RNA–Protein interactions for RNA: ENST00000474056.5

UPF3A-203, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 748 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-203ENST00000474056 HIBADHP31937 336 aaKnown RBP22.43■■□□□ 1.18
UPF3A-203ENST00000474056 TDRD7Q8NHU6 1098 aaKnown RBP22.43■■□□□ 1.18
UPF3A-203ENST00000474056 CLUAP1Q96AJ1 413 aa22.43■■□□□ 1.18
UPF3A-203ENST00000474056 CAPNS2Q96L46 248 aa22.43■■□□□ 1.18
UPF3A-203ENST00000474056 HDAC9Q9UKV0 1011 aa22.43■■□□□ 1.18
UPF3A-203ENST00000474056 GRM1Q13255 1194 aa22.42■■□□□ 1.18
UPF3A-203ENST00000474056 F8W031 263 aaPredicted RBP22.41■■□□□ 1.18
UPF3A-203ENST00000474056 MMP14P50281 582 aa22.41■■□□□ 1.18
UPF3A-203ENST00000474056 FKBP1AP62942 108 aaKnown RBP22.41■■□□□ 1.18
UPF3A-203ENST00000474056 ATG9AQ7Z3C6 839 aa22.41■■□□□ 1.18
UPF3A-203ENST00000474056 CDCA5Q96FF9 252 aa22.41■■□□□ 1.18
UPF3A-203ENST00000474056 SIL1Q9H173 461 aa22.41■■□□□ 1.18
UPF3A-203ENST00000474056 HDAC5Q9UQL6 1122 aa22.41■■□□□ 1.18
UPF3A-203ENST00000474056 FAM205AQ6ZU69 1335 aa22.4■■□□□ 1.18
UPF3A-203ENST00000474056 GNAI3P08754 354 aa22.4■■□□□ 1.18
UPF3A-203ENST00000474056 FGFR2P21802 821 aa22.4■■□□□ 1.18
UPF3A-203ENST00000474056 ECE1P42892 770 aa22.4■■□□□ 1.18
UPF3A-203ENST00000474056 ZKSCAN2Q63HK3 967 aa22.4■■□□□ 1.18
UPF3A-203ENST00000474056 FBXO33Q7Z6M2 555 aa22.4■■□□□ 1.18
UPF3A-203ENST00000474056 ZBED3Q96IU2 234 aaPredicted RBP22.4■■□□□ 1.18
UPF3A-203ENST00000474056 GBA2Q9HCG7 927 aaPredicted RBP22.4■■□□□ 1.18
UPF3A-203ENST00000474056 HHIPL1Q96JK4 782 aa22.39■■□□□ 1.17
UPF3A-203ENST00000474056 IQSEC3Q9UPP2 1182 aaPredicted RBP22.39■■□□□ 1.17
UPF3A-203ENST00000474056 PA2G4Q9UQ80 394 aaKnown RBP22.39■■□□□ 1.17
UPF3A-203ENST00000474056 PCDHAC2Q9Y5I4 1007 aa22.39■■□□□ 1.17
UPF3A-203ENST00000474056 PAPPA2Q9BXP8 1791 aa22.38■■□□□ 1.17
UPF3A-203ENST00000474056 HUNKP57058 714 aa22.38■■□□□ 1.17
UPF3A-203ENST00000474056 PUM3Q15397 648 aaKnown RBP22.38■■□□□ 1.17
UPF3A-203ENST00000474056 VPS37DQ86XT2 251 aa22.38■■□□□ 1.17
UPF3A-203ENST00000474056 TMEM57Q8N5G2 664 aa22.38■■□□□ 1.17
UPF3A-203ENST00000474056 BCAMP50895 628 aa22.37■■□□□ 1.17
UPF3A-203ENST00000474056 CAVIN4Q5BKX8 364 aa22.37■■□□□ 1.17
UPF3A-203ENST00000474056 MFSD14BQ5SR56 506 aa22.37■■□□□ 1.17
UPF3A-203ENST00000474056 C2orf69Q8N8R5 385 aa22.37■■□□□ 1.17
UPF3A-203ENST00000474056 FBXO3Q9UK99 471 aa22.37■■□□□ 1.17
UPF3A-203ENST00000474056 FOXN1O15353 648 aa22.36■■□□□ 1.17
UPF3A-203ENST00000474056 AOC2O75106 756 aa22.36■■□□□ 1.17
UPF3A-203ENST00000474056 CIAO1O76071 339 aa22.36■■□□□ 1.17
UPF3A-203ENST00000474056 IFIT1P09914 478 aaKnown RBP22.36■■□□□ 1.17
UPF3A-203ENST00000474056 PRAMEF18Q5VWM3 479 aa22.36■■□□□ 1.17
UPF3A-203ENST00000474056 WBP1LQ9NX94 342 aa22.36■■□□□ 1.17
UPF3A-203ENST00000474056 DLGAP5Q15398 846 aa22.35■■□□□ 1.17
UPF3A-203ENST00000474056 CFAP100Q494V2 611 aa22.35■■□□□ 1.17
UPF3A-203ENST00000474056 MTMR14Q8NCE2 650 aa22.35■■□□□ 1.17
UPF3A-203ENST00000474056 COPRSQ9NQ92 184 aa22.35■■□□□ 1.17
UPF3A-203ENST00000474056 SLC5A1P13866 664 aa22.34■■□□□ 1.17
UPF3A-203ENST00000474056 CHAF1AQ13111 956 aaPredicted RBP22.34■■□□□ 1.17
UPF3A-203ENST00000474056 MTX1Q13505 466 aa22.34■■□□□ 1.17
UPF3A-203ENST00000474056 COL13A1Q5TAT6 717 aaPredicted RBP22.34■■□□□ 1.17
UPF3A-203ENST00000474056 LPIN2Q92539 896 aa22.34■■□□□ 1.17
UPF3A-203ENST00000474056 AOX1Q06278 1338 aa22.33■■□□□ 1.17
UPF3A-203ENST00000474056 SRGAP3O43295 1099 aa22.33■■□□□ 1.17
UPF3A-203ENST00000474056 FRAT2O75474 233 aaPredicted RBP22.33■■□□□ 1.17
UPF3A-203ENST00000474056 IL15P40933 162 aaPredicted RBP22.33■■□□□ 1.17
UPF3A-203ENST00000474056 MAP2K1Q02750 393 aaPredicted RBP22.33■■□□□ 1.17
UPF3A-203ENST00000474056 APOBEC3FQ8IUX4 373 aaKnown RBP22.33■■□□□ 1.17
UPF3A-203ENST00000474056 AIDAQ96BJ3 306 aa22.33■■□□□ 1.17
UPF3A-203ENST00000474056 CEP126Q9P2H0 1117 aa22.33■■□□□ 1.17
UPF3A-203ENST00000474056 SPDYE2BA6NHP3 402 aa22.32■■□□□ 1.16
UPF3A-203ENST00000474056 GNAI2P04899 355 aa22.32■■□□□ 1.16
UPF3A-203ENST00000474056 SPDYE6P0CI01 402 aa22.32■■□□□ 1.16
UPF3A-203ENST00000474056 GRIK5Q16478 980 aa22.32■■□□□ 1.16
UPF3A-203ENST00000474056 RGMBQ6NW40 437 aa22.32■■□□□ 1.16
UPF3A-203ENST00000474056 TTF2Q9UNY4 1162 aaKnown RBP22.32■■□□□ 1.16
UPF3A-203ENST00000474056 COL1A1P02452 1464 aaPredicted RBP22.31■■□□□ 1.16
UPF3A-203ENST00000474056 RLBP1P12271 317 aa22.31■■□□□ 1.16
UPF3A-203ENST00000474056 MAP2K2P36507 400 aa22.31■■□□□ 1.16
UPF3A-203ENST00000474056 RBM5P52756 815 aaKnown RBP eCLIP22.31■■□□□ 1.16
UPF3A-203ENST00000474056 ATP2B3Q16720 1220 aa22.31■■□□□ 1.16
UPF3A-203ENST00000474056 FTSJ3Q8IY81 847 aaKnown RBP22.31■■□□□ 1.16
UPF3A-203ENST00000474056 DZIP1LQ8IYY4 767 aaKnown RBP22.31■■□□□ 1.16
UPF3A-203ENST00000474056 PRMT6Q96LA8 375 aaPredicted RBP22.31■■□□□ 1.16
UPF3A-203ENST00000474056 PNMA6EA0A0J9YXQ4 647 aa22.3■■□□□ 1.16
UPF3A-203ENST00000474056 CLRN2A0PK11 232 aa22.3■■□□□ 1.16
UPF3A-203ENST00000474056 MOB2Q70IA6 237 aa22.3■■□□□ 1.16
UPF3A-203ENST00000474056 ZIC5Q96T25 663 aa22.3■■□□□ 1.16
UPF3A-203ENST00000474056 AKAP11Q9UKA4 1901 aa22.29■■□□□ 1.16
UPF3A-203ENST00000474056 FAM155AB1AL88 458 aaPredicted RBP22.29■■□□□ 1.16
UPF3A-203ENST00000474056 TBC1D22AQ8WUA7 517 aa22.29■■□□□ 1.16
UPF3A-203ENST00000474056 SERPINA10Q9UK55 444 aa22.29■■□□□ 1.16
UPF3A-203ENST00000474056 CTCFP49711 727 aaPredicted RBP22.28■■□□□ 1.16
UPF3A-203ENST00000474056 ZNF157P51786 506 aaPredicted RBP22.28■■□□□ 1.16
UPF3A-203ENST00000474056 FKBP1BP68106 108 aa22.28■■□□□ 1.16
UPF3A-203ENST00000474056 ITPRIPQ8IWB1 547 aa22.28■■□□□ 1.16
UPF3A-203ENST00000474056 MYO1BO43795 1136 aa22.27■■□□□ 1.16
UPF3A-203ENST00000474056 CRKP46108 304 aa22.27■■□□□ 1.16
UPF3A-203ENST00000474056 NOGQ13253 232 aa22.27■■□□□ 1.16
UPF3A-203ENST00000474056 DEFB129Q9H1M3 183 aa22.27■■□□□ 1.16
UPF3A-203ENST00000474056 VEZTQ9HBM0 779 aa22.27■■□□□ 1.16
UPF3A-203ENST00000474056 SLC10A3P09131 477 aa22.26■■□□□ 1.15
UPF3A-203ENST00000474056 HSPA8P11142 646 aaKnown RBP22.26■■□□□ 1.15
UPF3A-203ENST00000474056 ADORA1P30542 326 aa22.26■■□□□ 1.15
UPF3A-203ENST00000474056 NF2P35240 595 aa22.26■■□□□ 1.15
UPF3A-203ENST00000474056 C1orf115Q9H7X2 142 aa22.26■■□□□ 1.15
UPF3A-203ENST00000474056 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP22.26■■□□□ 1.15
UPF3A-203ENST00000474056 SSC5DA1L4H1 1573 aa22.25■■□□□ 1.15
UPF3A-203ENST00000474056 UBE2Q2LH0YL09 131 aa22.25■■□□□ 1.15
UPF3A-203ENST00000474056 PHKA1P46020 1223 aa22.25■■□□□ 1.15
UPF3A-203ENST00000474056 LBX1P52954 281 aa22.25■■□□□ 1.15
UPF3A-203ENST00000474056 TFCP2Q12800 502 aa22.25■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms