RNA–Protein interactions for RNA: ENST00000476519.1

SYNE1-223, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 582 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-223ENST00000476519 IPO8O15397 1037 aaKnown RBP15.1■□□□□ 0.01
SYNE1-223ENST00000476519 CA12O43570 354 aa15.1■□□□□ 0.01
SYNE1-223ENST00000476519 UBTFL1P0CB47 393 aaPredicted RBP15.1■□□□□ 0.01
SYNE1-223ENST00000476519 DLGAP5Q15398 846 aa15.1■□□□□ 0.01
SYNE1-223ENST00000476519 LRRC24Q50LG9 513 aa15.1■□□□□ 0.01
SYNE1-223ENST00000476519 FBXO33Q7Z6M2 555 aa15.1■□□□□ 0.01
SYNE1-223ENST00000476519 CERS5Q8N5B7 392 aa15.1■□□□□ 0.01
SYNE1-223ENST00000476519 GYG1P46976 350 aa15.09■□□□□ 0.01
SYNE1-223ENST00000476519 LBX1P52954 281 aa15.09■□□□□ 0.01
SYNE1-223ENST00000476519 CAVIN4Q5BKX8 364 aa15.09■□□□□ 0.01
SYNE1-223ENST00000476519 VPS37DQ86XT2 251 aa15.09■□□□□ 0.01
SYNE1-223ENST00000476519 APOBEC3FQ8IUX4 373 aaKnown RBP15.09■□□□□ 0.01
SYNE1-223ENST00000476519 FBXO3Q9UK99 471 aa15.09■□□□□ 0.01
SYNE1-223ENST00000476519 KIF16BQ96L93 1317 aa15.09■□□□□ 0.01
SYNE1-223ENST00000476519 EYA2O00167 538 aa15.08■□□□□ 0
SYNE1-223ENST00000476519 HSPA8P11142 646 aaKnown RBP15.08■□□□□ 0
SYNE1-223ENST00000476519 RFX5P48382 616 aaPredicted RBP15.08■□□□□ 0
SYNE1-223ENST00000476519 ZNF157P51786 506 aaPredicted RBP15.08■□□□□ 0
SYNE1-223ENST00000476519 INTS3Q68E01 1043 aaKnown RBP15.08■□□□□ 0
SYNE1-223ENST00000476519 VGLL2Q8N8G2 317 aa15.08■□□□□ 0
SYNE1-223ENST00000476519 TRPM7Q96QT4 1865 aa15.08■□□□□ 0
SYNE1-223ENST00000476519 FAM155AB1AL88 458 aaPredicted RBP15.07■□□□□ 0
SYNE1-223ENST00000476519 MYO1BO43795 1136 aa15.07■□□□□ 0
SYNE1-223ENST00000476519 NF2P35240 595 aa15.07■□□□□ 0
SYNE1-223ENST00000476519 PTPN12Q05209 780 aaKnown RBP15.07■□□□□ 0
SYNE1-223ENST00000476519 PUM3Q15397 648 aaKnown RBP15.07■□□□□ 0
SYNE1-223ENST00000476519 MFSD14BQ5SR56 506 aa15.07■□□□□ 0
SYNE1-223ENST00000476519 REM2Q8IYK8 340 aaPredicted RBP15.07■□□□□ 0
SYNE1-223ENST00000476519 KLHDC4Q8TBB5 520 aa15.07■□□□□ 0
SYNE1-223ENST00000476519 SPDYE2BA6NHP3 402 aa15.06■□□□□ 0
SYNE1-223ENST00000476519 CIAO1O76071 339 aa15.06■□□□□ 0
SYNE1-223ENST00000476519 IFIT1P09914 478 aaKnown RBP15.06■□□□□ 0
SYNE1-223ENST00000476519 SPDYE6P0CI01 402 aa15.06■□□□□ 0
SYNE1-223ENST00000476519 CFAP100Q494V2 611 aa15.06■□□□□ 0
SYNE1-223ENST00000476519 TBC1D22AQ8WUA7 517 aa15.06■□□□□ 0
SYNE1-223ENST00000476519 PRMT6Q96LA8 375 aaPredicted RBP15.06■□□□□ 0
SYNE1-223ENST00000476519 F8W031 263 aaPredicted RBP15.05■□□□□ -0
SYNE1-223ENST00000476519 FRAT2O75474 233 aaPredicted RBP15.05■□□□□ -0
SYNE1-223ENST00000476519 GNAI3P08754 354 aa15.05■□□□□ -0
SYNE1-223ENST00000476519 FGFR2P21802 821 aa15.05■□□□□ -0
SYNE1-223ENST00000476519 HNRNPUQ00839 825 aaKnown RBP eCLIP15.05■□□□□ -0
SYNE1-223ENST00000476519 PRAMEF18Q5VWM3 479 aa15.05■□□□□ -0
SYNE1-223ENST00000476519 LPIN2Q92539 896 aa15.05■□□□□ -0
SYNE1-223ENST00000476519 DEFB129Q9H1M3 183 aa15.05■□□□□ -0
SYNE1-223ENST00000476519 SERPINA10Q9UK55 444 aa15.05■□□□□ -0
SYNE1-223ENST00000476519 SCAF8Q9UPN6 1271 aaKnown RBP15.05■□□□□ -0
SYNE1-223ENST00000476519 JAG2Q9Y219 1238 aa15.05■□□□□ -0
SYNE1-223ENST00000476519 PPP2R3BQ9Y5P8 575 aa15.05■□□□□ -0
SYNE1-223ENST00000476519 LRRFIP2Q9Y608 721 aaKnown RBP15.05■□□□□ -0
SYNE1-223ENST00000476519 PSME4Q14997 1843 aa15.04■□□□□ -0
SYNE1-223ENST00000476519 SLC10A3P09131 477 aa15.04■□□□□ -0
SYNE1-223ENST00000476519 KIF23Q02241 960 aaPredicted RBP15.04■□□□□ -0
SYNE1-223ENST00000476519 ATF7IPQ6VMQ6 1270 aa15.04■□□□□ -0
SYNE1-223ENST00000476519 ATG9AQ7Z3C6 839 aa15.04■□□□□ -0
SYNE1-223ENST00000476519 ZIC5Q96T25 663 aa15.04■□□□□ -0
SYNE1-223ENST00000476519 MRIQ9BWK5 157 aa15.04■□□□□ -0
SYNE1-223ENST00000476519 CEP126Q9P2H0 1117 aa15.04■□□□□ -0
SYNE1-223ENST00000476519 TTF2Q9UNY4 1162 aaKnown RBP15.04■□□□□ -0
SYNE1-223ENST00000476519 UBE2Q2LH0YL09 131 aa15.03■□□□□ -0
SYNE1-223ENST00000476519 BCAR3O75815 825 aa15.03■□□□□ -0
SYNE1-223ENST00000476519 SLC5A1P13866 664 aa15.03■□□□□ -0
SYNE1-223ENST00000476519 TRIM27P14373 513 aa15.03■□□□□ -0
SYNE1-223ENST00000476519 IL15P40933 162 aaPredicted RBP15.03■□□□□ -0
SYNE1-223ENST00000476519 BCAMP50895 628 aa15.03■□□□□ -0
SYNE1-223ENST00000476519 RBM5P52756 815 aaKnown RBP eCLIP15.03■□□□□ -0
SYNE1-223ENST00000476519 HDLBPQ00341 1268 aaKnown RBP15.03■□□□□ -0
SYNE1-223ENST00000476519 TTLL12Q14166 644 aaPredicted RBP15.03■□□□□ -0
SYNE1-223ENST00000476519 SUPT20HL1Q3ZLR7 823 aa15.03■□□□□ -0
SYNE1-223ENST00000476519 ARMC9Q7Z3E5 817 aa15.03■□□□□ -0
SYNE1-223ENST00000476519 MEIS3Q99687 375 aa15.03■□□□□ -0
SYNE1-223ENST00000476519 COPRSQ9NQ92 184 aa15.03■□□□□ -0
SYNE1-223ENST00000476519 SUGT1Q9Y2Z0 365 aa15.03■□□□□ -0
SYNE1-223ENST00000476519 POLR2AP24928 1970 aaKnown RBP15.03■□□□□ -0
SYNE1-223ENST00000476519 SPEF2Q9C093 1822 aa15.03■□□□□ -0
SYNE1-223ENST00000476519 SAGE1Q9NXZ1 904 aa15.02■□□□□ -0
SYNE1-223ENST00000476519 UNCXA6NJT0 531 aa15.01□□□□□ -0.01
SYNE1-223ENST00000476519 PPP1R12BO60237 982 aaPredicted RBP15.01□□□□□ -0.01
SYNE1-223ENST00000476519 MTX1Q13505 466 aa15.01□□□□□ -0.01
SYNE1-223ENST00000476519 LDLRAD1Q5T700 205 aa15.01□□□□□ -0.01
SYNE1-223ENST00000476519 MOB2Q70IA6 237 aa15.01□□□□□ -0.01
SYNE1-223ENST00000476519 RASAL3Q86YV0 1011 aa15.01□□□□□ -0.01
SYNE1-223ENST00000476519 DZIP1LQ8IYY4 767 aaKnown RBP15.01□□□□□ -0.01
SYNE1-223ENST00000476519 FRAT1Q92837 279 aaPredicted RBP15.01□□□□□ -0.01
SYNE1-223ENST00000476519 CSRNP1Q96S65 589 aa15.01□□□□□ -0.01
SYNE1-223ENST00000476519 GNL3LQ9NVN8 582 aaKnown RBP15.01□□□□□ -0.01
SYNE1-223ENST00000476519 PCDHAC2Q9Y5I4 1007 aa15.01□□□□□ -0.01
SYNE1-223ENST00000476519 CLRN2A0PK11 232 aa15□□□□□ -0.01
SYNE1-223ENST00000476519 ZBTB22O15209 634 aa15□□□□□ -0.01
SYNE1-223ENST00000476519 GNAI2P04899 355 aa15□□□□□ -0.01
SYNE1-223ENST00000476519 CRKP46108 304 aa15□□□□□ -0.01
SYNE1-223ENST00000476519 CHAF1AQ13111 956 aaPredicted RBP15□□□□□ -0.01
SYNE1-223ENST00000476519 TNFAIP1Q13829 316 aa15□□□□□ -0.01
SYNE1-223ENST00000476519 SPDYE2Q495Y8 402 aa15□□□□□ -0.01
SYNE1-223ENST00000476519 ZKSCAN2Q63HK3 967 aa15□□□□□ -0.01
SYNE1-223ENST00000476519 WDR66Q8TBY9 1149 aa15□□□□□ -0.01
SYNE1-223ENST00000476519 SIL1Q9H173 461 aa15□□□□□ -0.01
SYNE1-223ENST00000476519 VEZTQ9HBM0 779 aa15□□□□□ -0.01
SYNE1-223ENST00000476519 IQSEC3Q9UPP2 1182 aaPredicted RBP15□□□□□ -0.01
SYNE1-223ENST00000476519 COL1A1P02452 1464 aaPredicted RBP15□□□□□ -0.01
SYNE1-223ENST00000476519 THSD7BQ9C0I4 1608 aa14.99□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms