RNA–Protein interactions for RNA: ENST00000460162.1

PTPN4-207, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-207ENST00000460162 ALDH1L2Q3SY69 923 aa28.7■■■□□ 2.18
PTPN4-207ENST00000460162 BICC1Q9H694 974 aaKnown RBP28.7■■■□□ 2.18
PTPN4-207ENST00000460162 CASP8AP2Q9UKL3 1982 aa28.7■■■□□ 2.18
PTPN4-207ENST00000460162 PLIN1O60240 522 aa28.69■■■□□ 2.18
PTPN4-207ENST00000460162 UBE4AQ14139 1066 aa28.69■■■□□ 2.18
PTPN4-207ENST00000460162 MTMR14Q8NCE2 650 aa28.68■■■□□ 2.18
PTPN4-207ENST00000460162 ABHD8Q96I13 439 aa28.68■■■□□ 2.18
PTPN4-207ENST00000460162 MROH5Q6ZUA9 1318 aa28.68■■■□□ 2.18
PTPN4-207ENST00000460162 DLGAP5Q15398 846 aa28.67■■■□□ 2.18
PTPN4-207ENST00000460162 PRAMEF18Q5VWM3 479 aa28.67■■■□□ 2.18
PTPN4-207ENST00000460162 REM2Q8IYK8 340 aaPredicted RBP28.67■■■□□ 2.18
PTPN4-207ENST00000460162 ANKRD44Q8N8A2 993 aa28.66■■■□□ 2.18
PTPN4-207ENST00000460162 PUS3Q9BZE2 481 aaKnown RBP28.66■■■□□ 2.18
PTPN4-207ENST00000460162 CCER2I3L3R5 266 aa28.65■■■□□ 2.18
PTPN4-207ENST00000460162 CDCA7LQ96GN5 454 aa28.65■■■□□ 2.18
PTPN4-207ENST00000460162 RIPOR2Q9Y4F9 1068 aa28.65■■■□□ 2.18
PTPN4-207ENST00000460162 FAM205AQ6ZU69 1335 aa28.65■■■□□ 2.18
PTPN4-207ENST00000460162 CT47B1P0C2W7 299 aaPredicted RBP28.64■■■□□ 2.18
PTPN4-207ENST00000460162 TTLL12Q14166 644 aaPredicted RBP28.64■■■□□ 2.18
PTPN4-207ENST00000460162 MOB2Q70IA6 237 aa28.64■■■□□ 2.18
PTPN4-207ENST00000460162 TRMT2AQ8IZ69 625 aaKnown RBP28.64■■■□□ 2.18
PTPN4-207ENST00000460162 SMC4Q9NTJ3 1288 aa28.64■■■□□ 2.18
PTPN4-207ENST00000460162 TDRD7Q8NHU6 1098 aaKnown RBP28.63■■■□□ 2.17
PTPN4-207ENST00000460162 SPDYE2BA6NHP3 402 aa28.62■■■□□ 2.17
PTPN4-207ENST00000460162 F8W031 263 aaPredicted RBP28.62■■■□□ 2.17
PTPN4-207ENST00000460162 UBE2Q2LH0YL09 131 aa28.62■■■□□ 2.17
PTPN4-207ENST00000460162 MYO1BO43795 1136 aa28.62■■■□□ 2.17
PTPN4-207ENST00000460162 SPDYE6P0CI01 402 aa28.62■■■□□ 2.17
PTPN4-207ENST00000460162 HIBADHP31937 336 aaKnown RBP28.62■■■□□ 2.17
PTPN4-207ENST00000460162 CSRNP1Q96S65 589 aa28.62■■■□□ 2.17
PTPN4-207ENST00000460162 USP44Q9H0E7 712 aa28.62■■■□□ 2.17
PTPN4-207ENST00000460162 JAG2Q9Y219 1238 aa28.62■■■□□ 2.17
PTPN4-207ENST00000460162 PPP2R3BQ9Y5P8 575 aa28.62■■■□□ 2.17
PTPN4-207ENST00000460162 GYG1P46976 350 aa28.61■■■□□ 2.17
PTPN4-207ENST00000460162 CFAP100Q494V2 611 aa28.61■■■□□ 2.17
PTPN4-207ENST00000460162 RNF186Q9NXI6 227 aa28.61■■■□□ 2.17
PTPN4-207ENST00000460162 ARMC9Q7Z3E5 817 aa28.6■■■□□ 2.17
PTPN4-207ENST00000460162 FAM84BQ96KN1 310 aaPredicted RBP28.6■■■□□ 2.17
PTPN4-207ENST00000460162 LRRC24Q50LG9 513 aa28.59■■■□□ 2.17
PTPN4-207ENST00000460162 METTL24Q5JXM2 366 aa28.59■■■□□ 2.17
PTPN4-207ENST00000460162 MFSD14BQ5SR56 506 aa28.59■■■□□ 2.17
PTPN4-207ENST00000460162 DEFB129Q9H1M3 183 aa28.59■■■□□ 2.17
PTPN4-207ENST00000460162 SSC5DA1L4H1 1573 aa28.58■■■□□ 2.17
PTPN4-207ENST00000460162 LAMB1P07942 1786 aa28.58■■■□□ 2.17
PTPN4-207ENST00000460162 TRPA1O75762 1119 aa28.58■■■□□ 2.17
PTPN4-207ENST00000460162 VGLL2Q8N8G2 317 aa28.58■■■□□ 2.17
PTPN4-207ENST00000460162 PCDHAC2Q9Y5I4 1007 aa28.58■■■□□ 2.17
PTPN4-207ENST00000460162 MCOLN1Q9GZU1 580 aa28.57■■■□□ 2.16
PTPN4-207ENST00000460162 PDE8BO95263 885 aa28.56■■■□□ 2.16
PTPN4-207ENST00000460162 VPS37DQ86XT2 251 aa28.56■■■□□ 2.16
PTPN4-207ENST00000460162 PRMT6Q96LA8 375 aaPredicted RBP28.56■■■□□ 2.16
PTPN4-207ENST00000460162 MYH13Q9UKX3 1938 aa28.56■■■□□ 2.16
PTPN4-207ENST00000460162 KIF16BQ96L93 1317 aa28.55■■■□□ 2.16
PTPN4-207ENST00000460162 CLRN2A0PK11 232 aa28.55■■■□□ 2.16
PTPN4-207ENST00000460162 CAVIN4Q5BKX8 364 aa28.55■■■□□ 2.16
PTPN4-207ENST00000460162 SERPINA10Q9UK55 444 aa28.55■■■□□ 2.16
PTPN4-207ENST00000460162 TTF2Q9UNY4 1162 aaKnown RBP28.55■■■□□ 2.16
PTPN4-207ENST00000460162 RBM5P52756 815 aaKnown RBP eCLIP28.54■■■□□ 2.16
PTPN4-207ENST00000460162 DGKZQ13574 1117 aa28.54■■■□□ 2.16
PTPN4-207ENST00000460162 LDLRAD1Q5T700 205 aa28.54■■■□□ 2.16
PTPN4-207ENST00000460162 FBXO33Q7Z6M2 555 aa28.54■■■□□ 2.16
PTPN4-207ENST00000460162 KLHDC4Q8TBB5 520 aa28.54■■■□□ 2.16
PTPN4-207ENST00000460162 VEZTQ9HBM0 779 aa28.54■■■□□ 2.16
PTPN4-207ENST00000460162 ANGEL1Q9UNK9 670 aaKnown RBP28.54■■■□□ 2.16
PTPN4-207ENST00000460162 PTPN12Q05209 780 aaKnown RBP28.53■■■□□ 2.16
PTPN4-207ENST00000460162 PRKG1Q13976 671 aa28.53■■■□□ 2.16
PTPN4-207ENST00000460162 MAP3K11Q16584 847 aa28.53■■■□□ 2.16
PTPN4-207ENST00000460162 AOX1Q06278 1338 aa28.52■■■□□ 2.16
PTPN4-207ENST00000460162 PUM3Q15397 648 aaKnown RBP28.52■■■□□ 2.16
PTPN4-207ENST00000460162 TBC1D22AQ8WUA7 517 aa28.52■■■□□ 2.16
PTPN4-207ENST00000460162 API5Q9BZZ5 524 aaKnown RBP28.52■■■□□ 2.16
PTPN4-207ENST00000460162 PPP1R12BO60237 982 aaPredicted RBP28.51■■■□□ 2.15
PTPN4-207ENST00000460162 UBTFL1P0CB47 393 aaPredicted RBP28.51■■■□□ 2.15
PTPN4-207ENST00000460162 RFX5P48382 616 aaPredicted RBP28.51■■■□□ 2.15
PTPN4-207ENST00000460162 TNFAIP1Q13829 316 aa28.51■■■□□ 2.15
PTPN4-207ENST00000460162 SPDYE2Q495Y8 402 aa28.51■■■□□ 2.15
PTPN4-207ENST00000460162 OTOFQ9HC10 1997 aa28.5■■■□□ 2.15
PTPN4-207ENST00000460162 EYA2O00167 538 aa28.5■■■□□ 2.15
PTPN4-207ENST00000460162 SREBF2Q12772 1141 aa28.5■■■□□ 2.15
PTPN4-207ENST00000460162 SUPT20HL1Q3ZLR7 823 aa28.5■■■□□ 2.15
PTPN4-207ENST00000460162 NOB1Q9ULX3 412 aaKnown RBP28.5■■■□□ 2.15
PTPN4-207ENST00000460162 UNCXA6NJT0 531 aa28.49■■■□□ 2.15
PTPN4-207ENST00000460162 CCDC85CA6NKD9 419 aa28.49■■■□□ 2.15
PTPN4-207ENST00000460162 IFIT1P09914 478 aaKnown RBP28.49■■■□□ 2.15
PTPN4-207ENST00000460162 FGFR2P21802 821 aa28.49■■■□□ 2.15
PTPN4-207ENST00000460162 TM4SF4P48230 202 aa28.49■■■□□ 2.15
PTPN4-207ENST00000460162 IQSEC3Q9UPP2 1182 aaPredicted RBP28.49■■■□□ 2.15
PTPN4-207ENST00000460162 FRAT2O75474 233 aaPredicted RBP28.48■■■□□ 2.15
PTPN4-207ENST00000460162 CRKP46108 304 aa28.48■■■□□ 2.15
PTPN4-207ENST00000460162 FBXO3Q9UK99 471 aa28.48■■■□□ 2.15
PTPN4-207ENST00000460162 HDLBPQ00341 1268 aaKnown RBP28.47■■■□□ 2.15
PTPN4-207ENST00000460162 MKRN3Q13064 507 aaKnown RBP28.47■■■□□ 2.15
PTPN4-207ENST00000460162 CHAF1AQ13111 956 aaPredicted RBP28.47■■■□□ 2.15
PTPN4-207ENST00000460162 RASA3Q14644 834 aa28.47■■■□□ 2.15
PTPN4-207ENST00000460162 SPRYD7Q5W111 196 aa28.47■■■□□ 2.15
PTPN4-207ENST00000460162 DZIP1LQ8IYY4 767 aaKnown RBP28.47■■■□□ 2.15
PTPN4-207ENST00000460162 ZNF70Q9UC06 446 aaPredicted RBP28.47■■■□□ 2.15
PTPN4-207ENST00000460162 FZD1Q9UP38 647 aa28.47■■■□□ 2.15
PTPN4-207ENST00000460162 HDAC5Q9UQL6 1122 aa28.47■■■□□ 2.15
PTPN4-207ENST00000460162 SLC5A1P13866 664 aa28.45■■■□□ 2.14
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms