RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 RABL6Q3YEC7 729 aaPredicted RBP15.52■□□□□ 0.08
MSH5-SAPCD1-205ENST00000476085 LDLRAD1Q5T700 205 aa15.52■□□□□ 0.08
MSH5-SAPCD1-205ENST00000476085 APOBEC3FQ8IUX4 373 aaKnown RBP15.52■□□□□ 0.08
MSH5-SAPCD1-205ENST00000476085 FAM205AQ6ZU69 1335 aa15.51■□□□□ 0.07
MSH5-SAPCD1-205ENST00000476085 TM4SF4P48230 202 aa15.51■□□□□ 0.07
MSH5-SAPCD1-205ENST00000476085 UBE4AQ14139 1066 aa15.51■□□□□ 0.07
MSH5-SAPCD1-205ENST00000476085 ZNF804AQ7Z570 1209 aa15.51■□□□□ 0.07
MSH5-SAPCD1-205ENST00000476085 TDRD7Q8NHU6 1098 aaKnown RBP15.51■□□□□ 0.07
MSH5-SAPCD1-205ENST00000476085 PUS3Q9BZE2 481 aaKnown RBP15.51■□□□□ 0.07
MSH5-SAPCD1-205ENST00000476085 CHMP3Q9Y3E7 222 aa15.51■□□□□ 0.07
MSH5-SAPCD1-205ENST00000476085 PCDHAC2Q9Y5I4 1007 aa15.51■□□□□ 0.07
MSH5-SAPCD1-205ENST00000476085 PTPN12Q05209 780 aaKnown RBP15.5■□□□□ 0.07
MSH5-SAPCD1-205ENST00000476085 DGKZQ13574 1117 aa15.5■□□□□ 0.07
MSH5-SAPCD1-205ENST00000476085 MAP3K11Q16584 847 aa15.5■□□□□ 0.07
MSH5-SAPCD1-205ENST00000476085 SLC4A10Q6U841 1118 aa15.5■□□□□ 0.07
MSH5-SAPCD1-205ENST00000476085 FAM84BQ96KN1 310 aaPredicted RBP15.5■□□□□ 0.07
MSH5-SAPCD1-205ENST00000476085 COL1A1P02452 1464 aaPredicted RBP15.5■□□□□ 0.07
MSH5-SAPCD1-205ENST00000476085 AOX1Q06278 1338 aa15.49■□□□□ 0.07
MSH5-SAPCD1-205ENST00000476085 SPDYE2BA6NHP3 402 aa15.49■□□□□ 0.07
MSH5-SAPCD1-205ENST00000476085 SPDYE6P0CI01 402 aa15.49■□□□□ 0.07
MSH5-SAPCD1-205ENST00000476085 SLFN5Q08AF3 891 aa15.49■□□□□ 0.07
MSH5-SAPCD1-205ENST00000476085 DLGAP5Q15398 846 aa15.49■□□□□ 0.07
MSH5-SAPCD1-205ENST00000476085 TRMT2AQ8IZ69 625 aaKnown RBP15.49■□□□□ 0.07
MSH5-SAPCD1-205ENST00000476085 ANKRD44Q8N8A2 993 aa15.49■□□□□ 0.07
MSH5-SAPCD1-205ENST00000476085 PRMT6Q96LA8 375 aaPredicted RBP15.49■□□□□ 0.07
MSH5-SAPCD1-205ENST00000476085 DEFB129Q9H1M3 183 aa15.49■□□□□ 0.07
MSH5-SAPCD1-205ENST00000476085 CNNM1Q9NRU3 951 aa15.49■□□□□ 0.07
MSH5-SAPCD1-205ENST00000476085 LAMB1P07942 1786 aa15.49■□□□□ 0.07
MSH5-SAPCD1-205ENST00000476085 PTPRCP08575 1304 aa15.48■□□□□ 0.07
MSH5-SAPCD1-205ENST00000476085 CCDC85CA6NKD9 419 aa15.48■□□□□ 0.07
MSH5-SAPCD1-205ENST00000476085 E9PSI1 815 aa15.48■□□□□ 0.07
MSH5-SAPCD1-205ENST00000476085 PLIN1O60240 522 aa15.48■□□□□ 0.07
MSH5-SAPCD1-205ENST00000476085 NF2P35240 595 aa15.48■□□□□ 0.07
MSH5-SAPCD1-205ENST00000476085 CFAP100Q494V2 611 aa15.48■□□□□ 0.07
MSH5-SAPCD1-205ENST00000476085 NOM1Q5C9Z4 860 aaKnown RBP15.48■□□□□ 0.07
MSH5-SAPCD1-205ENST00000476085 FBXO33Q7Z6M2 555 aa15.48■□□□□ 0.07
MSH5-SAPCD1-205ENST00000476085 VGLL2Q8N8G2 317 aa15.48■□□□□ 0.07
MSH5-SAPCD1-205ENST00000476085 SSH1Q8WYL5 1049 aa15.48■□□□□ 0.07
MSH5-SAPCD1-205ENST00000476085 CFHR5Q9BXR6 569 aa15.48■□□□□ 0.07
MSH5-SAPCD1-205ENST00000476085 USP44Q9H0E7 712 aa15.48■□□□□ 0.07
MSH5-SAPCD1-205ENST00000476085 BICC1Q9H694 974 aaKnown RBP15.48■□□□□ 0.07
MSH5-SAPCD1-205ENST00000476085 SSC5DA1L4H1 1573 aa15.48■□□□□ 0.07
MSH5-SAPCD1-205ENST00000476085 TAF7LQ5H9L4 462 aa15.47■□□□□ 0.07
MSH5-SAPCD1-205ENST00000476085 ARMC9Q7Z3E5 817 aa15.47■□□□□ 0.07
MSH5-SAPCD1-205ENST00000476085 PPP2R3BQ9Y5P8 575 aa15.47■□□□□ 0.07
MSH5-SAPCD1-205ENST00000476085 TNRC18O15417 2968 aaPredicted RBP15.47■□□□□ 0.07
MSH5-SAPCD1-205ENST00000476085 MROH5Q6ZUA9 1318 aa15.46■□□□□ 0.07
MSH5-SAPCD1-205ENST00000476085 UNCXA6NJT0 531 aa15.46■□□□□ 0.07
MSH5-SAPCD1-205ENST00000476085 HIBADHP31937 336 aaKnown RBP15.46■□□□□ 0.07
MSH5-SAPCD1-205ENST00000476085 GYG1P46976 350 aa15.46■□□□□ 0.07
MSH5-SAPCD1-205ENST00000476085 LRRC24Q50LG9 513 aa15.46■□□□□ 0.07
MSH5-SAPCD1-205ENST00000476085 ARAP2Q8WZ64 1704 aa15.46■□□□□ 0.06
MSH5-SAPCD1-205ENST00000476085 F8W031 263 aaPredicted RBP15.45■□□□□ 0.06
MSH5-SAPCD1-205ENST00000476085 TTLL12Q14166 644 aaPredicted RBP15.45■□□□□ 0.06
MSH5-SAPCD1-205ENST00000476085 SPRYD7Q5W111 196 aa15.45■□□□□ 0.06
MSH5-SAPCD1-205ENST00000476085 SERPINA10Q9UK55 444 aa15.45■□□□□ 0.06
MSH5-SAPCD1-205ENST00000476085 FZD1Q9UP38 647 aa15.45■□□□□ 0.06
MSH5-SAPCD1-205ENST00000476085 JAG2Q9Y219 1238 aa15.45■□□□□ 0.06
MSH5-SAPCD1-205ENST00000476085 ALDH1L2Q3SY69 923 aa15.44■□□□□ 0.06
MSH5-SAPCD1-205ENST00000476085 MFSD14BQ5SR56 506 aa15.44■□□□□ 0.06
MSH5-SAPCD1-205ENST00000476085 ANGEL1Q9UNK9 670 aaKnown RBP15.44■□□□□ 0.06
MSH5-SAPCD1-205ENST00000476085 CLRN2A0PK11 232 aa15.43■□□□□ 0.06
MSH5-SAPCD1-205ENST00000476085 USP2O75604 605 aaPredicted RBP15.43■□□□□ 0.06
MSH5-SAPCD1-205ENST00000476085 PDE8BO95263 885 aa15.43■□□□□ 0.06
MSH5-SAPCD1-205ENST00000476085 TBC1D8O95759 1140 aa15.43■□□□□ 0.06
MSH5-SAPCD1-205ENST00000476085 FGFR2P21802 821 aa15.43■□□□□ 0.06
MSH5-SAPCD1-205ENST00000476085 RFX5P48382 616 aaPredicted RBP15.43■□□□□ 0.06
MSH5-SAPCD1-205ENST00000476085 PRKG1Q13976 671 aa15.43■□□□□ 0.06
MSH5-SAPCD1-205ENST00000476085 GRIK5Q16478 980 aa15.43■□□□□ 0.06
MSH5-SAPCD1-205ENST00000476085 SPDYE2Q495Y8 402 aa15.43■□□□□ 0.06
MSH5-SAPCD1-205ENST00000476085 NBPF12Q5TAG4 269 aaPredicted RBP15.43■□□□□ 0.06
MSH5-SAPCD1-205ENST00000476085 CTU1Q7Z7A3 348 aaKnown RBP15.43■□□□□ 0.06
MSH5-SAPCD1-205ENST00000476085 ZNF296Q8WUU4 475 aaPredicted RBP15.43■□□□□ 0.06
MSH5-SAPCD1-205ENST00000476085 CDCA7LQ96GN5 454 aa15.43■□□□□ 0.06
MSH5-SAPCD1-205ENST00000476085 R3HDMLQ9H3Y0 253 aa15.43■□□□□ 0.06
MSH5-SAPCD1-205ENST00000476085 MYO1BO43795 1136 aa15.42■□□□□ 0.06
MSH5-SAPCD1-205ENST00000476085 PPP1R12BO60237 982 aaPredicted RBP15.42■□□□□ 0.06
MSH5-SAPCD1-205ENST00000476085 MLLT1Q03111 559 aaPredicted RBP15.42■□□□□ 0.06
MSH5-SAPCD1-205ENST00000476085 RASA3Q14644 834 aa15.42■□□□□ 0.06
MSH5-SAPCD1-205ENST00000476085 SUPT20HL1Q3ZLR7 823 aa15.42■□□□□ 0.06
MSH5-SAPCD1-205ENST00000476085 DZIP1LQ8IYY4 767 aaKnown RBP15.42■□□□□ 0.06
MSH5-SAPCD1-205ENST00000476085 TEPSINQ96N21 525 aa15.42■□□□□ 0.06
MSH5-SAPCD1-205ENST00000476085 MRIQ9BWK5 157 aa15.42■□□□□ 0.06
MSH5-SAPCD1-205ENST00000476085 ZNF70Q9UC06 446 aaPredicted RBP15.42■□□□□ 0.06
MSH5-SAPCD1-205ENST00000476085 TTF2Q9UNY4 1162 aaKnown RBP15.42■□□□□ 0.06
MSH5-SAPCD1-205ENST00000476085 KIF16BQ96L93 1317 aa15.42■□□□□ 0.06
MSH5-SAPCD1-205ENST00000476085 PDE4DIPQ5VU43 2346 aa15.42■□□□□ 0.06
MSH5-SAPCD1-205ENST00000476085 GPR25O00155 361 aa15.41■□□□□ 0.06
MSH5-SAPCD1-205ENST00000476085 ZBTB48P10074 688 aaPredicted RBP15.41■□□□□ 0.06
MSH5-SAPCD1-205ENST00000476085 INHBEP58166 350 aa15.41■□□□□ 0.06
MSH5-SAPCD1-205ENST00000476085 HDLBPQ00341 1268 aaKnown RBP15.41■□□□□ 0.06
MSH5-SAPCD1-205ENST00000476085 SREBF2Q12772 1141 aa15.41■□□□□ 0.06
MSH5-SAPCD1-205ENST00000476085 KLHDC4Q8TBB5 520 aa15.41■□□□□ 0.06
MSH5-SAPCD1-205ENST00000476085 SLC10A4Q96EP9 437 aa15.41■□□□□ 0.06
MSH5-SAPCD1-205ENST00000476085 CLMNQ96JQ2 1002 aa15.41■□□□□ 0.06
MSH5-SAPCD1-205ENST00000476085 MKRN3Q13064 507 aaKnown RBP15.4■□□□□ 0.06
MSH5-SAPCD1-205ENST00000476085 PKN2Q16513 984 aaKnown RBP15.4■□□□□ 0.06
MSH5-SAPCD1-205ENST00000476085 WNK4Q96J92 1243 aa15.4■□□□□ 0.06
MSH5-SAPCD1-205ENST00000476085 TDRD3Q9H7E2 651 aaKnown RBP15.4■□□□□ 0.06
MSH5-SAPCD1-205ENST00000476085 HTTP42858 3142 aa15.4■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 236.6 ms