RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 KIF16BQ96L93 1317 aa17.5■□□□□ 0.39
USP4-206ENST00000461553 CAPN15O75808 1086 aa17.5■□□□□ 0.39
USP4-206ENST00000461553 NF2P35240 595 aa17.5■□□□□ 0.39
USP4-206ENST00000461553 FKBP1AP62942 108 aaKnown RBP17.5■□□□□ 0.39
USP4-206ENST00000461553 METTL24Q5JXM2 366 aa17.5■□□□□ 0.39
USP4-206ENST00000461553 CCDC102AQ96A19 550 aa17.5■□□□□ 0.39
USP4-206ENST00000461553 USP44Q9H0E7 712 aa17.5■□□□□ 0.39
USP4-206ENST00000461553 SCAF8Q9UPN6 1271 aaKnown RBP17.5■□□□□ 0.39
USP4-206ENST00000461553 F8W031 263 aaPredicted RBP17.49■□□□□ 0.39
USP4-206ENST00000461553 DLGAP5Q15398 846 aa17.49■□□□□ 0.39
USP4-206ENST00000461553 CERS5Q8N5B7 392 aa17.49■□□□□ 0.39
USP4-206ENST00000461553 API5Q9BZZ5 524 aaKnown RBP17.49■□□□□ 0.39
USP4-206ENST00000461553 JAG2Q9Y219 1238 aa17.49■□□□□ 0.39
USP4-206ENST00000461553 RIPOR2Q9Y4F9 1068 aa17.49■□□□□ 0.39
USP4-206ENST00000461553 FAM155AB1AL88 458 aaPredicted RBP17.48■□□□□ 0.39
USP4-206ENST00000461553 SLC10A3P09131 477 aa17.48■□□□□ 0.39
USP4-206ENST00000461553 HIBADHP31937 336 aaKnown RBP17.48■□□□□ 0.39
USP4-206ENST00000461553 GYG1P46976 350 aa17.48■□□□□ 0.39
USP4-206ENST00000461553 VPS37DQ86XT2 251 aa17.48■□□□□ 0.39
USP4-206ENST00000461553 TSKSQ9UJT2 592 aa17.48■□□□□ 0.39
USP4-206ENST00000461553 NOB1Q9ULX3 412 aaKnown RBP17.48■□□□□ 0.39
USP4-206ENST00000461553 MYO1BO43795 1136 aa17.47■□□□□ 0.39
USP4-206ENST00000461553 UBTFL1P0CB47 393 aaPredicted RBP17.47■□□□□ 0.39
USP4-206ENST00000461553 TTLL12Q14166 644 aaPredicted RBP17.47■□□□□ 0.39
USP4-206ENST00000461553 LRRC24Q50LG9 513 aa17.47■□□□□ 0.39
USP4-206ENST00000461553 ZBED3Q96IU2 234 aaPredicted RBP17.47■□□□□ 0.39
USP4-206ENST00000461553 FAM205AQ6ZU69 1335 aa17.47■□□□□ 0.39
USP4-206ENST00000461553 OTOFQ9HC10 1997 aa17.46■□□□□ 0.39
USP4-206ENST00000461553 CFAP100Q494V2 611 aa17.46■□□□□ 0.39
USP4-206ENST00000461553 MFSD14BQ5SR56 506 aa17.46■□□□□ 0.39
USP4-206ENST00000461553 RASAL3Q86YV0 1011 aa17.46■□□□□ 0.39
USP4-206ENST00000461553 MTMR14Q8NCE2 650 aa17.46■□□□□ 0.39
USP4-206ENST00000461553 TDRD7Q8NHU6 1098 aaKnown RBP17.46■□□□□ 0.39
USP4-206ENST00000461553 KLHDC4Q8TBB5 520 aa17.46■□□□□ 0.39
USP4-206ENST00000461553 LAMB1P07942 1786 aa17.45■□□□□ 0.38
USP4-206ENST00000461553 RARSP54136 660 aaKnown RBP17.45■□□□□ 0.38
USP4-206ENST00000461553 CAVIN4Q5BKX8 364 aa17.45■□□□□ 0.38
USP4-206ENST00000461553 PRAMEF18Q5VWM3 479 aa17.45■□□□□ 0.38
USP4-206ENST00000461553 VGLL2Q8N8G2 317 aa17.45■□□□□ 0.38
USP4-206ENST00000461553 FAM84BQ96KN1 310 aaPredicted RBP17.45■□□□□ 0.38
USP4-206ENST00000461553 ZIC5Q96T25 663 aa17.45■□□□□ 0.38
USP4-206ENST00000461553 HDAC5Q9UQL6 1122 aa17.45■□□□□ 0.38
USP4-206ENST00000461553 SPDYE2BA6NHP3 402 aa17.44■□□□□ 0.38
USP4-206ENST00000461553 FRAT2O75474 233 aaPredicted RBP17.44■□□□□ 0.38
USP4-206ENST00000461553 PDE8BO95263 885 aa17.44■□□□□ 0.38
USP4-206ENST00000461553 SPDYE6P0CI01 402 aa17.44■□□□□ 0.38
USP4-206ENST00000461553 RBM5P52756 815 aaKnown RBP eCLIP17.44■□□□□ 0.38
USP4-206ENST00000461553 KIF23Q02241 960 aaPredicted RBP17.44■□□□□ 0.38
USP4-206ENST00000461553 PUM3Q15397 648 aaKnown RBP17.44■□□□□ 0.38
USP4-206ENST00000461553 PPP2R3BQ9Y5P8 575 aa17.44■□□□□ 0.38
USP4-206ENST00000461553 EYA2O00167 538 aa17.43■□□□□ 0.38
USP4-206ENST00000461553 IFIT1P09914 478 aaKnown RBP17.43■□□□□ 0.38
USP4-206ENST00000461553 MOB2Q70IA6 237 aa17.43■□□□□ 0.38
USP4-206ENST00000461553 ARMC9Q7Z3E5 817 aa17.43■□□□□ 0.38
USP4-206ENST00000461553 VEZTQ9HBM0 779 aa17.43■□□□□ 0.38
USP4-206ENST00000461553 SAGE1Q9NXZ1 904 aa17.43■□□□□ 0.38
USP4-206ENST00000461553 TTF2Q9UNY4 1162 aaKnown RBP17.43■□□□□ 0.38
USP4-206ENST00000461553 CLRN2A0PK11 232 aa17.42■□□□□ 0.38
USP4-206ENST00000461553 SLC5A1P13866 664 aa17.42■□□□□ 0.38
USP4-206ENST00000461553 RFX5P48382 616 aaPredicted RBP17.42■□□□□ 0.38
USP4-206ENST00000461553 CHAF1AQ13111 956 aaPredicted RBP17.42■□□□□ 0.38
USP4-206ENST00000461553 DIEXFQ68CQ4 756 aaKnown RBP17.42■□□□□ 0.38
USP4-206ENST00000461553 REM2Q8IYK8 340 aaPredicted RBP17.42■□□□□ 0.38
USP4-206ENST00000461553 IQSEC3Q9UPP2 1182 aaPredicted RBP17.42■□□□□ 0.38
USP4-206ENST00000461553 PCDHAC2Q9Y5I4 1007 aa17.42■□□□□ 0.38
USP4-206ENST00000461553 LRRFIP2Q9Y608 721 aaKnown RBP17.42■□□□□ 0.38
USP4-206ENST00000461553 SSC5DA1L4H1 1573 aa17.41■□□□□ 0.38
USP4-206ENST00000461553 UBE2Q2LH0YL09 131 aa17.41■□□□□ 0.38
USP4-206ENST00000461553 PTPN12Q05209 780 aaKnown RBP17.41■□□□□ 0.38
USP4-206ENST00000461553 FBXO33Q7Z6M2 555 aa17.41■□□□□ 0.38
USP4-206ENST00000461553 TBC1D22AQ8WUA7 517 aa17.41■□□□□ 0.38
USP4-206ENST00000461553 ARHGAP45Q92619 1136 aa17.41■□□□□ 0.38
USP4-206ENST00000461553 DEFB129Q9H1M3 183 aa17.41■□□□□ 0.38
USP4-206ENST00000461553 SERPINA10Q9UK55 444 aa17.41■□□□□ 0.38
USP4-206ENST00000461553 HNRNPUQ00839 825 aaKnown RBP eCLIP17.4■□□□□ 0.38
USP4-206ENST00000461553 TNFAIP1Q13829 316 aa17.4■□□□□ 0.38
USP4-206ENST00000461553 PRKG1Q13976 671 aa17.4■□□□□ 0.38
USP4-206ENST00000461553 PRMT6Q96LA8 375 aaPredicted RBP17.4■□□□□ 0.38
USP4-206ENST00000461553 MEIS3Q99687 375 aa17.4■□□□□ 0.38
USP4-206ENST00000461553 SIL1Q9H173 461 aa17.4■□□□□ 0.38
USP4-206ENST00000461553 FBXO3Q9UK99 471 aa17.4■□□□□ 0.38
USP4-206ENST00000461553 ANGEL1Q9UNK9 670 aaKnown RBP17.4■□□□□ 0.38
USP4-206ENST00000461553 IPO8O15397 1037 aaKnown RBP17.39■□□□□ 0.37
USP4-206ENST00000461553 CIAO1O76071 339 aa17.39■□□□□ 0.37
USP4-206ENST00000461553 FGFR2P21802 821 aa17.39■□□□□ 0.37
USP4-206ENST00000461553 MIER1Q8N108 512 aa17.39■□□□□ 0.37
USP4-206ENST00000461553 LPIN2Q92539 896 aa17.39■□□□□ 0.37
USP4-206ENST00000461553 MAST3O60307 1309 aa17.39■□□□□ 0.37
USP4-206ENST00000461553 AK9Q5TCS8 1911 aa17.39■□□□□ 0.37
USP4-206ENST00000461553 CRKP46108 304 aa17.38■□□□□ 0.37
USP4-206ENST00000461553 BCAMP50895 628 aa17.38■□□□□ 0.37
USP4-206ENST00000461553 SPDYE2Q495Y8 402 aa17.38■□□□□ 0.37
USP4-206ENST00000461553 INTS3Q68E01 1043 aaKnown RBP17.38■□□□□ 0.37
USP4-206ENST00000461553 PPP1R12BO60237 982 aaPredicted RBP17.37■□□□□ 0.37
USP4-206ENST00000461553 TRPA1O75762 1119 aa17.37■□□□□ 0.37
USP4-206ENST00000461553 GNAI3P08754 354 aa17.37■□□□□ 0.37
USP4-206ENST00000461553 SUPT20HL1Q3ZLR7 823 aa17.37■□□□□ 0.37
USP4-206ENST00000461553 ATG9AQ7Z3C6 839 aa17.37■□□□□ 0.37
USP4-206ENST00000461553 FRAT1Q92837 279 aaPredicted RBP17.37■□□□□ 0.37
USP4-206ENST00000461553 ABHD8Q96I13 439 aa17.37■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms