RNA–Protein interactions for RNA: ENST00000467819.5

COL9A3-207, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL9A3, Length 993 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-207ENST00000467819 REM2Q8IYK8 340 aaPredicted RBP26.66■■□□□ 1.86
COL9A3-207ENST00000467819 JAG2Q9Y219 1238 aa26.66■■□□□ 1.86
COL9A3-207ENST00000467819 F8W031 263 aaPredicted RBP26.65■■□□□ 1.86
COL9A3-207ENST00000467819 IL1R1P14778 569 aa26.65■■□□□ 1.86
COL9A3-207ENST00000467819 SUCLG2Q96I99 432 aa26.64■■□□□ 1.86
COL9A3-207ENST00000467819 PCDHAC2Q9Y5I4 1007 aa26.64■■□□□ 1.86
COL9A3-207ENST00000467819 ZNF521Q96K83 1311 aa26.64■■□□□ 1.85
COL9A3-207ENST00000467819 MKRN3Q13064 507 aaKnown RBP26.63■■□□□ 1.85
COL9A3-207ENST00000467819 ARMC9Q7Z3E5 817 aa26.63■■□□□ 1.85
COL9A3-207ENST00000467819 COL1A1P02452 1464 aaPredicted RBP26.62■■□□□ 1.85
COL9A3-207ENST00000467819 ARAP2Q8WZ64 1704 aa26.62■■□□□ 1.85
COL9A3-207ENST00000467819 PTPN12Q05209 780 aaKnown RBP26.61■■□□□ 1.85
COL9A3-207ENST00000467819 CFAP100Q494V2 611 aa26.61■■□□□ 1.85
COL9A3-207ENST00000467819 KAZALD1Q96I82 304 aa26.61■■□□□ 1.85
COL9A3-207ENST00000467819 DEFB129Q9H1M3 183 aa26.61■■□□□ 1.85
COL9A3-207ENST00000467819 NBPF7P0C2Y1 421 aaPredicted RBP26.6■■□□□ 1.85
COL9A3-207ENST00000467819 MLLT1Q03111 559 aaPredicted RBP26.6■■□□□ 1.85
COL9A3-207ENST00000467819 MTMR14Q8NCE2 650 aa26.6■■□□□ 1.85
COL9A3-207ENST00000467819 PUS3Q9BZE2 481 aaKnown RBP26.6■■□□□ 1.85
COL9A3-207ENST00000467819 ANGEL1Q9UNK9 670 aaKnown RBP26.6■■□□□ 1.85
COL9A3-207ENST00000467819 FZD1Q9UP38 647 aa26.6■■□□□ 1.85
COL9A3-207ENST00000467819 CLRN2A0PK11 232 aa26.59■■□□□ 1.85
COL9A3-207ENST00000467819 FKBP1AP62942 108 aaKnown RBP26.59■■□□□ 1.85
COL9A3-207ENST00000467819 MYO1BO43795 1136 aa26.58■■□□□ 1.85
COL9A3-207ENST00000467819 TBC1D8O95759 1140 aa26.58■■□□□ 1.85
COL9A3-207ENST00000467819 RGS19P49795 217 aa26.58■■□□□ 1.85
COL9A3-207ENST00000467819 MRPL50Q8N5N7 158 aaKnown RBP26.58■■□□□ 1.85
COL9A3-207ENST00000467819 ZBTB4Q9P1Z0 1013 aaPredicted RBP26.58■■□□□ 1.85
COL9A3-207ENST00000467819 SPDYE2BA6NHP3 402 aa26.57■■□□□ 1.84
COL9A3-207ENST00000467819 SPDYE6P0CI01 402 aa26.57■■□□□ 1.84
COL9A3-207ENST00000467819 GYG1P46976 350 aa26.57■■□□□ 1.84
COL9A3-207ENST00000467819 RBM5P52756 815 aaKnown RBP eCLIP26.57■■□□□ 1.841e-6■■■■□ 23.8
COL9A3-207ENST00000467819 UBE4AQ14139 1066 aa26.57■■□□□ 1.84
COL9A3-207ENST00000467819 PRMT6Q96LA8 375 aaPredicted RBP26.57■■□□□ 1.84
COL9A3-207ENST00000467819 BICC1Q9H694 974 aaKnown RBP26.57■■□□□ 1.84
COL9A3-207ENST00000467819 VEZTQ9HBM0 779 aa26.57■■□□□ 1.84
COL9A3-207ENST00000467819 SSC5DA1L4H1 1573 aa26.57■■□□□ 1.84
COL9A3-207ENST00000467819 CTU1Q7Z7A3 348 aaKnown RBP26.56■■□□□ 1.84
COL9A3-207ENST00000467819 UTYO14607 1347 aa26.56■■□□□ 1.84
COL9A3-207ENST00000467819 AOX1Q06278 1338 aa26.56■■□□□ 1.84
COL9A3-207ENST00000467819 FAM205AQ6ZU69 1335 aa26.56■■□□□ 1.84
COL9A3-207ENST00000467819 HIBADHP31937 336 aaKnown RBP26.55■■□□□ 1.84
COL9A3-207ENST00000467819 TM4SF4P48230 202 aa26.55■■□□□ 1.84
COL9A3-207ENST00000467819 LDLRAD1Q5T700 205 aa26.55■■□□□ 1.84
COL9A3-207ENST00000467819 TDRD7Q8NHU6 1098 aaKnown RBP26.55■■□□□ 1.84
COL9A3-207ENST00000467819 PPP2R3BQ9Y5P8 575 aa26.55■■□□□ 1.84
COL9A3-207ENST00000467819 SREBF2Q12772 1141 aa26.54■■□□□ 1.84
COL9A3-207ENST00000467819 MFSD14BQ5SR56 506 aa26.54■■□□□ 1.84
COL9A3-207ENST00000467819 FAM84BQ96KN1 310 aaPredicted RBP26.54■■□□□ 1.84
COL9A3-207ENST00000467819 RIPOR2Q9Y4F9 1068 aa26.54■■□□□ 1.84
COL9A3-207ENST00000467819 E9PSI1 815 aa26.53■■□□□ 1.84
COL9A3-207ENST00000467819 SPRYD7Q5W111 196 aa26.53■■□□□ 1.84
COL9A3-207ENST00000467819 ZNF296Q8WUU4 475 aaPredicted RBP26.53■■□□□ 1.84
COL9A3-207ENST00000467819 MROH5Q6ZUA9 1318 aa26.53■■□□□ 1.84
COL9A3-207ENST00000467819 LAMB1P07942 1786 aa26.52■■□□□ 1.84
COL9A3-207ENST00000467819 PTPRCP08575 1304 aa26.52■■□□□ 1.84
COL9A3-207ENST00000467819 RABL6Q3YEC7 729 aaPredicted RBP26.52■■□□□ 1.84
COL9A3-207ENST00000467819 ANKRD44Q8N8A2 993 aa26.52■■□□□ 1.84
COL9A3-207ENST00000467819 SSH1Q8WYL5 1049 aa26.52■■□□□ 1.84
COL9A3-207ENST00000467819 OTOFQ9HC10 1997 aa26.52■■□□□ 1.84
COL9A3-207ENST00000467819 TTF2Q9UNY4 1162 aaKnown RBP26.52■■□□□ 1.84
COL9A3-207ENST00000467819 PPP1R12BO60237 982 aaPredicted RBP26.51■■□□□ 1.83
COL9A3-207ENST00000467819 LRRC24Q50LG9 513 aa26.51■■□□□ 1.83
COL9A3-207ENST00000467819 NBPF12Q5TAG4 269 aaPredicted RBP26.51■■□□□ 1.83
COL9A3-207ENST00000467819 SLC10A4Q96EP9 437 aa26.51■■□□□ 1.83
COL9A3-207ENST00000467819 CLMNQ96JQ2 1002 aa26.51■■□□□ 1.83
COL9A3-207ENST00000467819 MYH13Q9UKX3 1938 aa26.5■■□□□ 1.83
COL9A3-207ENST00000467819 MAP3K11Q16584 847 aa26.5■■□□□ 1.83
COL9A3-207ENST00000467819 SUPT20HL1Q3ZLR7 823 aa26.5■■□□□ 1.83
COL9A3-207ENST00000467819 METTL24Q5JXM2 366 aa26.5■■□□□ 1.83
COL9A3-207ENST00000467819 IQSEC3Q9UPP2 1182 aaPredicted RBP26.5■■□□□ 1.83
COL9A3-207ENST00000467819 SOX10P56693 466 aa26.49■■□□□ 1.83
COL9A3-207ENST00000467819 RASA3Q14644 834 aa26.49■■□□□ 1.83
COL9A3-207ENST00000467819 VPS37DQ86XT2 251 aa26.49■■□□□ 1.83
COL9A3-207ENST00000467819 GPR25O00155 361 aa26.48■■□□□ 1.83
COL9A3-207ENST00000467819 SLFN5Q08AF3 891 aa26.48■■□□□ 1.83
COL9A3-207ENST00000467819 KLHDC4Q8TBB5 520 aa26.48■■□□□ 1.83
COL9A3-207ENST00000467819 SERPINA10Q9UK55 444 aa26.48■■□□□ 1.83
COL9A3-207ENST00000467819 CHAF1AQ13111 956 aaPredicted RBP26.47■■□□□ 1.83
COL9A3-207ENST00000467819 SPDYE2Q495Y8 402 aa26.47■■□□□ 1.83
COL9A3-207ENST00000467819 WNK4Q96J92 1243 aa26.47■■□□□ 1.83
COL9A3-207ENST00000467819 TDRD3Q9H7E2 651 aaKnown RBP26.47■■□□□ 1.83
COL9A3-207ENST00000467819 ZNF70Q9UC06 446 aaPredicted RBP26.47■■□□□ 1.83
COL9A3-207ENST00000467819 TNRC18O15417 2968 aaPredicted RBP26.46■■□□□ 1.83
COL9A3-207ENST00000467819 FBXO33Q7Z6M2 555 aa26.46■■□□□ 1.83
COL9A3-207ENST00000467819 USP44Q9H0E7 712 aa26.46■■□□□ 1.83
COL9A3-207ENST00000467819 R3HDMLQ9H3Y0 253 aa26.46■■□□□ 1.83
COL9A3-207ENST00000467819 MANSC4A6NHS7 340 aaPredicted RBP26.45■■□□□ 1.82
COL9A3-207ENST00000467819 FRAT2O75474 233 aaPredicted RBP26.45■■□□□ 1.82
COL9A3-207ENST00000467819 CRKP46108 304 aa26.45■■□□□ 1.82
COL9A3-207ENST00000467819 IREB2P48200 963 aaKnown RBP26.45■■□□□ 1.82
COL9A3-207ENST00000467819 TNFAIP1Q13829 316 aa26.45■■□□□ 1.82
COL9A3-207ENST00000467819 GRIK5Q16478 980 aa26.45■■□□□ 1.82
COL9A3-207ENST00000467819 CAVIN4Q5BKX8 364 aa26.45■■□□□ 1.82
COL9A3-207ENST00000467819 DZIP1LQ8IYY4 767 aaKnown RBP26.45■■□□□ 1.82
COL9A3-207ENST00000467819 VGLL2Q8N8G2 317 aa26.45■■□□□ 1.82
COL9A3-207ENST00000467819 HPS5Q9UPZ3 1129 aa26.45■■□□□ 1.82
COL9A3-207ENST00000467819 PDE4DIPQ5VU43 2346 aa26.45■■□□□ 1.82
COL9A3-207ENST00000467819 PDE8BO95263 885 aa26.44■■□□□ 1.82
COL9A3-207ENST00000467819 ZBTB48P10074 688 aaPredicted RBP26.44■■□□□ 1.82
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms