RNA–Protein interactions for RNA: ENST00000460912.6

SYNE1-215, Transcript of spectrin repeat containing nuclear envelope protein 1, human

TSL 1 (best)

Gene SYNE1, Length 3,664 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE1-215	ENST00000460912	SMC3	Q9UQE7	1217 aa		10.43	□□□□□ -0.74
SYNE1-215	ENST00000460912	RIPOR2	Q9Y4F9	1068 aa		10.43	□□□□□ -0.74
SYNE1-215	ENST00000460912	KLRG2	A4D1S0	409 aa	Predicted RBP	10.42	□□□□□ -0.74
SYNE1-215	ENST00000460912	NTSR2	O95665	410 aa		10.42	□□□□□ -0.74
SYNE1-215	ENST00000460912	TM4SF1	P30408	202 aa		10.42	□□□□□ -0.74
SYNE1-215	ENST00000460912	ZNF827	Q17R98	1081 aa		10.42	□□□□□ -0.74
SYNE1-215	ENST00000460912	KIAA1211	Q6ZU35	1233 aa		10.42	□□□□□ -0.74
SYNE1-215	ENST00000460912	NOL8	Q76FK4	1167 aa	Known RBP	10.42	□□□□□ -0.74
SYNE1-215	ENST00000460912	JARID2	Q92833	1246 aa	Predicted RBP	10.42	□□□□□ -0.74
SYNE1-215	ENST00000460912	HPS5	Q9UPZ3	1129 aa		10.42	□□□□□ -0.74
SYNE1-215	ENST00000460912	ATP5J2-PTCD1	G3V325	749 aa		10.42	□□□□□ -0.74
SYNE1-215	ENST00000460912	PTCD1	O75127	700 aa	Known RBP	10.42	□□□□□ -0.74
SYNE1-215	ENST00000460912	KDM4A	O75164	1064 aa		10.42	□□□□□ -0.74
SYNE1-215	ENST00000460912	LIG1	P18858	919 aa		10.42	□□□□□ -0.74
SYNE1-215	ENST00000460912	GTF2F1	P35269	517 aa	Known RBP eCLIP	10.42	□□□□□ -0.74
SYNE1-215	ENST00000460912	IL15	P40933	162 aa	Predicted RBP	10.42	□□□□□ -0.74
SYNE1-215	ENST00000460912	FOXD4L5	Q5VV16	416 aa	Predicted RBP	10.42	□□□□□ -0.74
SYNE1-215	ENST00000460912	CLEC4G	Q6UXB4	293 aa		10.42	□□□□□ -0.74
SYNE1-215	ENST00000460912	FOXD4L4	Q8WXT5	416 aa	Predicted RBP	10.42	□□□□□ -0.74
SYNE1-215	ENST00000460912	CWC25	Q9NXE8	425 aa	Predicted RBP	10.42	□□□□□ -0.74
SYNE1-215	ENST00000460912	MYH6	P13533	1939 aa		10.42	□□□□□ -0.74
SYNE1-215	ENST00000460912	ZMYM6	O95789	1325 aa		10.42	□□□□□ -0.74
SYNE1-215	ENST00000460912	TCRBV5S4A2T	A0A5A2	114 aa		10.42	□□□□□ -0.74
SYNE1-215	ENST00000460912	HSPD1	P10809	573 aa	Known RBP	10.42	□□□□□ -0.74
SYNE1-215	ENST00000460912	KRT32	Q14532	448 aa		10.42	□□□□□ -0.74
SYNE1-215	ENST00000460912	SLC10A5	Q5PT55	438 aa		10.42	□□□□□ -0.74
SYNE1-215	ENST00000460912	LEO1	Q8WVC0	666 aa	Predicted RBP	10.42	□□□□□ -0.74
SYNE1-215	ENST00000460912	DTNB	O60941	627 aa		10.41	□□□□□ -0.74
SYNE1-215	ENST00000460912	PCCA	P05165	728 aa	Predicted RBP	10.41	□□□□□ -0.74
SYNE1-215	ENST00000460912	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	10.41	□□□□□ -0.74
SYNE1-215	ENST00000460912	NLRP10	Q86W26	655 aa		10.41	□□□□□ -0.74
SYNE1-215	ENST00000460912	FSD1	Q9BTV5	496 aa		10.41	□□□□□ -0.74
SYNE1-215	ENST00000460912	PAG1	Q9NWQ8	432 aa		10.41	□□□□□ -0.74
SYNE1-215	ENST00000460912	IGF2BP2	Q9Y6M1	599 aa	Known RBP eCLIP	10.41	□□□□□ -0.74
SYNE1-215	ENST00000460912	JAK2	O60674	1132 aa		10.41	□□□□□ -0.74
SYNE1-215	ENST00000460912	ADRA2B	P18089	450 aa		10.41	□□□□□ -0.74
SYNE1-215	ENST00000460912	NAA16	Q6N069	864 aa	Predicted RBP	10.41	□□□□□ -0.74
SYNE1-215	ENST00000460912	BLOC1S2	Q6QNY1	142 aa		10.41	□□□□□ -0.74
SYNE1-215	ENST00000460912	AK7	Q96M32	723 aa		10.41	□□□□□ -0.74
SYNE1-215	ENST00000460912	PUS3	Q9BZE2	481 aa	Known RBP	10.41	□□□□□ -0.74
SYNE1-215	ENST00000460912	DICER1	Q9UPY3	1922 aa	Known RBP	10.41	□□□□□ -0.74
SYNE1-215	ENST00000460912	STARD3NL	O95772	234 aa		10.4	□□□□□ -0.74
SYNE1-215	ENST00000460912	FGFR2	P21802	821 aa		10.4	□□□□□ -0.74
SYNE1-215	ENST00000460912	ATP6V1A	P38606	617 aa		10.4	□□□□□ -0.74
SYNE1-215	ENST00000460912	SCARF1	Q14162	830 aa		10.4	□□□□□ -0.74
SYNE1-215	ENST00000460912	PLA2G4D	Q86XP0	818 aa		10.4	□□□□□ -0.74
SYNE1-215	ENST00000460912	MB21D2	Q8IYB1	491 aa	Predicted RBP	10.4	□□□□□ -0.74
SYNE1-215	ENST00000460912	OSBP2	Q969R2	916 aa		10.4	□□□□□ -0.74
SYNE1-215	ENST00000460912	NEK1	Q96PY6	1258 aa		10.4	□□□□□ -0.74
SYNE1-215	ENST00000460912	NARF	Q9UHQ1	456 aa		10.4	□□□□□ -0.74
SYNE1-215	ENST00000460912	PHF14	O94880	888 aa		10.4	□□□□□ -0.74
SYNE1-215	ENST00000460912	ZKSCAN1	P17029	563 aa	Predicted RBP	10.4	□□□□□ -0.74
SYNE1-215	ENST00000460912	ANTXR2	P58335	489 aa		10.4	□□□□□ -0.74
SYNE1-215	ENST00000460912	RBM10	P98175	930 aa	Known RBP	10.4	□□□□□ -0.74
SYNE1-215	ENST00000460912	CCDC39	Q9UFE4	941 aa		10.4	□□□□□ -0.74
SYNE1-215	ENST00000460912	RCOR1	Q9UKL0	485 aa		10.4	□□□□□ -0.74
SYNE1-215	ENST00000460912	HSP90AA2P	Q14568	343 aa	Predicted RBP	10.4	□□□□□ -0.74
SYNE1-215	ENST00000460912	SYAP1	Q96A49	352 aa	Predicted RBP	10.4	□□□□□ -0.74
SYNE1-215	ENST00000460912	ZNF274	Q96GC6	653 aa	Predicted RBP	10.4	□□□□□ -0.74
SYNE1-215	ENST00000460912	TACC3	Q9Y6A5	838 aa		10.4	□□□□□ -0.74
SYNE1-215	ENST00000460912	PNPLA7	Q6ZV29	1317 aa		10.4	□□□□□ -0.75
SYNE1-215	ENST00000460912	HCLS1	P14317	486 aa	Predicted RBP	10.39	□□□□□ -0.75
SYNE1-215	ENST00000460912		Q6ZUG5	572 aa		10.39	□□□□□ -0.75
SYNE1-215	ENST00000460912	USP25	Q9UHP3	1055 aa		10.39	□□□□□ -0.75
SYNE1-215	ENST00000460912	ATP6V1D	Q9Y5K8	247 aa		10.39	□□□□□ -0.75
SYNE1-215	ENST00000460912		E7EWF7	191 aa		10.39	□□□□□ -0.75
SYNE1-215	ENST00000460912	OS9	Q13438	667 aa	Predicted RBP	10.39	□□□□□ -0.75
SYNE1-215	ENST00000460912	DHX32	Q7L7V1	743 aa	Known RBP	10.39	□□□□□ -0.75
SYNE1-215	ENST00000460912	PIBF1	Q8WXW3	757 aa		10.39	□□□□□ -0.75
SYNE1-215	ENST00000460912	CLSTN2	Q9H4D0	955 aa		10.39	□□□□□ -0.75
SYNE1-215	ENST00000460912	TPM2	P07951	284 aa		10.39	□□□□□ -0.75
SYNE1-215	ENST00000460912	IQCB1	Q15051	598 aa		10.39	□□□□□ -0.75
SYNE1-215	ENST00000460912	RNF20	Q5VTR2	975 aa		10.39	□□□□□ -0.75
SYNE1-215	ENST00000460912	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	10.39	□□□□□ -0.75
SYNE1-215	ENST00000460912	SLX4	Q8IY92	1834 aa		10.39	□□□□□ -0.75
SYNE1-215	ENST00000460912	PDIA3	P30101	505 aa	Known RBP	10.38	□□□□□ -0.75
SYNE1-215	ENST00000460912	TCEANC2	Q96MN5	208 aa		10.38	□□□□□ -0.75
SYNE1-215	ENST00000460912	C10orf71	Q711Q0	1435 aa		10.38	□□□□□ -0.75
SYNE1-215	ENST00000460912		A0A1B0GUL7	405 aa		10.38	□□□□□ -0.75
SYNE1-215	ENST00000460912	RNF113A	O15541	343 aa	Known RBP	10.38	□□□□□ -0.75
SYNE1-215	ENST00000460912	ARID4A	P29374	1257 aa	Predicted RBP	10.38	□□□□□ -0.75
SYNE1-215	ENST00000460912	TDRD7	Q8NHU6	1098 aa	Known RBP	10.38	□□□□□ -0.75
SYNE1-215	ENST00000460912	GOLPH3L	Q9H4A5	285 aa		10.38	□□□□□ -0.75
SYNE1-215	ENST00000460912	KCND1	Q9NSA2	647 aa		10.38	□□□□□ -0.75
SYNE1-215	ENST00000460912	FAM237A	A0A1B0GTK4	181 aa		10.38	□□□□□ -0.75
SYNE1-215	ENST00000460912	HMGB1	P09429	215 aa	Known RBP	10.38	□□□□□ -0.75
SYNE1-215	ENST00000460912	TIMM10	P62072	90 aa		10.38	□□□□□ -0.75
SYNE1-215	ENST00000460912	FAM173B	Q6P4H8	233 aa		10.38	□□□□□ -0.75
SYNE1-215	ENST00000460912	DDX46	Q7L014	1031 aa	Known RBP	10.38	□□□□□ -0.75
SYNE1-215	ENST00000460912	ZNF594	Q96JF6	807 aa	Predicted RBP	10.38	□□□□□ -0.75
SYNE1-215	ENST00000460912	COL1A1	P02452	1464 aa	Predicted RBP	10.38	□□□□□ -0.75
SYNE1-215	ENST00000460912	ADORA1	P30542	326 aa		10.37	□□□□□ -0.75
SYNE1-215	ENST00000460912	TXNRD1	Q16881	649 aa		10.37	□□□□□ -0.75
SYNE1-215	ENST00000460912	GIMAP6	Q6P9H5	292 aa		10.37	□□□□□ -0.75
SYNE1-215	ENST00000460912	TRIM37	O94972	964 aa		10.37	□□□□□ -0.75
SYNE1-215	ENST00000460912	PDC	P20941	246 aa		10.37	□□□□□ -0.75
SYNE1-215	ENST00000460912	CCDC88A	Q3V6T2	1871 aa		10.37	□□□□□ -0.75
SYNE1-215	ENST00000460912	NR1I2	O75469	434 aa		10.37	□□□□□ -0.75
SYNE1-215	ENST00000460912	LARP1B	Q659C4	914 aa	Known RBP	10.37	□□□□□ -0.75
SYNE1-215	ENST00000460912	KIAA1524	Q8TCG1	905 aa		10.37	□□□□□ -0.75

Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms