RNA–Protein interactions for RNA: ENST00000461872.6

SYNE1-216, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,075 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-216ENST00000461872 PAG1Q9NWQ8 432 aa8.04□□□□□ -1.12
SYNE1-216ENST00000461872 RTEL1Q9NZ71 1219 aa8.04□□□□□ -1.12
SYNE1-216ENST00000461872 AXDND1Q5T1B0 1012 aaPredicted RBP8.04□□□□□ -1.12
SYNE1-216ENST00000461872 IQCA1Q86XH1 822 aa8.04□□□□□ -1.12
SYNE1-216ENST00000461872 NECTIN2Q92692 538 aa8.04□□□□□ -1.12
SYNE1-216ENST00000461872 BOLA2Q9H3K6 86 aa8.04□□□□□ -1.12
SYNE1-216ENST00000461872 CPS1P31327 1500 aa8.03□□□□□ -1.12
SYNE1-216ENST00000461872 NAPBQ9H115 298 aa8.03□□□□□ -1.12
SYNE1-216ENST00000461872 TMX4Q9H1E5 349 aaPredicted RBP8.03□□□□□ -1.12
SYNE1-216ENST00000461872 NLRP12P59046 1061 aa8.03□□□□□ -1.12
SYNE1-216ENST00000461872 PTPDC1A2A3K4 754 aa8.03□□□□□ -1.12
SYNE1-216ENST00000461872 B4GALNT4Q76KP1 1039 aa8.03□□□□□ -1.12
SYNE1-216ENST00000461872 NUCKS1Q9H1E3 243 aaKnown RBP8.03□□□□□ -1.12
SYNE1-216ENST00000461872 CHPF2Q9P2E5 772 aa8.03□□□□□ -1.12
SYNE1-216ENST00000461872 RCOR1Q9UKL0 485 aa8.03□□□□□ -1.12
SYNE1-216ENST00000461872 CMA1P23946 247 aa8.03□□□□□ -1.12
SYNE1-216ENST00000461872 RBM28Q9NW13 759 aaKnown RBP8.03□□□□□ -1.12
SYNE1-216ENST00000461872 WHAMMP3Q1A5X7 153 aa8.03□□□□□ -1.12
SYNE1-216ENST00000461872 VPS37DQ86XT2 251 aa8.03□□□□□ -1.12
SYNE1-216ENST00000461872 METTL22Q9BUU2 404 aaPredicted RBP8.03□□□□□ -1.12
SYNE1-216ENST00000461872 OSBPL5Q9H0X9 879 aaPredicted RBP8.03□□□□□ -1.12
SYNE1-216ENST00000461872 CTIFO43310 598 aaKnown RBP8.03□□□□□ -1.12
SYNE1-216ENST00000461872 PRPHP41219 470 aa8.03□□□□□ -1.12
SYNE1-216ENST00000461872 EYA1Q99502 592 aa8.03□□□□□ -1.12
SYNE1-216ENST00000461872 NUP58Q9BVL2 599 aa8.03□□□□□ -1.12
SYNE1-216ENST00000461872 KIAA1468Q9P260 1216 aa8.03□□□□□ -1.12
SYNE1-216ENST00000461872 USP16Q9Y5T5 823 aa8.03□□□□□ -1.12
SYNE1-216ENST00000461872 MAP3K15Q6ZN16 1313 aa8.03□□□□□ -1.12
SYNE1-216ENST00000461872 NBPF7P0C2Y1 421 aaPredicted RBP8.03□□□□□ -1.12
SYNE1-216ENST00000461872 GBP6Q6ZN66 633 aa8.03□□□□□ -1.12
SYNE1-216ENST00000461872 CCDC102AQ96A19 550 aa8.03□□□□□ -1.12
SYNE1-216ENST00000461872 EXOC4Q96A65 974 aa8.03□□□□□ -1.12
SYNE1-216ENST00000461872 PODXL2Q9NZ53 605 aa8.03□□□□□ -1.12
SYNE1-216ENST00000461872 PPP2R5EQ16537 467 aa8.03□□□□□ -1.12
SYNE1-216ENST00000461872 Q6ZUG5 572 aa8.03□□□□□ -1.12
SYNE1-216ENST00000461872 STMN4Q9H169 189 aaPredicted RBP8.03□□□□□ -1.12
SYNE1-216ENST00000461872 GDPD2Q9HCC8 539 aa8.03□□□□□ -1.12
SYNE1-216ENST00000461872 ZRSR2Q15696 482 aaKnown RBP8.02□□□□□ -1.12
SYNE1-216ENST00000461872 NBPF11Q86T75 865 aa8.02□□□□□ -1.12
SYNE1-216ENST00000461872 LRRC8AQ8IWT6 810 aa8.02□□□□□ -1.12
SYNE1-216ENST00000461872 SIRT2Q8IXJ6 389 aa8.02□□□□□ -1.12
SYNE1-216ENST00000461872 PPM1EQ8WY54 764 aa8.02□□□□□ -1.12
SYNE1-216ENST00000461872 EPS15P42566 896 aa8.02□□□□□ -1.13
SYNE1-216ENST00000461872 AIMP1Q12904 312 aaKnown RBP8.02□□□□□ -1.13
SYNE1-216ENST00000461872 STK3Q13188 491 aa8.02□□□□□ -1.13
SYNE1-216ENST00000461872 PPP1R12BO60237 982 aaPredicted RBP8.02□□□□□ -1.13
SYNE1-216ENST00000461872 CCDC172P0C7W6 258 aa8.02□□□□□ -1.13
SYNE1-216ENST00000461872 HOXC9P31274 260 aa8.02□□□□□ -1.13
SYNE1-216ENST00000461872 CATIPQ7Z7H3 387 aa8.02□□□□□ -1.13
SYNE1-216ENST00000461872 CCDC50Q8IVM0 306 aa8.02□□□□□ -1.13
SYNE1-216ENST00000461872 KNDC1Q76NI1 1749 aa8.02□□□□□ -1.13
SYNE1-216ENST00000461872 SEMA3EO15041 775 aa8.02□□□□□ -1.13
SYNE1-216ENST00000461872 ZBTB43O43298 467 aa8.02□□□□□ -1.13
SYNE1-216ENST00000461872 BAG1Q99933 345 aaPredicted RBP8.02□□□□□ -1.13
SYNE1-216ENST00000461872 SLC5A1P13866 664 aa8.02□□□□□ -1.13
SYNE1-216ENST00000461872 KIAA1328Q86T90 577 aa8.02□□□□□ -1.13
SYNE1-216ENST00000461872 NRKQ7Z2Y5 1582 aa8.02□□□□□ -1.13
SYNE1-216ENST00000461872 ANO1Q5XXA6 986 aa8.02□□□□□ -1.13
SYNE1-216ENST00000461872 KCNB2Q92953 911 aa8.02□□□□□ -1.13
SYNE1-216ENST00000461872 STK24Q9Y6E0 443 aa8.02□□□□□ -1.13
SYNE1-216ENST00000461872 CIAO1O76071 339 aa8.02□□□□□ -1.13
SYNE1-216ENST00000461872 TRAF1Q13077 416 aa8.02□□□□□ -1.13
SYNE1-216ENST00000461872 BEND3Q5T5X7 828 aa8.02□□□□□ -1.13
SYNE1-216ENST00000461872 AOPEPQ8N6M6 819 aa8.02□□□□□ -1.13
SYNE1-216ENST00000461872 IQUBQ8NA54 791 aa8.01□□□□□ -1.13
SYNE1-216ENST00000461872 TAF4BQ92750 862 aa8.01□□□□□ -1.13
SYNE1-216ENST00000461872 CDK5RAP3Q96JB5 506 aa8.01□□□□□ -1.13
SYNE1-216ENST00000461872 ADCY9O60503 1353 aa8.01□□□□□ -1.13
SYNE1-216ENST00000461872 ARHGAP25P42331 645 aa8.01□□□□□ -1.13
SYNE1-216ENST00000461872 PPFIA1Q13136 1202 aa8.01□□□□□ -1.13
SYNE1-216ENST00000461872 ANGEL1Q9UNK9 670 aaKnown RBP8.01□□□□□ -1.13
SYNE1-216ENST00000461872 GOLGA5Q8TBA6 731 aa8.01□□□□□ -1.13
SYNE1-216ENST00000461872 ESR2Q92731 530 aa8.01□□□□□ -1.13
SYNE1-216ENST00000461872 INCENPQ9NQS7 918 aa8.01□□□□□ -1.13
SYNE1-216ENST00000461872 OVOS2A0A0J9YW53 1432 aa8.01□□□□□ -1.13
SYNE1-216ENST00000461872 OVOS2Q6IE36 1432 aa8.01□□□□□ -1.13
SYNE1-216ENST00000461872 TRIM75PA6NK02 468 aa8.01□□□□□ -1.13
SYNE1-216ENST00000461872 CCDC155Q8N6L0 562 aa8.01□□□□□ -1.13
SYNE1-216ENST00000461872 CNNM1Q9NRU3 951 aa8.01□□□□□ -1.13
SYNE1-216ENST00000461872 PSMA7O14818 248 aa8.01□□□□□ -1.13
SYNE1-216ENST00000461872 MARCH6O60337 910 aa8.01□□□□□ -1.13
SYNE1-216ENST00000461872 EIF5P55010 431 aaKnown RBP8.01□□□□□ -1.13
SYNE1-216ENST00000461872 ESCO1Q5FWF5 840 aa8.01□□□□□ -1.13
SYNE1-216ENST00000461872 TTC14Q96N46 770 aa8.01□□□□□ -1.13
SYNE1-216ENST00000461872 TSG101Q99816 390 aa8.01□□□□□ -1.13
SYNE1-216ENST00000461872 AKR1B15C9JRZ8 316 aaPredicted RBP8.01□□□□□ -1.13
SYNE1-216ENST00000461872 SPECC1LQ69YQ0 1117 aa8.01□□□□□ -1.13
SYNE1-216ENST00000461872 KCND1Q9NSA2 647 aa8.01□□□□□ -1.13
SYNE1-216ENST00000461872 DDX41Q9UJV9 622 aaKnown RBP8.01□□□□□ -1.13
SYNE1-216ENST00000461872 GOLGA8AA7E2F4 631 aa8.01□□□□□ -1.13
SYNE1-216ENST00000461872 CDC5LQ99459 802 aaKnown RBP8.01□□□□□ -1.13
SYNE1-216ENST00000461872 NAP1L4Q99733 375 aaKnown RBP8.01□□□□□ -1.13
SYNE1-216ENST00000461872 EBAG9O00559 213 aa8.01□□□□□ -1.13
SYNE1-216ENST00000461872 CEBPZQ03701 1054 aaKnown RBP8.01□□□□□ -1.13
SYNE1-216ENST00000461872 ARMC9Q7Z3E5 817 aa8.01□□□□□ -1.13
SYNE1-216ENST00000461872 CHMP4BP1P59074 171 aa8□□□□□ -1.13
SYNE1-216ENST00000461872 MFSD6Q6ZSS7 791 aa8□□□□□ -1.13
SYNE1-216ENST00000461872 C16orf71Q8IYS4 520 aaPredicted RBP8□□□□□ -1.13
SYNE1-216ENST00000461872 GLT8D2Q9H1C3 349 aa8□□□□□ -1.13
SYNE1-216ENST00000461872 ZNF652Q9Y2D9 606 aa8□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms