RNA–Protein interactions for RNA: ENST00000418628.5

PTCD3-204, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 532 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-204ENST00000418628 USP50Q70EL3 339 aaPredicted RBP23.06■■□□□ 1.28
PTCD3-204ENST00000418628 SUPT16HQ9Y5B9 1047 aaKnown RBP23.06■■□□□ 1.28
PTCD3-204ENST00000418628 LDHDQ86WU2 507 aa23.05■■□□□ 1.28
PTCD3-204ENST00000418628 C16orf71Q8IYS4 520 aaPredicted RBP23.05■■□□□ 1.28
PTCD3-204ENST00000418628 TRPM4Q8TD43 1214 aa23.05■■□□□ 1.28
PTCD3-204ENST00000418628 EXOC6BQ9Y2D4 811 aa23.05■■□□□ 1.28
PTCD3-204ENST00000418628 EGFRP00533 1210 aa23.04■■□□□ 1.28
PTCD3-204ENST00000418628 C1QTNF8P60827 252 aa23.04■■□□□ 1.28
PTCD3-204ENST00000418628 TNNI3KQ59H18 835 aa23.04■■□□□ 1.28
PTCD3-204ENST00000418628 XAGE2Q96GT9 111 aa23.04■■□□□ 1.28
PTCD3-204ENST00000418628 PCDHB15Q9Y5E8 787 aa23.04■■□□□ 1.28
PTCD3-204ENST00000418628 FPGT-TNNI3KV9GXZ4 949 aa23.04■■□□□ 1.28
PTCD3-204ENST00000418628 CDK5RAP2Q96SN8 1893 aa23.03■■□□□ 1.28
PTCD3-204ENST00000418628 PHKA1P46020 1223 aa23.03■■□□□ 1.28
PTCD3-204ENST00000418628 MMP14P50281 582 aa23.03■■□□□ 1.28
PTCD3-204ENST00000418628 HIRAP54198 1017 aaPredicted RBP23.03■■□□□ 1.28
PTCD3-204ENST00000418628 TIMM10P62072 90 aa23.03■■□□□ 1.28
PTCD3-204ENST00000418628 FSTL1Q12841 308 aa23.03■■□□□ 1.28
PTCD3-204ENST00000418628 AAMPQ13685 434 aa23.03■■□□□ 1.28
PTCD3-204ENST00000418628 VPS37DQ86XT2 251 aa23.03■■□□□ 1.28
PTCD3-204ENST00000418628 ERC1Q8IUD2 1116 aa23.03■■□□□ 1.28
PTCD3-204ENST00000418628 SMC1BQ8NDV3 1235 aa23.03■■□□□ 1.28
PTCD3-204ENST00000418628 PDS5AQ29RF7 1337 aaKnown RBP23.03■■□□□ 1.28
PTCD3-204ENST00000418628 USP17L8P0C7I0 530 aa23.02■■□□□ 1.28
PTCD3-204ENST00000418628 HSP90AB4PQ58FF6 505 aa23.02■■□□□ 1.28
PTCD3-204ENST00000418628 CCDC102BQ68D86 513 aa23.02■■□□□ 1.28
PTCD3-204ENST00000418628 PGAP2Q9UHJ9 254 aa23.02■■□□□ 1.28
PTCD3-204ENST00000418628 IQSEC3Q9UPP2 1182 aaPredicted RBP23.02■■□□□ 1.28
PTCD3-204ENST00000418628 H7C1D1 291 aa23.01■■□□□ 1.27
PTCD3-204ENST00000418628 SEMA3EO15041 775 aa23.01■■□□□ 1.27
PTCD3-204ENST00000418628 OS9Q13438 667 aaPredicted RBP23.01■■□□□ 1.27
PTCD3-204ENST00000418628 CHADLQ6NUI6 762 aa23.01■■□□□ 1.27
PTCD3-204ENST00000418628 FBXW7Q969H0 707 aa23.01■■□□□ 1.27
PTCD3-204ENST00000418628 EAPPQ56P03 285 aaPredicted RBP23■■□□□ 1.27
PTCD3-204ENST00000418628 MFSD14BQ5SR56 506 aa23■■□□□ 1.27
PTCD3-204ENST00000418628 SAMD7Q7Z3H4 446 aa23■■□□□ 1.27
PTCD3-204ENST00000418628 RHPN1Q8TCX5 695 aa23■■□□□ 1.27
PTCD3-204ENST00000418628 ZBED3Q96IU2 234 aaPredicted RBP23■■□□□ 1.27
PTCD3-204ENST00000418628 JAG2Q9Y219 1238 aa23■■□□□ 1.27
PTCD3-204ENST00000418628 FOCADQ5VW36 1801 aa22.99■■□□□ 1.27
PTCD3-204ENST00000418628 ARID4AP29374 1257 aaPredicted RBP22.99■■□□□ 1.27
PTCD3-204ENST00000418628 KIF4BQ2VIQ3 1234 aa22.99■■□□□ 1.27
PTCD3-204ENST00000418628 ZC3H15Q8WU90 426 aaKnown RBP22.99■■□□□ 1.27
PTCD3-204ENST00000418628 TBC1D22AQ8WUA7 517 aa22.99■■□□□ 1.27
PTCD3-204ENST00000418628 EAF2Q96CJ1 260 aaPredicted RBP22.99■■□□□ 1.27
PTCD3-204ENST00000418628 SALL1Q9NSC2 1324 aa22.99■■□□□ 1.27
PTCD3-204ENST00000418628 RAB11FIP3O75154 756 aa22.98■■□□□ 1.27
PTCD3-204ENST00000418628 RASGRF1Q13972 1273 aa22.98■■□□□ 1.27
PTCD3-204ENST00000418628 KIAA0825Q8IV33 1275 aa22.98■■□□□ 1.27
PTCD3-204ENST00000418628 KIF1BPQ96EK5 621 aa22.98■■□□□ 1.27
PTCD3-204ENST00000418628 MYOZ2Q9NPC6 264 aa22.98■■□□□ 1.27
PTCD3-204ENST00000418628 DBNLQ9UJU6 430 aaKnown RBP22.98■■□□□ 1.27
PTCD3-204ENST00000418628 PASKQ96RG2 1323 aa22.98■■□□□ 1.27
PTCD3-204ENST00000418628 GRIK5Q16478 980 aa22.97■■□□□ 1.27
PTCD3-204ENST00000418628 TBC1D10BQ4KMP7 808 aaPredicted RBP22.97■■□□□ 1.27
PTCD3-204ENST00000418628 MTMR14Q8NCE2 650 aa22.97■■□□□ 1.27
PTCD3-204ENST00000418628 DBNDD2Q9BQY9 259 aa22.97■■□□□ 1.27
PTCD3-204ENST00000418628 DCTPP1Q9H773 170 aa22.97■■□□□ 1.27
PTCD3-204ENST00000418628 GNL3LQ9NVN8 582 aaKnown RBP22.97■■□□□ 1.27
PTCD3-204ENST00000418628 ITGBL1O95965 494 aaPredicted RBP22.96■■□□□ 1.27
PTCD3-204ENST00000418628 EXOC6Q8TAG9 804 aa22.96■■□□□ 1.27
PTCD3-204ENST00000418628 NEUROD6Q96NK8 337 aa22.96■■□□□ 1.27
PTCD3-204ENST00000418628 TLR7Q9NYK1 1049 aaKnown RBP22.96■■□□□ 1.27
PTCD3-204ENST00000418628 DENND2AQ9ULE3 1009 aa22.96■■□□□ 1.27
PTCD3-204ENST00000418628 SUGT1Q9Y2Z0 365 aa22.96■■□□□ 1.27
PTCD3-204ENST00000418628 CHAF1AQ13111 956 aaPredicted RBP22.95■■□□□ 1.26
PTCD3-204ENST00000418628 WDR66Q8TBY9 1149 aa22.95■■□□□ 1.26
PTCD3-204ENST00000418628 ZNF512BQ96KM6 892 aaPredicted RBP22.95■■□□□ 1.26
PTCD3-204ENST00000418628 OGFOD1Q8N543 542 aa22.94■■□□□ 1.26
PTCD3-204ENST00000418628 PITPNM2Q9BZ72 1349 aa22.93■■□□□ 1.26
PTCD3-204ENST00000418628 WNT10BO00744 389 aa22.93■■□□□ 1.26
PTCD3-204ENST00000418628 FRAT2O75474 233 aaPredicted RBP22.93■■□□□ 1.26
PTCD3-204ENST00000418628 MCAMP43121 646 aa22.93■■□□□ 1.26
PTCD3-204ENST00000418628 HDAC1Q13547 482 aaPredicted RBP22.93■■□□□ 1.26
PTCD3-204ENST00000418628 SCARF1Q14162 830 aa22.93■■□□□ 1.26
PTCD3-204ENST00000418628 MAP1SQ66K74 1059 aaPredicted RBP22.93■■□□□ 1.26
PTCD3-204ENST00000418628 IL1RAPL2Q9NP60 686 aa22.93■■□□□ 1.26
PTCD3-204ENST00000418628 HDAC9Q9UKV0 1011 aa22.93■■□□□ 1.26
PTCD3-204ENST00000418628 PAPPA2Q9BXP8 1791 aa22.92■■□□□ 1.26
PTCD3-204ENST00000418628 ASTN2O75129 1339 aaPredicted RBP22.92■■□□□ 1.26
PTCD3-204ENST00000418628 HMG20BQ9P0W2 317 aa22.92■■□□□ 1.26
PTCD3-204ENST00000418628 UQCRFS1P1P0C7P4 283 aa22.91■■□□□ 1.26
PTCD3-204ENST00000418628 HDLBPQ00341 1268 aaKnown RBP22.91■■□□□ 1.26
PTCD3-204ENST00000418628 NBPF9Q3BBW0 867 aa22.91■■□□□ 1.26
PTCD3-204ENST00000418628 AACSQ86V21 672 aa22.91■■□□□ 1.26
PTCD3-204ENST00000418628 CNTROBQ8N137 903 aa22.91■■□□□ 1.26
PTCD3-204ENST00000418628 CCDC8Q9H0W5 538 aaPredicted RBP22.91■■□□□ 1.26
PTCD3-204ENST00000418628 SERPINA10Q9UK55 444 aa22.91■■□□□ 1.26
PTCD3-204ENST00000418628 TTF2Q9UNY4 1162 aaKnown RBP22.91■■□□□ 1.26
PTCD3-204ENST00000418628 CLEC11AQ9Y240 323 aa22.91■■□□□ 1.26
PTCD3-204ENST00000418628 MAST3O60307 1309 aa22.9■■□□□ 1.26
PTCD3-204ENST00000418628 SPDYE2BA6NHP3 402 aa22.9■■□□□ 1.26
PTCD3-204ENST00000418628 F8W031 263 aaPredicted RBP22.9■■□□□ 1.26
PTCD3-204ENST00000418628 SPDYE6P0CI01 402 aa22.9■■□□□ 1.26
PTCD3-204ENST00000418628 HSPA6P17066 643 aa22.9■■□□□ 1.26
PTCD3-204ENST00000418628 RBM26Q5T8P6 1007 aaKnown RBP22.9■■□□□ 1.26
PTCD3-204ENST00000418628 PI16Q6UXB8 463 aa22.9■■□□□ 1.26
PTCD3-204ENST00000418628 CLASRPQ8N2M8 674 aaKnown RBP22.9■■□□□ 1.26
PTCD3-204ENST00000418628 MRIQ9BWK5 157 aa22.9■■□□□ 1.26
PTCD3-204ENST00000418628 LRRCC1Q9C099 1032 aa22.9■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms