RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 SLC4A10Q6U841 1118 aa20.41■□□□□ 0.86
COL7A1-204ENST00000462475 LDHAL6AQ6ZMR3 332 aa20.41■□□□□ 0.86
COL7A1-204ENST00000462475 PLIN1O60240 522 aa20.4■□□□□ 0.86
COL7A1-204ENST00000462475 ALDH1L1O75891 902 aa20.4■□□□□ 0.86
COL7A1-204ENST00000462475 COL1A1P02452 1464 aaPredicted RBP20.4■□□□□ 0.86
COL7A1-204ENST00000462475 PTPN12Q05209 780 aaKnown RBP20.4■□□□□ 0.86
COL7A1-204ENST00000462475 CNNM1Q9NRU3 951 aa20.4■□□□□ 0.86
COL7A1-204ENST00000462475 C9orf78Q9NZ63 289 aaPredicted RBP20.4■□□□□ 0.86
COL7A1-204ENST00000462475 FZD1Q9UP38 647 aa20.4■□□□□ 0.86
COL7A1-204ENST00000462475 SSC5DA1L4H1 1573 aa20.39■□□□□ 0.85
COL7A1-204ENST00000462475 AOX1Q06278 1338 aa20.39■□□□□ 0.85
COL7A1-204ENST00000462475 ARMC9Q7Z3E5 817 aa20.39■□□□□ 0.85
COL7A1-204ENST00000462475 CTU1Q7Z7A3 348 aaKnown RBP20.39■□□□□ 0.85
COL7A1-204ENST00000462475 MTMR14Q8NCE2 650 aa20.39■□□□□ 0.85
COL7A1-204ENST00000462475 SUCLG2Q96I99 432 aa20.39■□□□□ 0.85
COL7A1-204ENST00000462475 SRCIN1Q9C0H9 1055 aa20.39■□□□□ 0.85
COL7A1-204ENST00000462475 DEFB129Q9H1M3 183 aa20.39■□□□□ 0.85
COL7A1-204ENST00000462475 ZNF521Q96K83 1311 aa20.38■□□□□ 0.85
COL7A1-204ENST00000462475 TBC1D8O95759 1140 aa20.38■□□□□ 0.85
COL7A1-204ENST00000462475 CFAP100Q494V2 611 aa20.38■□□□□ 0.85
COL7A1-204ENST00000462475 LDLRAD1Q5T700 205 aa20.38■□□□□ 0.85
COL7A1-204ENST00000462475 KAZALD1Q96I82 304 aa20.38■□□□□ 0.85
COL7A1-204ENST00000462475 ANGEL1Q9UNK9 670 aaKnown RBP20.38■□□□□ 0.85
COL7A1-204ENST00000462475 CLRN2A0PK11 232 aa20.37■□□□□ 0.85
COL7A1-204ENST00000462475 SPDYE2BA6NHP3 402 aa20.37■□□□□ 0.85
COL7A1-204ENST00000462475 SPDYE6P0CI01 402 aa20.37■□□□□ 0.85
COL7A1-204ENST00000462475 TM4SF4P48230 202 aa20.37■□□□□ 0.85
COL7A1-204ENST00000462475 FKBP1AP62942 108 aaKnown RBP20.37■□□□□ 0.85
COL7A1-204ENST00000462475 NBPF7P0C2Y1 421 aaPredicted RBP20.36■□□□□ 0.85
COL7A1-204ENST00000462475 ZNF296Q8WUU4 475 aaPredicted RBP20.36■□□□□ 0.85
COL7A1-204ENST00000462475 PRMT6Q96LA8 375 aaPredicted RBP20.36■□□□□ 0.85
COL7A1-204ENST00000462475 PUS3Q9BZE2 481 aaKnown RBP20.36■□□□□ 0.85
COL7A1-204ENST00000462475 SOX10P56693 466 aa20.35■□□□□ 0.85
COL7A1-204ENST00000462475 SPRYD7Q5W111 196 aa20.35■□□□□ 0.85
COL7A1-204ENST00000462475 VEZTQ9HBM0 779 aa20.35■□□□□ 0.85
COL7A1-204ENST00000462475 FAM205AQ6ZU69 1335 aa20.34■□□□□ 0.85
COL7A1-204ENST00000462475 GYG1P46976 350 aa20.34■□□□□ 0.85
COL7A1-204ENST00000462475 SREBF2Q12772 1141 aa20.34■□□□□ 0.85
COL7A1-204ENST00000462475 UBE4AQ14139 1066 aa20.34■□□□□ 0.85
COL7A1-204ENST00000462475 PPP2R3BQ9Y5P8 575 aa20.34■□□□□ 0.85
COL7A1-204ENST00000462475 TNRC18O15417 2968 aaPredicted RBP20.34■□□□□ 0.85
COL7A1-204ENST00000462475 UTYO14607 1347 aa20.33■□□□□ 0.85
COL7A1-204ENST00000462475 MYO1BO43795 1136 aa20.33■□□□□ 0.85
COL7A1-204ENST00000462475 MAP3K11Q16584 847 aa20.33■□□□□ 0.85
COL7A1-204ENST00000462475 MRPL50Q8N5N7 158 aaKnown RBP20.33■□□□□ 0.85
COL7A1-204ENST00000462475 TDRD7Q8NHU6 1098 aaKnown RBP20.33■□□□□ 0.85
COL7A1-204ENST00000462475 CLMNQ96JQ2 1002 aa20.33■□□□□ 0.85
COL7A1-204ENST00000462475 BICC1Q9H694 974 aaKnown RBP20.33■□□□□ 0.85
COL7A1-204ENST00000462475 ZBTB4Q9P1Z0 1013 aaPredicted RBP20.33■□□□□ 0.85
COL7A1-204ENST00000462475 ECM29Q5VYK3 1845 aa20.32■□□□□ 0.84
COL7A1-204ENST00000462475 GPR25O00155 361 aa20.32■□□□□ 0.84
COL7A1-204ENST00000462475 HIBADHP31937 336 aaKnown RBP20.32■□□□□ 0.84
COL7A1-204ENST00000462475 RBM5P52756 815 aaKnown RBP eCLIP20.32■□□□□ 0.84
COL7A1-204ENST00000462475 MFSD14BQ5SR56 506 aa20.32■□□□□ 0.84
COL7A1-204ENST00000462475 FAM84BQ96KN1 310 aaPredicted RBP20.32■□□□□ 0.84
COL7A1-204ENST00000462475 R3HDMLQ9H3Y0 253 aa20.32■□□□□ 0.84
COL7A1-204ENST00000462475 RABL6Q3YEC7 729 aaPredicted RBP20.31■□□□□ 0.84
COL7A1-204ENST00000462475 NBPF12Q5TAG4 269 aaPredicted RBP20.31■□□□□ 0.84
COL7A1-204ENST00000462475 ANKRD44Q8N8A2 993 aa20.31■□□□□ 0.84
COL7A1-204ENST00000462475 HPS5Q9UPZ3 1129 aa20.31■□□□□ 0.84
COL7A1-204ENST00000462475 RIPOR2Q9Y4F9 1068 aa20.31■□□□□ 0.84
COL7A1-204ENST00000462475 PPP1R12BO60237 982 aaPredicted RBP20.3■□□□□ 0.84
COL7A1-204ENST00000462475 RASA3Q14644 834 aa20.3■□□□□ 0.84
COL7A1-204ENST00000462475 NOM1Q5C9Z4 860 aaKnown RBP20.3■□□□□ 0.84
COL7A1-204ENST00000462475 SLC10A4Q96EP9 437 aa20.3■□□□□ 0.84
COL7A1-204ENST00000462475 CFHR5Q9BXR6 569 aa20.3■□□□□ 0.84
COL7A1-204ENST00000462475 TTF2Q9UNY4 1162 aaKnown RBP20.3■□□□□ 0.84
COL7A1-204ENST00000462475 MROH5Q6ZUA9 1318 aa20.29■□□□□ 0.84
COL7A1-204ENST00000462475 SUPT20HL1Q3ZLR7 823 aa20.29■□□□□ 0.84
COL7A1-204ENST00000462475 SPDYE2Q495Y8 402 aa20.29■□□□□ 0.84
COL7A1-204ENST00000462475 LRRC24Q50LG9 513 aa20.29■□□□□ 0.84
COL7A1-204ENST00000462475 WNK4Q96J92 1243 aa20.29■□□□□ 0.84
COL7A1-204ENST00000462475 ARAP2Q8WZ64 1704 aa20.28■□□□□ 0.84
COL7A1-204ENST00000462475 MANSC4A6NHS7 340 aaPredicted RBP20.28■□□□□ 0.84
COL7A1-204ENST00000462475 GRIK5Q16478 980 aa20.28■□□□□ 0.84
COL7A1-204ENST00000462475 PKN2Q16513 984 aaKnown RBP20.28■□□□□ 0.84
COL7A1-204ENST00000462475 ZNF70Q9UC06 446 aaPredicted RBP20.28■□□□□ 0.84
COL7A1-204ENST00000462475 SERPINA10Q9UK55 444 aa20.28■□□□□ 0.84
COL7A1-204ENST00000462475 IQSEC3Q9UPP2 1182 aaPredicted RBP20.28■□□□□ 0.84
COL7A1-204ENST00000462475 PTPRCP08575 1304 aa20.27■□□□□ 0.84
COL7A1-204ENST00000462475 FKTNO75072 461 aa20.27■□□□□ 0.84
COL7A1-204ENST00000462475 USP2O75604 605 aaPredicted RBP20.27■□□□□ 0.84
COL7A1-204ENST00000462475 ZBTB48P10074 688 aaPredicted RBP20.27■□□□□ 0.84
COL7A1-204ENST00000462475 METTL24Q5JXM2 366 aa20.27■□□□□ 0.84
COL7A1-204ENST00000462475 FBXO33Q7Z6M2 555 aa20.27■□□□□ 0.84
COL7A1-204ENST00000462475 CDAN1Q8IWY9 1227 aa20.27■□□□□ 0.84
COL7A1-204ENST00000462475 KLHDC4Q8TBB5 520 aa20.27■□□□□ 0.84
COL7A1-204ENST00000462475 SSH1Q8WYL5 1049 aa20.27■□□□□ 0.84
COL7A1-204ENST00000462475 TDRD3Q9H7E2 651 aaKnown RBP20.27■□□□□ 0.84
COL7A1-204ENST00000462475 IGF2BP3O00425 579 aaKnown RBP eCLIP20.26■□□□□ 0.83
COL7A1-204ENST00000462475 ALDH1A1P00352 501 aa20.26■□□□□ 0.83
COL7A1-204ENST00000462475 GJA5P36382 358 aa20.26■□□□□ 0.83
COL7A1-204ENST00000462475 IREB2P48200 963 aaKnown RBP20.26■□□□□ 0.83
COL7A1-204ENST00000462475 IFNL1Q8IU54 200 aa20.26■□□□□ 0.83
COL7A1-204ENST00000462475 DZIP1LQ8IYY4 767 aaKnown RBP20.26■□□□□ 0.83
COL7A1-204ENST00000462475 VGLL2Q8N8G2 317 aa20.26■□□□□ 0.83
COL7A1-204ENST00000462475 HTTP42858 3142 aa20.25■□□□□ 0.83
COL7A1-204ENST00000462475 UNCXA6NJT0 531 aa20.25■□□□□ 0.83
COL7A1-204ENST00000462475 E9PSI1 815 aa20.25■□□□□ 0.83
COL7A1-204ENST00000462475 CRKP46108 304 aa20.25■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms