RNA–Protein interactions for RNA: ENST00000475549.1

HDAC3-207, Transcript of histone deacetylase 3, humanhuman

TSL 2

Gene HDAC3, Length 297 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-207ENST00000475549 TRPA1O75762 1119 aa8.9□□□□□ -0.98
HDAC3-207ENST00000475549 SLFN5Q08AF3 891 aa8.9□□□□□ -0.98
HDAC3-207ENST00000475549 CCDC57Q2TAC2 916 aa8.9□□□□□ -0.98
HDAC3-207ENST00000475549 FAM84BQ96KN1 310 aaPredicted RBP8.9□□□□□ -0.98
HDAC3-207ENST00000475549 PRMT6Q96LA8 375 aaPredicted RBP8.9□□□□□ -0.98
HDAC3-207ENST00000475549 USP44Q9H0E7 712 aa8.9□□□□□ -0.98
HDAC3-207ENST00000475549 F8W031 263 aaPredicted RBP8.89□□□□□ -0.99
HDAC3-207ENST00000475549 GYG1P46976 350 aa8.89□□□□□ -0.99
HDAC3-207ENST00000475549 MMP14P50281 582 aa8.89□□□□□ -0.99
HDAC3-207ENST00000475549 PTPN12Q05209 780 aaKnown RBP8.89□□□□□ -0.99
HDAC3-207ENST00000475549 RABL6Q3YEC7 729 aaPredicted RBP8.89□□□□□ -0.99
HDAC3-207ENST00000475549 LDLRAD1Q5T700 205 aa8.89□□□□□ -0.99
HDAC3-207ENST00000475549 TRMT2AQ8IZ69 625 aaKnown RBP8.89□□□□□ -0.99
HDAC3-207ENST00000475549 MTMR14Q8NCE2 650 aa8.89□□□□□ -0.99
HDAC3-207ENST00000475549 TDRD7Q8NHU6 1098 aaKnown RBP8.89□□□□□ -0.99
HDAC3-207ENST00000475549 DEFB129Q9H1M3 183 aa8.89□□□□□ -0.99
HDAC3-207ENST00000475549 BICC1Q9H694 974 aaKnown RBP8.89□□□□□ -0.99
HDAC3-207ENST00000475549 SAGE1Q9NXZ1 904 aa8.89□□□□□ -0.99
HDAC3-207ENST00000475549 TRPM7Q96QT4 1865 aa8.89□□□□□ -0.99
HDAC3-207ENST00000475549 CCDC85CA6NKD9 419 aa8.88□□□□□ -0.99
HDAC3-207ENST00000475549 E9PSI1 815 aa8.88□□□□□ -0.99
HDAC3-207ENST00000475549 FKBP1AP62942 108 aaKnown RBP8.88□□□□□ -0.99
HDAC3-207ENST00000475549 PRKG1Q13976 671 aa8.88□□□□□ -0.99
HDAC3-207ENST00000475549 UBE4AQ14139 1066 aa8.88□□□□□ -0.99
HDAC3-207ENST00000475549 DLGAP5Q15398 846 aa8.88□□□□□ -0.99
HDAC3-207ENST00000475549 GRIK5Q16478 980 aa8.88□□□□□ -0.99
HDAC3-207ENST00000475549 LRRC24Q50LG9 513 aa8.88□□□□□ -0.99
HDAC3-207ENST00000475549 ZNF804AQ7Z570 1209 aa8.88□□□□□ -0.99
HDAC3-207ENST00000475549 KLHDC4Q8TBB5 520 aa8.88□□□□□ -0.99
HDAC3-207ENST00000475549 CNNM1Q9NRU3 951 aa8.88□□□□□ -0.99
HDAC3-207ENST00000475549 FAM205AQ6ZU69 1335 aa8.87□□□□□ -0.99
HDAC3-207ENST00000475549 CLRN2A0PK11 232 aa8.87□□□□□ -0.99
HDAC3-207ENST00000475549 SPDYE2BA6NHP3 402 aa8.87□□□□□ -0.99
HDAC3-207ENST00000475549 SPDYE6P0CI01 402 aa8.87□□□□□ -0.99
HDAC3-207ENST00000475549 HIBADHP31937 336 aaKnown RBP8.87□□□□□ -0.99
HDAC3-207ENST00000475549 TM4SF4P48230 202 aa8.87□□□□□ -0.99
HDAC3-207ENST00000475549 RFX5P48382 616 aaPredicted RBP8.87□□□□□ -0.99
HDAC3-207ENST00000475549 RGS19P49795 217 aa8.87□□□□□ -0.99
HDAC3-207ENST00000475549 MKRN3Q13064 507 aaKnown RBP8.87□□□□□ -0.99
HDAC3-207ENST00000475549 DGKZQ13574 1117 aa8.87□□□□□ -0.99
HDAC3-207ENST00000475549 CFAP100Q494V2 611 aa8.87□□□□□ -0.99
HDAC3-207ENST00000475549 TAF7LQ5H9L4 462 aa8.87□□□□□ -0.99
HDAC3-207ENST00000475549 FBXO33Q7Z6M2 555 aa8.87□□□□□ -0.99
HDAC3-207ENST00000475549 VGLL2Q8N8G2 317 aa8.87□□□□□ -0.99
HDAC3-207ENST00000475549 R3HDMLQ9H3Y0 253 aa8.87□□□□□ -0.99
HDAC3-207ENST00000475549 HDAC9Q9UKV0 1011 aa8.87□□□□□ -0.99
HDAC3-207ENST00000475549 PTPRCP08575 1304 aa8.86□□□□□ -0.99
HDAC3-207ENST00000475549 TBC1D8O95759 1140 aa8.86□□□□□ -0.99
HDAC3-207ENST00000475549 TTLL12Q14166 644 aaPredicted RBP8.86□□□□□ -0.99
HDAC3-207ENST00000475549 MAP3K11Q16584 847 aa8.86□□□□□ -0.99
HDAC3-207ENST00000475549 MFSD14BQ5SR56 506 aa8.86□□□□□ -0.99
HDAC3-207ENST00000475549 APOBEC3FQ8IUX4 373 aaKnown RBP8.86□□□□□ -0.99
HDAC3-207ENST00000475549 CDAN1Q8IWY9 1227 aa8.86□□□□□ -0.99
HDAC3-207ENST00000475549 CLMNQ96JQ2 1002 aa8.86□□□□□ -0.99
HDAC3-207ENST00000475549 RNF39Q9H2S5 420 aa8.86□□□□□ -0.99
HDAC3-207ENST00000475549 ZNF646O15015 1829 aaPredicted RBP8.86□□□□□ -0.99
HDAC3-207ENST00000475549 SSC5DA1L4H1 1573 aa8.86□□□□□ -0.99
HDAC3-207ENST00000475549 MROH5Q6ZUA9 1318 aa8.85□□□□□ -0.99
HDAC3-207ENST00000475549 POLR2AP24928 1970 aaKnown RBP8.85□□□□□ -0.99
HDAC3-207ENST00000475549 USP2O75604 605 aaPredicted RBP8.85□□□□□ -0.99
HDAC3-207ENST00000475549 PDE8BO95263 885 aa8.85□□□□□ -0.99
HDAC3-207ENST00000475549 BCAMP50895 628 aa8.85□□□□□ -0.99
HDAC3-207ENST00000475549 NBPF12Q5TAG4 269 aaPredicted RBP8.85□□□□□ -0.99
HDAC3-207ENST00000475549 SPRYD7Q5W111 196 aa8.85□□□□□ -0.99
HDAC3-207ENST00000475549 REM2Q8IYK8 340 aaPredicted RBP8.85□□□□□ -0.99
HDAC3-207ENST00000475549 ANGEL1Q9UNK9 670 aaKnown RBP8.85□□□□□ -0.99
HDAC3-207ENST00000475549 IQSEC3Q9UPP2 1182 aaPredicted RBP8.85□□□□□ -0.99
HDAC3-207ENST00000475549 FGFR2P21802 821 aa8.84□□□□□ -0.99
HDAC3-207ENST00000475549 NF2P35240 595 aa8.84□□□□□ -0.99
HDAC3-207ENST00000475549 RASA3Q14644 834 aa8.84□□□□□ -0.99
HDAC3-207ENST00000475549 ALDH1L2Q3SY69 923 aa8.84□□□□□ -0.99
HDAC3-207ENST00000475549 SPDYE2Q495Y8 402 aa8.84□□□□□ -0.99
HDAC3-207ENST00000475549 ATG9AQ7Z3C6 839 aa8.84□□□□□ -0.99
HDAC3-207ENST00000475549 ARMC9Q7Z3E5 817 aa8.84□□□□□ -0.99
HDAC3-207ENST00000475549 DZIP1LQ8IYY4 767 aaKnown RBP8.84□□□□□ -0.99
HDAC3-207ENST00000475549 ZNF296Q8WUU4 475 aaPredicted RBP8.84□□□□□ -0.99
HDAC3-207ENST00000475549 TEPSINQ96N21 525 aa8.84□□□□□ -0.99
HDAC3-207ENST00000475549 TDRD3Q9H7E2 651 aaKnown RBP8.84□□□□□ -0.99
HDAC3-207ENST00000475549 VEZTQ9HBM0 779 aa8.84□□□□□ -0.99
HDAC3-207ENST00000475549 ZNF70Q9UC06 446 aaPredicted RBP8.84□□□□□ -0.99
HDAC3-207ENST00000475549 SERPINA10Q9UK55 444 aa8.84□□□□□ -0.99
HDAC3-207ENST00000475549 TTF2Q9UNY4 1162 aaKnown RBP8.84□□□□□ -0.99
HDAC3-207ENST00000475549 PSME4Q14997 1843 aa8.83□□□□□ -1
HDAC3-207ENST00000475549 MYO1BO43795 1136 aa8.83□□□□□ -1
HDAC3-207ENST00000475549 GJA5P36382 358 aa8.83□□□□□ -1
HDAC3-207ENST00000475549 CRKP46108 304 aa8.83□□□□□ -1
HDAC3-207ENST00000475549 RBM5P52756 815 aaKnown RBP eCLIP8.83□□□□□ -1
HDAC3-207ENST00000475549 METTL24Q5JXM2 366 aa8.83□□□□□ -1
HDAC3-207ENST00000475549 SLC10A4Q96EP9 437 aa8.83□□□□□ -1
HDAC3-207ENST00000475549 NOB1Q9ULX3 412 aaKnown RBP8.83□□□□□ -1
HDAC3-207ENST00000475549 PPP2R3BQ9Y5P8 575 aa8.83□□□□□ -1
HDAC3-207ENST00000475549 PAPPA2Q9BXP8 1791 aa8.83□□□□□ -1
HDAC3-207ENST00000475549 SPEF2Q9C093 1822 aa8.82□□□□□ -1
HDAC3-207ENST00000475549 GPR25O00155 361 aa8.82□□□□□ -1
HDAC3-207ENST00000475549 EYA2O00167 538 aa8.82□□□□□ -1
HDAC3-207ENST00000475549 IGF2BP3O00425 579 aaKnown RBP eCLIP8.82□□□□□ -1
HDAC3-207ENST00000475549 CACNB3P54284 484 aa8.82□□□□□ -1
HDAC3-207ENST00000475549 C1QBPQ07021 282 aaKnown RBP8.82□□□□□ -1
HDAC3-207ENST00000475549 SUPT20HL1Q3ZLR7 823 aa8.82□□□□□ -1
HDAC3-207ENST00000475549 APOBEC3HQ6NTF7 200 aaKnown RBP8.82□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms