RNA–Protein interactions for RNA: ENST00000467885.6

USP39-213, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 338 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-213ENST00000467885 MPNDQ8N594 471 aa7.31□□□□□ -1.24
USP39-213ENST00000467885 NLGN2Q8NFZ4 835 aa7.31□□□□□ -1.24
USP39-213ENST00000467885 TBC1D16Q8TBP0 767 aa7.31□□□□□ -1.24
USP39-213ENST00000467885 PI4K2BQ8TCG2 481 aa7.31□□□□□ -1.24
USP39-213ENST00000467885 ZNF512BQ96KM6 892 aaPredicted RBP7.31□□□□□ -1.24
USP39-213ENST00000467885 BCL11AQ9H165 835 aa7.31□□□□□ -1.24
USP39-213ENST00000467885 ECHDC1Q9NTX5 307 aa7.31□□□□□ -1.24
USP39-213ENST00000467885 TAOK2Q9UL54 1235 aa7.31□□□□□ -1.24
USP39-213ENST00000467885 COL4A1P02462 1669 aa7.31□□□□□ -1.24
USP39-213ENST00000467885 SCN7AQ01118 1682 aa7.31□□□□□ -1.24
USP39-213ENST00000467885 ZNF804BA4D1E1 1349 aa7.3□□□□□ -1.24
USP39-213ENST00000467885 C10orf71Q711Q0 1435 aa7.3□□□□□ -1.24
USP39-213ENST00000467885 TUBGCP6Q96RT7 1819 aa7.3□□□□□ -1.24
USP39-213ENST00000467885 PPEF1O14829 653 aaPredicted RBP7.3□□□□□ -1.24
USP39-213ENST00000467885 C21orf2O43822 256 aa7.3□□□□□ -1.24
USP39-213ENST00000467885 IFIT2P09913 472 aaKnown RBP7.3□□□□□ -1.24
USP39-213ENST00000467885 ATP2B4P23634 1241 aa7.3□□□□□ -1.24
USP39-213ENST00000467885 RGS3P49796 1198 aa7.3□□□□□ -1.24
USP39-213ENST00000467885 PUM3Q15397 648 aaKnown RBP7.3□□□□□ -1.24
USP39-213ENST00000467885 ATP2B3Q16720 1220 aa7.3□□□□□ -1.24
USP39-213ENST00000467885 CC2D2BQ6DHV5 1058 aa7.3□□□□□ -1.24
USP39-213ENST00000467885 RTFDC1Q9BY42 306 aaPredicted RBP7.3□□□□□ -1.24
USP39-213ENST00000467885 FHDC1Q9C0D6 1143 aaPredicted RBP7.3□□□□□ -1.24
USP39-213ENST00000467885 PPP1R1BQ9UD71 204 aaPredicted RBP7.3□□□□□ -1.24
USP39-213ENST00000467885 NRXN2Q9P2S2 1712 aa7.3□□□□□ -1.24
USP39-213ENST00000467885 IFIT1P09914 478 aaKnown RBP7.29□□□□□ -1.24
USP39-213ENST00000467885 MX1P20591 662 aa7.29□□□□□ -1.24
USP39-213ENST00000467885 KLRK1P26718 216 aa7.29□□□□□ -1.24
USP39-213ENST00000467885 HIBADHP31937 336 aaKnown RBP7.29□□□□□ -1.24
USP39-213ENST00000467885 PHKA1P46020 1223 aa7.29□□□□□ -1.24
USP39-213ENST00000467885 GYG1P46976 350 aa7.29□□□□□ -1.24
USP39-213ENST00000467885 SCARF1Q14162 830 aa7.29□□□□□ -1.24
USP39-213ENST00000467885 DALRD3Q5D0E6 543 aaKnown RBP7.29□□□□□ -1.24
USP39-213ENST00000467885 TSHZ3Q63HK5 1081 aa7.29□□□□□ -1.24
USP39-213ENST00000467885 CCDC102BQ68D86 513 aa7.29□□□□□ -1.24
USP39-213ENST00000467885 TDRD7Q8NHU6 1098 aaKnown RBP7.29□□□□□ -1.24
USP39-213ENST00000467885 RNF25Q96BH1 459 aaPredicted RBP7.29□□□□□ -1.24
USP39-213ENST00000467885 ANKIB1Q9P2G1 1089 aa7.29□□□□□ -1.24
USP39-213ENST00000467885 COL24A1Q17RW2 1714 aa7.29□□□□□ -1.24
USP39-213ENST00000467885 QSER1Q2KHR3 1735 aa7.29□□□□□ -1.24
USP39-213ENST00000467885 XDHP47989 1333 aa7.28□□□□□ -1.24
USP39-213ENST00000467885 TTC41PQ6P2S7 1318 aa7.28□□□□□ -1.24
USP39-213ENST00000467885 ANKRD36CQ5JPF3 1778 aa7.28□□□□□ -1.24
USP39-213ENST00000467885 N4BP2Q86UW6 1770 aaPredicted RBP7.28□□□□□ -1.24
USP39-213ENST00000467885 DDX60Q8IY21 1712 aaKnown RBP7.28□□□□□ -1.24
USP39-213ENST00000467885 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP7.28□□□□□ -1.24
USP39-213ENST00000467885 C6orf229H3BNL8 230 aa7.28□□□□□ -1.24
USP39-213ENST00000467885 RIOK3O14730 519 aaKnown RBP7.28□□□□□ -1.24
USP39-213ENST00000467885 SLC5A1P13866 664 aa7.28□□□□□ -1.24
USP39-213ENST00000467885 GSPT1P15170 499 aaKnown RBP7.28□□□□□ -1.24
USP39-213ENST00000467885 SDSP20132 328 aa7.28□□□□□ -1.24
USP39-213ENST00000467885 GRIPAP1Q4V328 841 aa7.28□□□□□ -1.24
USP39-213ENST00000467885 CCDC158Q5M9N0 1113 aa7.28□□□□□ -1.24
USP39-213ENST00000467885 TTC22Q5TAA0 569 aa7.28□□□□□ -1.24
USP39-213ENST00000467885 RTKN2Q8IZC4 609 aa7.28□□□□□ -1.24
USP39-213ENST00000467885 PPIL4Q8WUA2 492 aaKnown RBP eCLIP7.28□□□□□ -1.24
USP39-213ENST00000467885 ZFP91Q96JP5 570 aaPredicted RBP7.28□□□□□ -1.24
USP39-213ENST00000467885 GPR101Q96P66 508 aaPredicted RBP7.28□□□□□ -1.24
USP39-213ENST00000467885 HAUS7Q99871 368 aa7.28□□□□□ -1.24
USP39-213ENST00000467885 BOLA2Q9H3K6 86 aa7.28□□□□□ -1.24
USP39-213ENST00000467885 GGA1Q9UJY5 639 aa7.28□□□□□ -1.24
USP39-213ENST00000467885 CASZ1Q86V15 1759 aa7.28□□□□□ -1.24
USP39-213ENST00000467885 AFDNP55196 1824 aaKnown RBP7.27□□□□□ -1.25
USP39-213ENST00000467885 GLRX3O76003 335 aaKnown RBP7.27□□□□□ -1.25
USP39-213ENST00000467885 IL1R1P14778 569 aa7.27□□□□□ -1.25
USP39-213ENST00000467885 ARID4AP29374 1257 aaPredicted RBP7.27□□□□□ -1.25
USP39-213ENST00000467885 PRELPP51888 382 aa7.27□□□□□ -1.25
USP39-213ENST00000467885 WASHC4Q2M389 1173 aa7.27□□□□□ -1.25
USP39-213ENST00000467885 BMP2KLQ5H9B9 411 aa7.27□□□□□ -1.25
USP39-213ENST00000467885 GORABQ5T7V8 394 aa7.27□□□□□ -1.25
USP39-213ENST00000467885 DPP8Q6V1X1 898 aaPredicted RBP7.27□□□□□ -1.25
USP39-213ENST00000467885 EDC3Q96F86 508 aaKnown RBP7.27□□□□□ -1.25
USP39-213ENST00000467885 ZC3H12CQ9C0D7 883 aaKnown RBP7.27□□□□□ -1.25
USP39-213ENST00000467885 TMX4Q9H1E5 349 aaPredicted RBP7.27□□□□□ -1.25
USP39-213ENST00000467885 ANTXR1Q9H6X2 564 aa7.27□□□□□ -1.25
USP39-213ENST00000467885 CD209Q9NNX6 404 aa7.27□□□□□ -1.25
USP39-213ENST00000467885 KCNQ5Q9NR82 932 aa7.27□□□□□ -1.25
USP39-213ENST00000467885 SNRKQ9NRH2 765 aa7.27□□□□□ -1.25
USP39-213ENST00000467885 HMG20BQ9P0W2 317 aa7.27□□□□□ -1.25
USP39-213ENST00000467885 AOX1Q06278 1338 aa7.27□□□□□ -1.25
USP39-213ENST00000467885 ERC2O15083 957 aa7.26□□□□□ -1.25
USP39-213ENST00000467885 UFL1O94874 794 aa7.26□□□□□ -1.25
USP39-213ENST00000467885 MAP4K4O95819 1239 aaPredicted RBP7.26□□□□□ -1.25
USP39-213ENST00000467885 CYP2E1P05181 493 aaPredicted RBP7.26□□□□□ -1.25
USP39-213ENST00000467885 UQCRFS1P1P0C7P4 283 aa7.26□□□□□ -1.25
USP39-213ENST00000467885 MCAMP43121 646 aa7.26□□□□□ -1.25
USP39-213ENST00000467885 ZAP70P43403 619 aa7.26□□□□□ -1.25
USP39-213ENST00000467885 CAVIN4Q5BKX8 364 aa7.26□□□□□ -1.25
USP39-213ENST00000467885 PI16Q6UXB8 463 aa7.26□□□□□ -1.25
USP39-213ENST00000467885 PSMD1Q99460 953 aa7.26□□□□□ -1.25
USP39-213ENST00000467885 VPS33BQ9H267 617 aa7.26□□□□□ -1.25
USP39-213ENST00000467885 WWC3Q9ULE0 1092 aa7.26□□□□□ -1.25
USP39-213ENST00000467885 BCS1LQ9Y276 419 aa7.26□□□□□ -1.25
USP39-213ENST00000467885 NDUFB9Q9Y6M9 179 aa7.26□□□□□ -1.25
USP39-213ENST00000467885 SNED1Q8TER0 1413 aa7.26□□□□□ -1.25
USP39-213ENST00000467885 NFKBIEO00221 500 aa7.25□□□□□ -1.25
USP39-213ENST00000467885 KCNJ4P48050 445 aa7.25□□□□□ -1.25
USP39-213ENST00000467885 FKBP4Q02790 459 aaKnown RBP eCLIP7.25□□□□□ -1.25
USP39-213ENST00000467885 KIAA2012Q0VF49 1180 aa7.25□□□□□ -1.25
USP39-213ENST00000467885 RASGRF1Q13972 1273 aa7.25□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms