16.04■□□□□ 0.16
CHMP3-208ENST00000486404 COL1A1P02452 1464 aaPredicted RBP16.04■□□□□ 0.16
CHMP3-208ENST00000486404 FAM205AQ6ZU69 1335 aa16.04■□□□□ 0.16
CHMP3-208ENST00000486404 WNT10BO00744 389 aa16.04■□□□□ 0.16
CHMP3-208ENST00000486404 HUNKP57058 714 aa16.04■□□□□ 0.16
CHMP3-208ENST00000486404 FKBP1AP62942 108 aaKnown RBP16.04■□□□□ 0.16
CHMP3-208ENST00000486404 PTPN12Q05209 780 aaKnown RBP16.04■□□□□ 0.16
CHMP3-208ENST00000486404 CHAF1AQ13111 956 aaPredicted RBP16.04■□□□□ 0.16
CHMP3-208ENST00000486404 DLGAP5Q15398 846 aa16.04■□□□□ 0.16
CHMP3-208ENST00000486404 DLK2Q6UY11 383 aa16.04■□□□□ 0.16
CHMP3-208ENST00000486404 APOBEC3FQ8IUX4 373 aaKnown RBP16.04■□□□□ 0.16
CHMP3-208ENST00000486404 FBXO3Q9UK99 471 aa16.04■□□□□ 0.16
CHMP3-208ENST00000486404 TNNQ9UQP3 1299 aa16.04■□□□□ 0.16
CHMP3-208ENST00000486404 SRGAP3O43295 1099 aa16.03■□□□□ 0.16
CHMP3-208ENST00000486404 MYO1BO43795 1136 aa16.03■□□□□ 0.16
CHMP3-208ENST00000486404 CIAO1O76071 339 aa16.03■□□□□ 0.16
CHMP3-208ENST00000486404 RBM5P52756 815 aaKnown RBP eCLIP16.03■□□□□ 0.16
CHMP3-208ENST00000486404 TDRD7Q8NHU6 1098 aaKnown RBP16.03■□□□□ 0.16
CHMP3-208ENST00000486404 HHIPL1Q96JK4 782 aa16.03■□□□□ 0.16
CHMP3-208ENST00000486404 FAM84BQ96KN1 310 aaPredicted RBP16.03■□□□□ 0.16
CHMP3-208ENST00000486404 IQSEC3Q9UPP2 1182 aaPredicted RBP16.03■□□□□ 0.16
CHMP3-208ENST00000486404 GNAI2P04899 355 aa16.02■□□□□ 0.16
CHMP3-208ENST00000486404 NF2P35240 595 aa16.02■□□□□ 0.16
CHMP3-208ENST00000486404 IL15P40933 162 aaPredicted RBP16.02■□□□□ 0.16
CHMP3-208ENST00000486404 MAP2K1Q02750 393 aaPredicted RBP16.02■□□□□ 0.16
CHMP3-208ENST00000486404 ATP2B3Q16720 1220 aa16.02■□□□□ 0.16
CHMP3-208ENST00000486404 ITPRIPQ8IWB1 547 aa16.02■□□□□ 0.16
CHMP3-208ENST00000486404 TMEM57Q8N5G2 664 aa16.02■□□□□ 0.16
CHMP3-208ENST00000486404 LPIN2Q92539 896 aa16.02■□□□□ 0.16
CHMP3-208ENST00000486404 BEGAINQ9BUH8 593 aa16.02■□□□□ 0.16
CHMP3-208ENST00000486404 CEP126Q9P2H0 1117 aa16.02■□□□□ 0.16
CHMP3-208ENST00000486404 TTLL12Q14166 644 aaPredicted RBP16.01■□□□□ 0.15
CHMP3-208ENST00000486404 CFAP100Q494V2 611 aa16.01■□□□□ 0.15
CHMP3-208ENST00000486404 ATG9AQ7Z3C6 839 aa16.01■□□□□ 0.15
CHMP3-208ENST00000486404 FBXO33Q7Z6M2 555 aa16.01■□□□□ 0.15
CHMP3-208ENST00000486404 TBC1D22AQ8WUA7 517 aa16.01■□□□□ 0.15
CHMP3-208ENST00000486404 TTF2Q9UNY4 1162 aaKnown RBP16.01■□□□□ 0.15
CHMP3-208ENST00000486404 SCAF8Q9UPN6 1271 aaKnown RBP16.01■□□□□ 0.15
CHMP3-208ENST00000486404 PA2G4Q9UQ80 394 aaKnown RBP16.01■□□□□ 0.15
CHMP3-208ENST00000486404 BCAMP50895 628 aa16■□□□□ 0.15
CHMP3-208ENST00000486404 DZIP1LQ8IYY4 767 aaKnown RBP16■□□□□ 0.15
CHMP3-208ENST00000486404 VEZTQ9HBM0 779 aa16■□□□□ 0.15
CHMP3-208ENST00000486404 COPRSQ9NQ92 184 aa16■□□□□ 0.15
CHMP3-208ENST00000486404 AKAP11Q9UKA4 1901 aa16■□□□□ 0.15
CHMP3-208ENST00000486404 SPDYE2BA6NHP3 402 aa15.99■□□□□ 0.15
CHMP3-208ENST00000486404 AOC2O75106 756 aa15.99■□□□□ 0.15
CHMP3-208ENST00000486404 SPDYE6P0CI01 402 aa15.99■□□□□ 0.15
CHMP3-208ENST00000486404 FGFR2P21802 821 aa15.99■□□□□ 0.15
CHMP3-208ENST00000486404 FKBP1BP68106 108 aa15.99■□□□□ 0.15
CHMP3-208ENST00000486404 MTX1Q13505 466 aa15.99■□□□□ 0.15
CHMP3-208ENST00000486404 MTMR14Q8NCE2 650 aa15.99■□□□□ 0.15
CHMP3-208ENST00000486404 ZBED3Q96IU2 234 aaPredicted RBP15.99■□□□□ 0.15
CHMP3-208ENST00000486404 GNL3LQ9NVN8 582 aaKnown RBP15.99■□□□□ 0.15
CHMP3-208ENST00000486404 MAST3O60307 1309 aa15.98■□□□□ 0.15
CHMP3-208ENST00000486404 CLRN2A0PK11 232 aa15.98■□□□□ 0.15
CHMP3-208ENST00000486404 FOXN1O15353 648 aa15.98■□□□□ 0.15
CHMP3-208ENST00000486404 CTCFP49711 727 aaPredicted RBP15.98■□□□□ 0.15
CHMP3-208ENST00000486404 ZNF157P51786 506 aaPredicted RBP15.98■□□□□ 0.15
CHMP3-208ENST00000486404 NOGQ13253 232 aa15.98■□□□□ 0.15
CHMP3-208ENST00000486404 RGMBQ6NW40 437 aa15.98■□□□□ 0.15
CHMP3-208ENST00000486404 SERPINA10Q9UK55 444 aa15.98■□□□□ 0.15
CHMP3-208ENST00000486404 MAP2K2P36507 400 aa15.97■□□□□ 0.15
CHMP3-208ENST00000486404 PRAMEF18Q5VWM3 479 aa15.97■□□□□ 0.15
CHMP3-208ENST00000486404 WBP1LQ9NX94 342 aa15.97■□□□□ 0.15
CHMP3-208ENST00000486404 PCDHAC2Q9Y5I4 1007 aa15.97■□□□□ 0.15
CHMP3-208ENST00000486404 OTOFQ9HC10 1997 aa15.96■□□□□ 0.15
CHMP3-208ENST00000486404 MS4A1P11836 297 aa15.96■□□□□ 0.15
CHMP3-208ENST00000486404 CRKP46108 304 aa15.96■□□□□ 0.15
CHMP3-208ENST00000486404 TNFAIP1Q13829 316 aa15.96■□□□□ 0.15
CHMP3-208ENST00000486404 CCDC102AQ96A19 550 aa15.96■□□□□ 0.15
CHMP3-208ENST00000486404 AKAP2Q9Y2D5 859 aa15.96■□□□□ 0.15
CHMP3-208ENST00000486404 PPP2R3BQ9Y5P8 575 aa15.96■□□□□ 0.15
CHMP3-208ENST00000486404 OS9Q13438 667 aaPredicted RBP15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms