RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 JMYQ8N9B5 988 aa18.9■□□□□ 0.62
LIMS3-201ENST00000437679 PA2G4Q9UQ80 394 aaKnown RBP18.9■□□□□ 0.62
LIMS3-201ENST00000437679 JAG2Q9Y219 1238 aa18.9■□□□□ 0.62
LIMS3-201ENST00000437679 CNTNAP1P78357 1384 aa18.9■□□□□ 0.62
LIMS3-201ENST00000437679 FRAT2O75474 233 aaPredicted RBP18.89■□□□□ 0.61
LIMS3-201ENST00000437679 MS4A1P11836 297 aa18.89■□□□□ 0.61
LIMS3-201ENST00000437679 FGFR2P21802 821 aa18.89■□□□□ 0.61
LIMS3-201ENST00000437679 CST9Q5W186 159 aa18.89■□□□□ 0.61
LIMS3-201ENST00000437679 LPIN2Q92539 896 aa18.89■□□□□ 0.61
LIMS3-201ENST00000437679 ZNF408Q9H9D4 720 aa18.89■□□□□ 0.61
LIMS3-201ENST00000437679 ASTN2O75129 1339 aaPredicted RBP18.89■□□□□ 0.61
LIMS3-201ENST00000437679 FAM205AQ6ZU69 1335 aa18.89■□□□□ 0.61
LIMS3-201ENST00000437679 RLBP1P12271 317 aa18.88■□□□□ 0.61
LIMS3-201ENST00000437679 ANGEL2Q5VTE6 544 aaKnown RBP18.88■□□□□ 0.61
LIMS3-201ENST00000437679 CERS5Q8N5B7 392 aa18.88■□□□□ 0.61
LIMS3-201ENST00000437679 RCAN3Q9UKA8 241 aa18.88■□□□□ 0.61
LIMS3-201ENST00000437679 RASSF10A6NK89 507 aa18.87■□□□□ 0.61
LIMS3-201ENST00000437679 ADM5C9JUS6 153 aa18.87■□□□□ 0.61
LIMS3-201ENST00000437679 F8W031 263 aaPredicted RBP18.87■□□□□ 0.61
LIMS3-201ENST00000437679 BCAMP50895 628 aa18.87■□□□□ 0.61
LIMS3-201ENST00000437679 DEFB115Q30KQ5 88 aa18.87■□□□□ 0.61
LIMS3-201ENST00000437679 NBPF9Q3BBW0 867 aa18.87■□□□□ 0.61
LIMS3-201ENST00000437679 PITPNM2Q9BZ72 1349 aa18.87■□□□□ 0.61
LIMS3-201ENST00000437679 WNT10BO00744 389 aa18.86■□□□□ 0.61
LIMS3-201ENST00000437679 ATP2B3Q16720 1220 aa18.86■□□□□ 0.61
LIMS3-201ENST00000437679 MFSD14BQ5SR56 506 aa18.86■□□□□ 0.61
LIMS3-201ENST00000437679 IQSEC3Q9UPP2 1182 aaPredicted RBP18.86■□□□□ 0.61
LIMS3-201ENST00000437679 TLL2Q9Y6L7 1015 aa18.86■□□□□ 0.61
LIMS3-201ENST00000437679 ZBTB7BO15156 539 aaPredicted RBP18.85■□□□□ 0.61
LIMS3-201ENST00000437679 CHAF1AQ13111 956 aaPredicted RBP18.85■□□□□ 0.61
LIMS3-201ENST00000437679 DLGAP5Q15398 846 aa18.85■□□□□ 0.61
LIMS3-201ENST00000437679 PANK1Q8TE04 598 aa18.85■□□□□ 0.61
LIMS3-201ENST00000437679 PNMA6EA0A0J9YXQ4 647 aa18.84■□□□□ 0.61
LIMS3-201ENST00000437679 VEGFBP49765 207 aa18.84■□□□□ 0.61
LIMS3-201ENST00000437679 DLK2Q6UY11 383 aa18.84■□□□□ 0.61
LIMS3-201ENST00000437679 PAXIP1Q6ZW49 1069 aaPredicted RBP18.84■□□□□ 0.61
LIMS3-201ENST00000437679 MTMR14Q8NCE2 650 aa18.84■□□□□ 0.61
LIMS3-201ENST00000437679 TBC1D22AQ8WUA7 517 aa18.84■□□□□ 0.61
LIMS3-201ENST00000437679 G3BP1Q13283 466 aaKnown RBP eCLIP18.83■□□□□ 0.6
LIMS3-201ENST00000437679 CFAP100Q494V2 611 aa18.83■□□□□ 0.6
LIMS3-201ENST00000437679 CDCA5Q96FF9 252 aa18.83■□□□□ 0.6
LIMS3-201ENST00000437679 C1orf115Q9H7X2 142 aa18.83■□□□□ 0.6
LIMS3-201ENST00000437679 GNL3LQ9NVN8 582 aaKnown RBP18.83■□□□□ 0.6
LIMS3-201ENST00000437679 TTF2Q9UNY4 1162 aaKnown RBP18.83■□□□□ 0.6
LIMS3-201ENST00000437679 MYO1BO43795 1136 aa18.82■□□□□ 0.6
LIMS3-201ENST00000437679 ECE1P42892 770 aa18.82■□□□□ 0.6
LIMS3-201ENST00000437679 RBM5P52756 815 aaKnown RBP eCLIP18.82■□□□□ 0.6
LIMS3-201ENST00000437679 ATP8B2P98198 1209 aa18.82■□□□□ 0.6
LIMS3-201ENST00000437679 SAPCD2Q86UD0 394 aa18.82■□□□□ 0.6
LIMS3-201ENST00000437679 APOBEC3FQ8IUX4 373 aaKnown RBP18.82■□□□□ 0.6
LIMS3-201ENST00000437679 C2orf69Q8N8R5 385 aa18.82■□□□□ 0.6
LIMS3-201ENST00000437679 ZBED3Q96IU2 234 aaPredicted RBP18.82■□□□□ 0.6
LIMS3-201ENST00000437679 AKAP2Q9Y2D5 859 aa18.82■□□□□ 0.6
LIMS3-201ENST00000437679 ARAP2Q8WZ64 1704 aa18.81■□□□□ 0.6
LIMS3-201ENST00000437679 TFCP2Q12800 502 aa18.81■□□□□ 0.6
LIMS3-201ENST00000437679 GBA2Q9HCG7 927 aaPredicted RBP18.81■□□□□ 0.6
LIMS3-201ENST00000437679 MYH13Q9UKX3 1938 aa18.8■□□□□ 0.6
LIMS3-201ENST00000437679 WDR33Q9C0J8 1336 aaKnown RBP18.8■□□□□ 0.6
LIMS3-201ENST00000437679 PCNTO95613 3336 aa18.8■□□□□ 0.6
LIMS3-201ENST00000437679 SPDYE2BA6NHP3 402 aa18.8■□□□□ 0.6
LIMS3-201ENST00000437679 SPDYE6P0CI01 402 aa18.8■□□□□ 0.6
LIMS3-201ENST00000437679 POLA2Q14181 598 aa18.8■□□□□ 0.6
LIMS3-201ENST00000437679 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.8■□□□□ 0.6
LIMS3-201ENST00000437679 SSH3Q8TE77 659 aa18.8■□□□□ 0.6
LIMS3-201ENST00000437679 HHIPL1Q96JK4 782 aa18.8■□□□□ 0.6
LIMS3-201ENST00000437679 CAPNS2Q96L46 248 aa18.8■□□□□ 0.6
LIMS3-201ENST00000437679 SERPINA10Q9UK55 444 aa18.8■□□□□ 0.6
LIMS3-201ENST00000437679 SCAF8Q9UPN6 1271 aaKnown RBP18.8■□□□□ 0.6
LIMS3-201ENST00000437679 A0A1B0GUL7 405 aa18.79■□□□□ 0.6
LIMS3-201ENST00000437679 HUNKP57058 714 aa18.79■□□□□ 0.6
LIMS3-201ENST00000437679 TIMM10P62072 90 aa18.79■□□□□ 0.6
LIMS3-201ENST00000437679 GRM1Q13255 1194 aa18.79■□□□□ 0.6
LIMS3-201ENST00000437679 OS9Q13438 667 aaPredicted RBP18.79■□□□□ 0.6
LIMS3-201ENST00000437679 MVPQ14764 893 aaKnown RBP18.79■□□□□ 0.6
LIMS3-201ENST00000437679 CYP4F22Q6NT55 531 aa18.79■□□□□ 0.6
LIMS3-201ENST00000437679 WDR66Q8TBY9 1149 aa18.79■□□□□ 0.6
LIMS3-201ENST00000437679 PRMT6Q96LA8 375 aaPredicted RBP18.79■□□□□ 0.6
LIMS3-201ENST00000437679 SUGT1Q9Y2Z0 365 aa18.79■□□□□ 0.6
LIMS3-201ENST00000437679 PCDHAC2Q9Y5I4 1007 aa18.79■□□□□ 0.6
LIMS3-201ENST00000437679 SEMA3EO15041 775 aa18.78■□□□□ 0.6
LIMS3-201ENST00000437679 ADORA1P30542 326 aa18.78■□□□□ 0.6
LIMS3-201ENST00000437679 DDX19BQ9UMR2 479 aa18.78■□□□□ 0.6
LIMS3-201ENST00000437679 COG6Q9Y2V7 657 aa18.78■□□□□ 0.6
LIMS3-201ENST00000437679 ECM29Q5VYK3 1845 aa18.78■□□□□ 0.6
LIMS3-201ENST00000437679 MAST3O60307 1309 aa18.77■□□□□ 0.6
LIMS3-201ENST00000437679 SURF6O75683 361 aaKnown RBP18.77■□□□□ 0.6
LIMS3-201ENST00000437679 HSPA1AP0DMV8 641 aaKnown RBP18.77■□□□□ 0.6
LIMS3-201ENST00000437679 HSPA1BP0DMV9 641 aaKnown RBP18.77■□□□□ 0.6
LIMS3-201ENST00000437679 NF2P35240 595 aa18.77■□□□□ 0.6
LIMS3-201ENST00000437679 PHKA1P46020 1223 aa18.77■□□□□ 0.6
LIMS3-201ENST00000437679 CRKP46108 304 aa18.77■□□□□ 0.6
LIMS3-201ENST00000437679 HDLBPQ00341 1268 aaKnown RBP18.77■□□□□ 0.6
LIMS3-201ENST00000437679 CCDC102BQ68D86 513 aa18.77■□□□□ 0.6
LIMS3-201ENST00000437679 XAGE2Q96GT9 111 aa18.77■□□□□ 0.6
LIMS3-201ENST00000437679 NEUROD6Q96NK8 337 aa18.77■□□□□ 0.6
LIMS3-201ENST00000437679 CHMP4BQ9H444 224 aaKnown RBP18.77■□□□□ 0.6
LIMS3-201ENST00000437679 DENND2AQ9ULE3 1009 aa18.77■□□□□ 0.6
LIMS3-201ENST00000437679 CLRN2A0PK11 232 aa18.76■□□□□ 0.59
LIMS3-201ENST00000437679 FKBP1BP68106 108 aa18.76■□□□□ 0.59
LIMS3-201ENST00000437679 GRIK5Q16478 980 aa18.76■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 204.6 ms