RNA–Protein interactions for RNA: ENST00000463684.1

SMC1A-204, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 2

Gene SMC1A, Length 880 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-204ENST00000463684 F8W031 263 aaPredicted RBP18.52■□□□□ 0.56
SMC1A-204ENST00000463684 SP3Q02447 781 aa18.52■□□□□ 0.56
SMC1A-204ENST00000463684 CRHR2Q13324 411 aa18.52■□□□□ 0.56
SMC1A-204ENST00000463684 CFAP100Q494V2 611 aa18.52■□□□□ 0.56
SMC1A-204ENST00000463684 TMEM106CQ9BVX2 250 aa18.52■□□□□ 0.56
SMC1A-204ENST00000463684 VEZTQ9HBM0 779 aa18.52■□□□□ 0.56
SMC1A-204ENST00000463684 CSF1RP07333 972 aa18.51■□□□□ 0.55
SMC1A-204ENST00000463684 EN2P19622 333 aaPredicted RBP18.51■□□□□ 0.55
SMC1A-204ENST00000463684 RBM5P52756 815 aaKnown RBP eCLIP18.51■□□□□ 0.55
SMC1A-204ENST00000463684 GCKRQ14397 625 aa18.51■□□□□ 0.55
SMC1A-204ENST00000463684 ARHGEF6Q15052 776 aa18.51■□□□□ 0.55
SMC1A-204ENST00000463684 NBPF12Q5TAG4 269 aaPredicted RBP18.51■□□□□ 0.55
SMC1A-204ENST00000463684 ZNF804AQ7Z570 1209 aa18.51■□□□□ 0.55
SMC1A-204ENST00000463684 ANKRD13AQ8IZ07 590 aa18.51■□□□□ 0.55
SMC1A-204ENST00000463684 CERS5Q8N5B7 392 aa18.51■□□□□ 0.55
SMC1A-204ENST00000463684 ARMC5Q96C12 935 aa18.51■□□□□ 0.55
SMC1A-204ENST00000463684 MYH16Q9H6N6 1097 aa18.51■□□□□ 0.55
SMC1A-204ENST00000463684 ANKRD18BA2A2Z9 1011 aa18.5■□□□□ 0.55
SMC1A-204ENST00000463684 SPDYE2BA6NHP3 402 aa18.5■□□□□ 0.55
SMC1A-204ENST00000463684 USP2O75604 605 aaPredicted RBP18.5■□□□□ 0.55
SMC1A-204ENST00000463684 SPDYE6P0CI01 402 aa18.5■□□□□ 0.55
SMC1A-204ENST00000463684 PRMT6Q96LA8 375 aaPredicted RBP18.5■□□□□ 0.55
SMC1A-204ENST00000463684 PCDHAC2Q9Y5I4 1007 aa18.5■□□□□ 0.55
SMC1A-204ENST00000463684 TAF5LO75529 589 aa18.49■□□□□ 0.55
SMC1A-204ENST00000463684 SLC4A2P04920 1241 aa18.49■□□□□ 0.55
SMC1A-204ENST00000463684 FKBP1AP62942 108 aaKnown RBP18.49■□□□□ 0.55
SMC1A-204ENST00000463684 C15orf52Q6ZUT6 534 aaKnown RBP18.49■□□□□ 0.55
SMC1A-204ENST00000463684 NBPF11Q86T75 865 aa18.49■□□□□ 0.55
SMC1A-204ENST00000463684 MKI67P46013 3256 aaKnown RBP18.48■□□□□ 0.55
SMC1A-204ENST00000463684 SSC5DA1L4H1 1573 aa18.48■□□□□ 0.55
SMC1A-204ENST00000463684 TESPA1A2RU30 521 aaPredicted RBP18.48■□□□□ 0.55
SMC1A-204ENST00000463684 SNAP23O00161 211 aa18.48■□□□□ 0.55
SMC1A-204ENST00000463684 IL1R1P14778 569 aa18.48■□□□□ 0.55
SMC1A-204ENST00000463684 GJA5P36382 358 aa18.48■□□□□ 0.55
SMC1A-204ENST00000463684 RASA3Q14644 834 aa18.48■□□□□ 0.55
SMC1A-204ENST00000463684 G2E3Q7L622 706 aa18.48■□□□□ 0.55
SMC1A-204ENST00000463684 HELBQ8NG08 1087 aaPredicted RBP18.48■□□□□ 0.55
SMC1A-204ENST00000463684 PTPN18Q99952 460 aa18.48■□□□□ 0.55
SMC1A-204ENST00000463684 ZNF646O15015 1829 aaPredicted RBP18.48■□□□□ 0.55
SMC1A-204ENST00000463684 HTTP42858 3142 aa18.48■□□□□ 0.55
SMC1A-204ENST00000463684 SPEF2Q9C093 1822 aa18.47■□□□□ 0.55
SMC1A-204ENST00000463684 TNFAIP1Q13829 316 aa18.47■□□□□ 0.55
SMC1A-204ENST00000463684 ELP3Q9H9T3 547 aa18.47■□□□□ 0.55
SMC1A-204ENST00000463684 CASP7P55210 303 aa18.46■□□□□ 0.55
SMC1A-204ENST00000463684 IFIT5Q13325 482 aaKnown RBP18.46■□□□□ 0.55
SMC1A-204ENST00000463684 TWISTNBQ3B726 338 aaPredicted RBP18.46■□□□□ 0.55
SMC1A-204ENST00000463684 SLC9C1Q4G0N8 1177 aa18.46■□□□□ 0.55
SMC1A-204ENST00000463684 TSR2Q969E8 191 aaKnown RBP18.46■□□□□ 0.55
SMC1A-204ENST00000463684 OPTNQ96CV9 577 aa18.46■□□□□ 0.55
SMC1A-204ENST00000463684 FXR1P51114 621 aaKnown RBP eCLIP18.45■□□□□ 0.54
SMC1A-204ENST00000463684 SLC4A8Q2Y0W8 1093 aa18.45■□□□□ 0.54
SMC1A-204ENST00000463684 LINS1Q8NG48 757 aa18.45■□□□□ 0.54
SMC1A-204ENST00000463684 ZNF333Q96JL9 665 aa18.45■□□□□ 0.54
SMC1A-204ENST00000463684 ZFYVE28Q9HCC9 887 aa18.45■□□□□ 0.54
SMC1A-204ENST00000463684 JAG2Q9Y219 1238 aa18.45■□□□□ 0.54
SMC1A-204ENST00000463684 CHMP3Q9Y3E7 222 aa18.45■□□□□ 0.54
SMC1A-204ENST00000463684 IRS2Q9Y4H2 1338 aa18.45■□□□□ 0.54
SMC1A-204ENST00000463684 MYH3P11055 1940 aa18.45■□□□□ 0.54
SMC1A-204ENST00000463684 GTF2A2P52657 109 aa18.44■□□□□ 0.54
SMC1A-204ENST00000463684 FLIIQ13045 1269 aa18.44■□□□□ 0.54
SMC1A-204ENST00000463684 FKBP5Q13451 457 aaPredicted RBP18.44■□□□□ 0.54
SMC1A-204ENST00000463684 TAF1CQ15572 869 aaPredicted RBP18.44■□□□□ 0.54
SMC1A-204ENST00000463684 DNAAF4Q8WXU2 420 aa18.44■□□□□ 0.54
SMC1A-204ENST00000463684 MS4A4AQ96JQ5 239 aa18.44■□□□□ 0.54
SMC1A-204ENST00000463684 CENPFP49454 3210 aa18.44■□□□□ 0.54
SMC1A-204ENST00000463684 PLIN1O60240 522 aa18.43■□□□□ 0.54
SMC1A-204ENST00000463684 WDHD1O75717 1129 aaPredicted RBP18.43■□□□□ 0.54
SMC1A-204ENST00000463684 ZNF70Q9UC06 446 aaPredicted RBP18.43■□□□□ 0.54
SMC1A-204ENST00000463684 CCL15-CCL14A0A0B4J2E2 113 aa18.42■□□□□ 0.54
SMC1A-204ENST00000463684 CCL15Q16663 113 aa18.42■□□□□ 0.54
SMC1A-204ENST00000463684 SPDYE2Q495Y8 402 aa18.42■□□□□ 0.54
SMC1A-204ENST00000463684 TAF7LQ5H9L4 462 aa18.42■□□□□ 0.54
SMC1A-204ENST00000463684 TDRD3Q9H7E2 651 aaKnown RBP18.42■□□□□ 0.54
SMC1A-204ENST00000463684 PRKRIP1Q9H875 184 aaPredicted RBP18.42■□□□□ 0.54
SMC1A-204ENST00000463684 SERPINA10Q9UK55 444 aa18.42■□□□□ 0.54
SMC1A-204ENST00000463684 COLQQ9Y215 455 aaPredicted RBP18.42■□□□□ 0.54
SMC1A-204ENST00000463684 PTCH2Q9Y6C5 1203 aa18.42■□□□□ 0.54
SMC1A-204ENST00000463684 AOX1Q06278 1338 aa18.42■□□□□ 0.54
SMC1A-204ENST00000463684 TNNI2P48788 182 aa18.41■□□□□ 0.54
SMC1A-204ENST00000463684 MAP3K9P80192 1104 aa18.41■□□□□ 0.54
SMC1A-204ENST00000463684 FOXO4P98177 505 aa18.41■□□□□ 0.54
SMC1A-204ENST00000463684 CAP1Q01518 475 aa18.41■□□□□ 0.54
SMC1A-204ENST00000463684 KIF22Q14807 665 aa18.41■□□□□ 0.54
SMC1A-204ENST00000463684 CCDC57Q2TAC2 916 aa18.41■□□□□ 0.54
SMC1A-204ENST00000463684 LDHAL6AQ6ZMR3 332 aa18.41■□□□□ 0.54
SMC1A-204ENST00000463684 PPP1R3FQ6ZSY5 799 aaPredicted RBP18.41■□□□□ 0.54
SMC1A-204ENST00000463684 BRI3BPQ8WY22 251 aa18.41■□□□□ 0.54
SMC1A-204ENST00000463684 TTF2Q9UNY4 1162 aaKnown RBP18.41■□□□□ 0.54
SMC1A-204ENST00000463684 CSADQ9Y600 493 aa18.41■□□□□ 0.54
SMC1A-204ENST00000463684 MFSD14BQ5SR56 506 aa18.4■□□□□ 0.54
SMC1A-204ENST00000463684 CNNM1Q9NRU3 951 aa18.4■□□□□ 0.54
SMC1A-204ENST00000463684 TCP10L2B9ZVM9 353 aa18.39■□□□□ 0.53
SMC1A-204ENST00000463684 MYCP01106 439 aaPredicted RBP18.39■□□□□ 0.53
SMC1A-204ENST00000463684 VGLL4Q14135 290 aa18.39■□□□□ 0.53
SMC1A-204ENST00000463684 LMBR1LQ6UX01 489 aa18.39■□□□□ 0.53
SMC1A-204ENST00000463684 DZIP1LQ8IYY4 767 aaKnown RBP18.39■□□□□ 0.53
SMC1A-204ENST00000463684 CNKSR2Q8WXI2 1034 aa18.39■□□□□ 0.53
SMC1A-204ENST00000463684 OTUD5Q96G74 571 aa18.39■□□□□ 0.53
SMC1A-204ENST00000463684 FAM205AQ6ZU69 1335 aa18.39■□□□□ 0.53
SMC1A-204ENST00000463684 RBBP6Q7Z6E9 1792 aaKnown RBP18.38■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms