RNA–Protein interactions for RNA: ENST00000477421.2

COL27A1-204, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 2

Gene COL27A1, Length 3,991 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-204ENST00000477421 NR1I2O75469 434 aa12.75□□□□□ -0.37
COL27A1-204ENST00000477421 RBM5P52756 815 aaKnown RBP eCLIP12.75□□□□□ -0.37
COL27A1-204ENST00000477421 CCDC102BQ68D86 513 aa12.75□□□□□ -0.37
COL27A1-204ENST00000477421 CATIPQ7Z7H3 387 aa12.75□□□□□ -0.37
COL27A1-204ENST00000477421 ZBTB9Q96C00 473 aa12.75□□□□□ -0.37
COL27A1-204ENST00000477421 FRMPD1Q5SYB0 1578 aa12.74□□□□□ -0.37
COL27A1-204ENST00000477421 RTN1Q16799 776 aa12.74□□□□□ -0.37
COL27A1-204ENST00000477421 CMTR1Q8N1G2 835 aaKnown RBP12.74□□□□□ -0.37
COL27A1-204ENST00000477421 GPHNQ9NQX3 736 aaPredicted RBP12.74□□□□□ -0.37
COL27A1-204ENST00000477421 TOP1P11387 765 aaKnown RBP12.74□□□□□ -0.37
COL27A1-204ENST00000477421 ZSCAN29Q8IWY8 852 aaPredicted RBP12.74□□□□□ -0.37
COL27A1-204ENST00000477421 ADAMTS13Q76LX8 1427 aa12.74□□□□□ -0.37
COL27A1-204ENST00000477421 SPDYE4A6NLX3 237 aa12.74□□□□□ -0.37
COL27A1-204ENST00000477421 ADD1P35611 737 aaKnown RBP12.74□□□□□ -0.37
COL27A1-204ENST00000477421 CTDSPL2Q05D32 466 aa12.74□□□□□ -0.37
COL27A1-204ENST00000477421 KCNG4Q8TDN1 519 aa12.74□□□□□ -0.37
COL27A1-204ENST00000477421 GTF3C6Q969F1 213 aa12.74□□□□□ -0.37
COL27A1-204ENST00000477421 HAUS7Q99871 368 aa12.74□□□□□ -0.37
COL27A1-204ENST00000477421 GREM2Q9H772 168 aa12.74□□□□□ -0.37
COL27A1-204ENST00000477421 SH3TC1Q8TE82 1336 aa12.73□□□□□ -0.37
COL27A1-204ENST00000477421 FGAP02671 866 aa12.73□□□□□ -0.37
COL27A1-204ENST00000477421 CDK5RAP3Q96JB5 506 aa12.73□□□□□ -0.37
COL27A1-204ENST00000477421 USP28Q96RU2 1077 aa12.73□□□□□ -0.37
COL27A1-204ENST00000477421 ATP10DQ9P241 1426 aa12.73□□□□□ -0.37
COL27A1-204ENST00000477421 VWDEQ8N2E2 1590 aa12.73□□□□□ -0.37
COL27A1-204ENST00000477421 SSH2Q76I76 1423 aa12.73□□□□□ -0.37
COL27A1-204ENST00000477421 A0A0U1RQG5 324 aaPredicted RBP12.73□□□□□ -0.37
COL27A1-204ENST00000477421 C6orf229H3BNL8 230 aa12.73□□□□□ -0.37
COL27A1-204ENST00000477421 URI1O94763 535 aaPredicted RBP12.73□□□□□ -0.37
COL27A1-204ENST00000477421 NAA16Q6N069 864 aaPredicted RBP12.73□□□□□ -0.37
COL27A1-204ENST00000477421 CBX8Q9HC52 389 aa12.73□□□□□ -0.37
COL27A1-204ENST00000477421 ZNF532Q9HCE3 1301 aa12.73□□□□□ -0.37
COL27A1-204ENST00000477421 NECTIN1Q15223 517 aa12.73□□□□□ -0.37
COL27A1-204ENST00000477421 ADCY9O60503 1353 aa12.73□□□□□ -0.37
COL27A1-204ENST00000477421 SOGA3Q5TF21 947 aa12.72□□□□□ -0.37
COL27A1-204ENST00000477421 MTERF4Q7Z6M4 381 aaKnown RBP12.72□□□□□ -0.37
COL27A1-204ENST00000477421 ZBTB1Q9Y2K1 713 aa12.72□□□□□ -0.37
COL27A1-204ENST00000477421 USP31Q70CQ4 1352 aa12.72□□□□□ -0.37
COL27A1-204ENST00000477421 SCRN1Q12765 414 aa12.72□□□□□ -0.37
COL27A1-204ENST00000477421 ZNF444Q8N0Y2 327 aaPredicted RBP12.72□□□□□ -0.37
COL27A1-204ENST00000477421 ERBB4Q15303 1308 aa12.72□□□□□ -0.37
COL27A1-204ENST00000477421 NOC3LQ8WTT2 800 aaKnown RBP12.72□□□□□ -0.37
COL27A1-204ENST00000477421 OVOS2A0A0J9YW53 1432 aa12.72□□□□□ -0.37
COL27A1-204ENST00000477421 NPHP4O75161 1426 aaPredicted RBP12.72□□□□□ -0.37
COL27A1-204ENST00000477421 OVOS2Q6IE36 1432 aa12.72□□□□□ -0.37
COL27A1-204ENST00000477421 CBFA2T2O43439 604 aa12.71□□□□□ -0.37
COL27A1-204ENST00000477421 IFIT1BQ5T764 474 aaKnown RBP12.71□□□□□ -0.37
COL27A1-204ENST00000477421 KIF18AQ8NI77 898 aa12.71□□□□□ -0.37
COL27A1-204ENST00000477421 CLTCQ00610 1675 aaKnown RBP12.71□□□□□ -0.37
COL27A1-204ENST00000477421 ERVV-2B6SEH9 535 aa12.71□□□□□ -0.37
COL27A1-204ENST00000477421 ESR2Q92731 530 aa12.71□□□□□ -0.37
COL27A1-204ENST00000477421 NLRP3Q96P20 1036 aa12.71□□□□□ -0.37
COL27A1-204ENST00000477421 SETDB2Q96T68 719 aa12.71□□□□□ -0.37
COL27A1-204ENST00000477421 IFNKQ9P0W0 207 aa12.71□□□□□ -0.37
COL27A1-204ENST00000477421 DACH1Q9UI36 760 aa12.71□□□□□ -0.37
COL27A1-204ENST00000477421 ANGEL1Q9UNK9 670 aaKnown RBP12.71□□□□□ -0.37
COL27A1-204ENST00000477421 ZC3H13Q5T200 1668 aaKnown RBP12.71□□□□□ -0.38
COL27A1-204ENST00000477421 F8W031 263 aaPredicted RBP12.71□□□□□ -0.38
COL27A1-204ENST00000477421 STX17P56962 302 aa12.71□□□□□ -0.38
COL27A1-204ENST00000477421 UBASH3AP57075 661 aa12.71□□□□□ -0.38
COL27A1-204ENST00000477421 CEP131Q9UPN4 1083 aa12.71□□□□□ -0.38
COL27A1-204ENST00000477421 MROH1Q8NDA8 1641 aa12.71□□□□□ -0.38
COL27A1-204ENST00000477421 MPHOSPH10O00566 681 aaKnown RBP12.71□□□□□ -0.38
COL27A1-204ENST00000477421 PHKA1P46020 1223 aa12.71□□□□□ -0.38
COL27A1-204ENST00000477421 ZSWIM4Q9H7M6 989 aa12.71□□□□□ -0.38
COL27A1-204ENST00000477421 GJB4Q9NTQ9 266 aa12.71□□□□□ -0.38
COL27A1-204ENST00000477421 ARGLU1Q9NWB6 273 aaPredicted RBP12.71□□□□□ -0.38
COL27A1-204ENST00000477421 MAGEC2Q9UBF1 373 aaPredicted RBP12.71□□□□□ -0.38
COL27A1-204ENST00000477421 KIAA1210Q9ULL0 1709 aa12.7□□□□□ -0.38
COL27A1-204ENST00000477421 PTPRUQ92729 1446 aa12.7□□□□□ -0.38
COL27A1-204ENST00000477421 PDE8AO60658 829 aa12.7□□□□□ -0.38
COL27A1-204ENST00000477421 LRMPQ12912 555 aa12.7□□□□□ -0.38
COL27A1-204ENST00000477421 HS1BP3Q53T59 392 aa12.7□□□□□ -0.38
COL27A1-204ENST00000477421 PPP1R9BQ96SB3 815 aa12.7□□□□□ -0.38
COL27A1-204ENST00000477421 FAM160A1Q05DH4 1040 aa12.7□□□□□ -0.38
COL27A1-204ENST00000477421 SMARCE1Q969G3 411 aa12.7□□□□□ -0.38
COL27A1-204ENST00000477421 OSBP2Q969R2 916 aa12.7□□□□□ -0.38
COL27A1-204ENST00000477421 DHX58Q96C10 678 aa12.7□□□□□ -0.38
COL27A1-204ENST00000477421 KRT23Q9C075 422 aa12.7□□□□□ -0.38
COL27A1-204ENST00000477421 TFCP2L1Q9NZI6 479 aa12.7□□□□□ -0.38
COL27A1-204ENST00000477421 KCNJ14Q9UNX9 436 aa12.7□□□□□ -0.38
COL27A1-204ENST00000477421 MAGEB6P1A0A0J9YX57 407 aa12.7□□□□□ -0.38
COL27A1-204ENST00000477421 RFC4P35249 363 aa12.7□□□□□ -0.38
COL27A1-204ENST00000477421 PUM3Q15397 648 aaKnown RBP12.7□□□□□ -0.38
COL27A1-204ENST00000477421 TAF6LQ9Y6J9 622 aa12.7□□□□□ -0.38
COL27A1-204ENST00000477421 CCDC194A0A1B0GVG4 234 aa12.69□□□□□ -0.38
COL27A1-204ENST00000477421 BCAMP50895 628 aa12.69□□□□□ -0.38
COL27A1-204ENST00000477421 GOLGA6L1Q8N7Z2 621 aa12.69□□□□□ -0.38
COL27A1-204ENST00000477421 CLSTN2Q9H4D0 955 aa12.69□□□□□ -0.38
COL27A1-204ENST00000477421 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.69□□□□□ -0.382e-21■□□□□ 8.5
COL27A1-204ENST00000477421 EPB41L2O43491 1005 aaKnown RBP12.69□□□□□ -0.38
COL27A1-204ENST00000477421 SKIDA1Q1XH10 827 aa12.69□□□□□ -0.38
COL27A1-204ENST00000477421 UBXN4Q92575 508 aa12.69□□□□□ -0.38
COL27A1-204ENST00000477421 CABP5Q9NP86 173 aa12.69□□□□□ -0.38
COL27A1-204ENST00000477421 KRT18P05783 430 aaKnown RBP12.69□□□□□ -0.38
COL27A1-204ENST00000477421 TANGO6Q9C0B7 1094 aa12.69□□□□□ -0.38
COL27A1-204ENST00000477421 MCM9Q9NXL9 1143 aa12.69□□□□□ -0.38
COL27A1-204ENST00000477421 MAST3O60307 1309 aa12.69□□□□□ -0.38
COL27A1-204ENST00000477421 COL3A1P02461 1466 aaPredicted RBP12.68□□□□□ -0.38
COL27A1-204ENST00000477421 FAM182BQ5T319 152 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms