RNA–Protein interactions for RNA: ENST00000448428.1

PRPF40A-203, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 5

Gene PRPF40A, Length 490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-203ENST00000448428 MMP14P50281 582 aa15.88■□□□□ 0.13
PRPF40A-203ENST00000448428 FKBP1AP62942 108 aaKnown RBP15.88■□□□□ 0.13
PRPF40A-203ENST00000448428 MTX1Q13505 466 aa15.88■□□□□ 0.13
PRPF40A-203ENST00000448428 PUM3Q15397 648 aaKnown RBP15.88■□□□□ 0.13
PRPF40A-203ENST00000448428 DEFB115Q30KQ5 88 aa15.88■□□□□ 0.13
PRPF40A-203ENST00000448428 FAM205AQ6ZU69 1335 aa15.88■□□□□ 0.13
PRPF40A-203ENST00000448428 WNT10BO00744 389 aa15.87■□□□□ 0.13
PRPF40A-203ENST00000448428 VEGFBP49765 207 aa15.87■□□□□ 0.13
PRPF40A-203ENST00000448428 BCAMP50895 628 aa15.87■□□□□ 0.13
PRPF40A-203ENST00000448428 CAVIN4Q5BKX8 364 aa15.87■□□□□ 0.13
PRPF40A-203ENST00000448428 VPS37DQ86XT2 251 aa15.87■□□□□ 0.13
PRPF40A-203ENST00000448428 SULF1Q8IWU6 871 aa15.87■□□□□ 0.13
PRPF40A-203ENST00000448428 FTSJ3Q8IY81 847 aaKnown RBP15.87■□□□□ 0.13
PRPF40A-203ENST00000448428 ZNF408Q9H9D4 720 aa15.87■□□□□ 0.13
PRPF40A-203ENST00000448428 CEP126Q9P2H0 1117 aa15.87■□□□□ 0.13
PRPF40A-203ENST00000448428 HDAC9Q9UKV0 1011 aa15.87■□□□□ 0.13
PRPF40A-203ENST00000448428 IQSEC3Q9UPP2 1182 aaPredicted RBP15.87■□□□□ 0.13
PRPF40A-203ENST00000448428 F8W031 263 aaPredicted RBP15.86■□□□□ 0.13
PRPF40A-203ENST00000448428 IFIT1P09914 478 aaKnown RBP15.86■□□□□ 0.13
PRPF40A-203ENST00000448428 IL15P40933 162 aaPredicted RBP15.86■□□□□ 0.13
PRPF40A-203ENST00000448428 LPIN2Q92539 896 aa15.86■□□□□ 0.13
PRPF40A-203ENST00000448428 ZBED3Q96IU2 234 aaPredicted RBP15.86■□□□□ 0.13
PRPF40A-203ENST00000448428 TLL2Q9Y6L7 1015 aa15.86■□□□□ 0.13
PRPF40A-203ENST00000448428 PNMA6EA0A0J9YXQ4 647 aa15.85■□□□□ 0.13
PRPF40A-203ENST00000448428 ZBTB7BO15156 539 aaPredicted RBP15.85■□□□□ 0.13
PRPF40A-203ENST00000448428 SLC5A1P13866 664 aa15.85■□□□□ 0.13
PRPF40A-203ENST00000448428 MFSD14BQ5SR56 506 aa15.85■□□□□ 0.13
PRPF40A-203ENST00000448428 ITPRIPQ8IWB1 547 aa15.85■□□□□ 0.13
PRPF40A-203ENST00000448428 PANK1Q8TE04 598 aa15.85■□□□□ 0.13
PRPF40A-203ENST00000448428 SCAF8Q9UPN6 1271 aaKnown RBP15.85■□□□□ 0.13
PRPF40A-203ENST00000448428 PITPNM2Q9BZ72 1349 aa15.85■□□□□ 0.13
PRPF40A-203ENST00000448428 SAPCD2Q86UD0 394 aa15.84■□□□□ 0.13
PRPF40A-203ENST00000448428 PCDHAC2Q9Y5I4 1007 aa15.84■□□□□ 0.13
PRPF40A-203ENST00000448428 FRAT2O75474 233 aaPredicted RBP15.83■□□□□ 0.12
PRPF40A-203ENST00000448428 CHAF1AQ13111 956 aaPredicted RBP15.83■□□□□ 0.12
PRPF40A-203ENST00000448428 DLGAP5Q15398 846 aa15.83■□□□□ 0.12
PRPF40A-203ENST00000448428 ATP2B3Q16720 1220 aa15.83■□□□□ 0.12
PRPF40A-203ENST00000448428 MTMR14Q8NCE2 650 aa15.83■□□□□ 0.12
PRPF40A-203ENST00000448428 CDCA5Q96FF9 252 aa15.83■□□□□ 0.12
PRPF40A-203ENST00000448428 RCAN3Q9UKA8 241 aa15.83■□□□□ 0.12
PRPF40A-203ENST00000448428 MYH13Q9UKX3 1938 aa15.83■□□□□ 0.12
PRPF40A-203ENST00000448428 WDR33Q9C0J8 1336 aaKnown RBP15.83■□□□□ 0.12
PRPF40A-203ENST00000448428 ECM29Q5VYK3 1845 aa15.82■□□□□ 0.12
PRPF40A-203ENST00000448428 ATP8B2P98198 1209 aa15.82■□□□□ 0.12
PRPF40A-203ENST00000448428 GRIK5Q16478 980 aa15.82■□□□□ 0.12
PRPF40A-203ENST00000448428 CFAP100Q494V2 611 aa15.82■□□□□ 0.12
PRPF40A-203ENST00000448428 PRMT6Q96LA8 375 aaPredicted RBP15.82■□□□□ 0.12
PRPF40A-203ENST00000448428 C1orf115Q9H7X2 142 aa15.82■□□□□ 0.12
PRPF40A-203ENST00000448428 GBA2Q9HCG7 927 aaPredicted RBP15.82■□□□□ 0.12
PRPF40A-203ENST00000448428 TTF2Q9UNY4 1162 aaKnown RBP15.82■□□□□ 0.12
PRPF40A-203ENST00000448428 ARAP2Q8WZ64 1704 aa15.82■□□□□ 0.12
PRPF40A-203ENST00000448428 TIMM10P62072 90 aa15.81■□□□□ 0.12
PRPF40A-203ENST00000448428 TFCP2Q12800 502 aa15.81■□□□□ 0.12
PRPF40A-203ENST00000448428 PRAMEF18Q5VWM3 479 aa15.81■□□□□ 0.12
PRPF40A-203ENST00000448428 CYP4F22Q6NT55 531 aa15.81■□□□□ 0.12
PRPF40A-203ENST00000448428 PAXIP1Q6ZW49 1069 aaPredicted RBP15.81■□□□□ 0.12
PRPF40A-203ENST00000448428 C2orf69Q8N8R5 385 aa15.81■□□□□ 0.12
PRPF40A-203ENST00000448428 CAPNS2Q96L46 248 aa15.81■□□□□ 0.12
PRPF40A-203ENST00000448428 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP15.81■□□□□ 0.12
PRPF40A-203ENST00000448428 SPDYE2BA6NHP3 402 aa15.8■□□□□ 0.12
PRPF40A-203ENST00000448428 SPDYE6P0CI01 402 aa15.8■□□□□ 0.12
PRPF40A-203ENST00000448428 MS4A1P11836 297 aa15.8■□□□□ 0.12
PRPF40A-203ENST00000448428 ADORA1P30542 326 aa15.8■□□□□ 0.12
PRPF40A-203ENST00000448428 ECE1P42892 770 aa15.8■□□□□ 0.12
PRPF40A-203ENST00000448428 RBM5P52756 815 aaKnown RBP eCLIP15.8■□□□□ 0.12
PRPF40A-203ENST00000448428 GRM1Q13255 1194 aa15.8■□□□□ 0.12
PRPF40A-203ENST00000448428 POLA2Q14181 598 aa15.8■□□□□ 0.12
PRPF40A-203ENST00000448428 SSH3Q8TE77 659 aa15.8■□□□□ 0.12
PRPF40A-203ENST00000448428 TBC1D22AQ8WUA7 517 aa15.8■□□□□ 0.12
PRPF40A-203ENST00000448428 HHIPL1Q96JK4 782 aa15.8■□□□□ 0.12
PRPF40A-203ENST00000448428 AOX1Q06278 1338 aa15.79■□□□□ 0.12
PRPF40A-203ENST00000448428 HSPA1AP0DMV8 641 aaKnown RBP15.79■□□□□ 0.12
PRPF40A-203ENST00000448428 HSPA1BP0DMV9 641 aaKnown RBP15.79■□□□□ 0.12
PRPF40A-203ENST00000448428 PHKA1P46020 1223 aa15.79■□□□□ 0.12
PRPF40A-203ENST00000448428 HUNKP57058 714 aa15.79■□□□□ 0.12
PRPF40A-203ENST00000448428 G3BP1Q13283 466 aaKnown RBP eCLIP15.79■□□□□ 0.126e-8■□□□□ 11.3
PRPF40A-203ENST00000448428 APOBEC3FQ8IUX4 373 aaKnown RBP15.79■□□□□ 0.12
PRPF40A-203ENST00000448428 SERPINA10Q9UK55 444 aa15.79■□□□□ 0.12
PRPF40A-203ENST00000448428 AKAP2Q9Y2D5 859 aa15.79■□□□□ 0.12
PRPF40A-203ENST00000448428 A0A1B0GUL7 405 aa15.78■□□□□ 0.12
PRPF40A-203ENST00000448428 GNL3LQ9NVN8 582 aaKnown RBP15.78■□□□□ 0.12
PRPF40A-203ENST00000448428 CLRN2A0PK11 232 aa15.77■□□□□ 0.12
PRPF40A-203ENST00000448428 MYO1BO43795 1136 aa15.77■□□□□ 0.12
PRPF40A-203ENST00000448428 AOC2O75106 756 aa15.77■□□□□ 0.12
PRPF40A-203ENST00000448428 CRKP46108 304 aa15.77■□□□□ 0.12
PRPF40A-203ENST00000448428 CCDC102BQ68D86 513 aa15.77■□□□□ 0.12
PRPF40A-203ENST00000448428 WDR66Q8TBY9 1149 aa15.77■□□□□ 0.12
PRPF40A-203ENST00000448428 XAGE2Q96GT9 111 aa15.77■□□□□ 0.12
PRPF40A-203ENST00000448428 COG6Q9Y2V7 657 aa15.77■□□□□ 0.12
PRPF40A-203ENST00000448428 COL1A1P02452 1464 aaPredicted RBP15.77■□□□□ 0.11
PRPF40A-203ENST00000448428 HDLBPQ00341 1268 aaKnown RBP15.76■□□□□ 0.11
PRPF40A-203ENST00000448428 MVPQ14764 893 aaKnown RBP15.76■□□□□ 0.11
PRPF40A-203ENST00000448428 NEUROD6Q96NK8 337 aa15.76■□□□□ 0.11
PRPF40A-203ENST00000448428 MRIQ9BWK5 157 aa15.76■□□□□ 0.11
PRPF40A-203ENST00000448428 DEFB129Q9H1M3 183 aa15.76■□□□□ 0.11
PRPF40A-203ENST00000448428 TDRD3Q9H7E2 651 aaKnown RBP15.76■□□□□ 0.11
PRPF40A-203ENST00000448428 WBP1LQ9NX94 342 aa15.76■□□□□ 0.11
PRPF40A-203ENST00000448428 SUGT1Q9Y2Z0 365 aa15.76■□□□□ 0.11
PRPF40A-203ENST00000448428 SEMA3EO15041 775 aa15.75■□□□□ 0.11
PRPF40A-203ENST00000448428 ZBTB22O15209 634 aa15.75■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms