RNA–Protein interactions for RNA: ENST00000435823.1

COL28A1-203, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL28A1, Length 678 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-203ENST00000435823 ATP2B3Q16720 1220 aa14.2□□□□□ -0.14
COL28A1-203ENST00000435823 RBM26Q5T8P6 1007 aaKnown RBP14.2□□□□□ -0.14
COL28A1-203ENST00000435823 MAP1SQ66K74 1059 aaPredicted RBP14.2□□□□□ -0.14
COL28A1-203ENST00000435823 OGFOD1Q8N543 542 aa14.2□□□□□ -0.14
COL28A1-203ENST00000435823 TRPM4Q8TD43 1214 aa14.2□□□□□ -0.14
COL28A1-203ENST00000435823 ZC3H15Q8WU90 426 aaKnown RBP14.2□□□□□ -0.14
COL28A1-203ENST00000435823 LPIN2Q92539 896 aa14.2□□□□□ -0.14
COL28A1-203ENST00000435823 FAM84BQ96KN1 310 aaPredicted RBP14.2□□□□□ -0.14
COL28A1-203ENST00000435823 FRAT2O75474 233 aaPredicted RBP14.19□□□□□ -0.14
COL28A1-203ENST00000435823 FGFR2P21802 821 aa14.19□□□□□ -0.14
COL28A1-203ENST00000435823 MMP14P50281 582 aa14.19□□□□□ -0.14
COL28A1-203ENST00000435823 ZNF280AP59817 542 aaPredicted RBP14.19□□□□□ -0.14
COL28A1-203ENST00000435823 G3BP1Q13283 466 aaKnown RBP eCLIP14.19□□□□□ -0.14
COL28A1-203ENST00000435823 KIF4BQ2VIQ3 1234 aa14.19□□□□□ -0.14
COL28A1-203ENST00000435823 TBC1D10BQ4KMP7 808 aaPredicted RBP14.19□□□□□ -0.14
COL28A1-203ENST00000435823 SAMD7Q7Z3H4 446 aa14.19□□□□□ -0.14
COL28A1-203ENST00000435823 CNTROBQ8N137 903 aa14.19□□□□□ -0.14
COL28A1-203ENST00000435823 GMLQ99445 158 aa14.19□□□□□ -0.14
COL28A1-203ENST00000435823 HDAC9Q9UKV0 1011 aa14.19□□□□□ -0.14
COL28A1-203ENST00000435823 C19orf67A6NJJ6 358 aa14.18□□□□□ -0.14
COL28A1-203ENST00000435823 SASH1O94885 1247 aa14.18□□□□□ -0.14
COL28A1-203ENST00000435823 HIRAP54198 1017 aaPredicted RBP14.18□□□□□ -0.14
COL28A1-203ENST00000435823 FKBP1AP62942 108 aaKnown RBP14.18□□□□□ -0.14
COL28A1-203ENST00000435823 FBXO33Q7Z6M2 555 aa14.18□□□□□ -0.14
COL28A1-203ENST00000435823 TDRD7Q8NHU6 1098 aaKnown RBP14.18□□□□□ -0.14
COL28A1-203ENST00000435823 SSH3Q8TE77 659 aa14.18□□□□□ -0.14
COL28A1-203ENST00000435823 MXD3Q9BW11 206 aa14.18□□□□□ -0.14
COL28A1-203ENST00000435823 AKAP2Q9Y2D5 859 aa14.18□□□□□ -0.14
COL28A1-203ENST00000435823 ZNF646O15015 1829 aaPredicted RBP14.18□□□□□ -0.14
COL28A1-203ENST00000435823 FAM205AQ6ZU69 1335 aa14.17□□□□□ -0.14
COL28A1-203ENST00000435823 OS9Q13438 667 aaPredicted RBP14.17□□□□□ -0.14
COL28A1-203ENST00000435823 CEP85Q6P2H3 762 aa14.17□□□□□ -0.14
COL28A1-203ENST00000435823 MYOZ2Q9NPC6 264 aa14.17□□□□□ -0.14
COL28A1-203ENST00000435823 PGAP2Q9UHJ9 254 aa14.17□□□□□ -0.14
COL28A1-203ENST00000435823 JAG2Q9Y219 1238 aa14.17□□□□□ -0.14
COL28A1-203ENST00000435823 SURF6O75683 361 aaKnown RBP14.16□□□□□ -0.14
COL28A1-203ENST00000435823 ITGBL1O95965 494 aaPredicted RBP14.16□□□□□ -0.14
COL28A1-203ENST00000435823 EGFRP00533 1210 aa14.16□□□□□ -0.14
COL28A1-203ENST00000435823 BCAMP50895 628 aa14.16□□□□□ -0.14
COL28A1-203ENST00000435823 TFCP2Q12800 502 aa14.16□□□□□ -0.14
COL28A1-203ENST00000435823 C20orf194Q5TEA3 1177 aa14.16□□□□□ -0.14
COL28A1-203ENST00000435823 KIAA0825Q8IV33 1275 aa14.16□□□□□ -0.14
COL28A1-203ENST00000435823 DCPSQ96C86 337 aaKnown RBP14.16□□□□□ -0.14
COL28A1-203ENST00000435823 GNL3LQ9NVN8 582 aaKnown RBP14.16□□□□□ -0.14
COL28A1-203ENST00000435823 IQSEC3Q9UPP2 1182 aaPredicted RBP14.16□□□□□ -0.14
COL28A1-203ENST00000435823 PASKQ96RG2 1323 aa14.15□□□□□ -0.14
COL28A1-203ENST00000435823 RRP1P56182 461 aaKnown RBP14.15□□□□□ -0.14
COL28A1-203ENST00000435823 CHAF1AQ13111 956 aaPredicted RBP14.15□□□□□ -0.14
COL28A1-203ENST00000435823 MFSD14BQ5SR56 506 aa14.15□□□□□ -0.14
COL28A1-203ENST00000435823 CDC37L1Q7L3B6 337 aa14.15□□□□□ -0.14
COL28A1-203ENST00000435823 CERS5Q8N5B7 392 aa14.15□□□□□ -0.14
COL28A1-203ENST00000435823 TBC1D22AQ8WUA7 517 aa14.15□□□□□ -0.14
COL28A1-203ENST00000435823 ZBTB40Q9NUA8 1239 aa14.15□□□□□ -0.14
COL28A1-203ENST00000435823 A0A1B0GUL7 405 aa14.14□□□□□ -0.15
COL28A1-203ENST00000435823 F8W031 263 aaPredicted RBP14.14□□□□□ -0.15
COL28A1-203ENST00000435823 HMMRO75330 724 aa14.14□□□□□ -0.15
COL28A1-203ENST00000435823 SCARF1Q14162 830 aa14.14□□□□□ -0.15
COL28A1-203ENST00000435823 RPAP2Q8IXW5 612 aaPredicted RBP14.14□□□□□ -0.15
COL28A1-203ENST00000435823 ARAP2Q8WZ64 1704 aa14.13□□□□□ -0.15
COL28A1-203ENST00000435823 TMEM88BA6NKF7 163 aa14.13□□□□□ -0.15
COL28A1-203ENST00000435823 TIMM10P62072 90 aa14.13□□□□□ -0.15
COL28A1-203ENST00000435823 NEUROD6Q96NK8 337 aa14.13□□□□□ -0.15
COL28A1-203ENST00000435823 GLIS2Q9BZE0 524 aaPredicted RBP14.13□□□□□ -0.15
COL28A1-203ENST00000435823 CREBZFQ9NS37 354 aa14.13□□□□□ -0.15
COL28A1-203ENST00000435823 GGA3Q9NZ52 723 aa14.13□□□□□ -0.15
COL28A1-203ENST00000435823 NOP58Q9Y2X3 529 aaKnown RBP14.13□□□□□ -0.15
COL28A1-203ENST00000435823 MYH13Q9UKX3 1938 aa14.12□□□□□ -0.15
COL28A1-203ENST00000435823 TRAF5O00463 557 aa14.12□□□□□ -0.15
COL28A1-203ENST00000435823 SEMA3EO15041 775 aa14.12□□□□□ -0.15
COL28A1-203ENST00000435823 ADORA1P30542 326 aa14.12□□□□□ -0.15
COL28A1-203ENST00000435823 HTRA3P83110 453 aa14.12□□□□□ -0.15
COL28A1-203ENST00000435823 DLGAP5Q15398 846 aa14.12□□□□□ -0.15
COL28A1-203ENST00000435823 HSP90AB4PQ58FF6 505 aa14.12□□□□□ -0.15
COL28A1-203ENST00000435823 GORABQ5T7V8 394 aa14.12□□□□□ -0.15
COL28A1-203ENST00000435823 ANGEL2Q5VTE6 544 aaKnown RBP14.12□□□□□ -0.15
COL28A1-203ENST00000435823 KRT26Q7Z3Y9 468 aa14.12□□□□□ -0.15
COL28A1-203ENST00000435823 ERC1Q8IUD2 1116 aa14.12□□□□□ -0.15
COL28A1-203ENST00000435823 SULF1Q8IWU6 871 aa14.12□□□□□ -0.15
COL28A1-203ENST00000435823 WDR66Q8TBY9 1149 aa14.12□□□□□ -0.15
COL28A1-203ENST00000435823 XAGE2Q96GT9 111 aa14.12□□□□□ -0.15
COL28A1-203ENST00000435823 GPR108Q9NPR9 543 aa14.12□□□□□ -0.15
COL28A1-203ENST00000435823 TTF2Q9UNY4 1162 aaKnown RBP14.12□□□□□ -0.15
COL28A1-203ENST00000435823 PITPNM2Q9BZ72 1349 aa14.12□□□□□ -0.15
COL28A1-203ENST00000435823 WNT10BO00744 389 aa14.11□□□□□ -0.15
COL28A1-203ENST00000435823 PHKA1P46020 1223 aa14.11□□□□□ -0.15
COL28A1-203ENST00000435823 RBM5P52756 815 aaKnown RBP eCLIP14.11□□□□□ -0.15
COL28A1-203ENST00000435823 NBPF9Q3BBW0 867 aa14.11□□□□□ -0.15
COL28A1-203ENST00000435823 CCDC102BQ68D86 513 aa14.11□□□□□ -0.15
COL28A1-203ENST00000435823 USP48Q86UV5 1035 aa14.11□□□□□ -0.15
COL28A1-203ENST00000435823 DENND2AQ9ULE3 1009 aa14.11□□□□□ -0.15
COL28A1-203ENST00000435823 TRPM7Q96QT4 1865 aa14.1□□□□□ -0.15
COL28A1-203ENST00000435823 MYO1BO43795 1136 aa14.1□□□□□ -0.15
COL28A1-203ENST00000435823 CFAP100Q494V2 611 aa14.1□□□□□ -0.15
COL28A1-203ENST00000435823 MTMR14Q8NCE2 650 aa14.1□□□□□ -0.15
COL28A1-203ENST00000435823 SERPINA10Q9UK55 444 aa14.1□□□□□ -0.15
COL28A1-203ENST00000435823 EXOC6BQ9Y2D4 811 aa14.1□□□□□ -0.15
COL28A1-203ENST00000435823 SUGT1Q9Y2Z0 365 aa14.1□□□□□ -0.15
COL28A1-203ENST00000435823 MAST3O60307 1309 aa14.1□□□□□ -0.15
COL28A1-203ENST00000435823 ASTN2O75129 1339 aaPredicted RBP14.1□□□□□ -0.15
COL28A1-203ENST00000435823 ZBTB22O15209 634 aa14.09□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms