RNA–Protein interactions for RNA: ENST00000404909.5

RTN4-208, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,102 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-208ENST00000404909 RAD50Q92878 1312 aa4.46□□□□□ -1.7
RTN4-208ENST00000404909 ZNF532Q9HCE3 1301 aa4.46□□□□□ -1.7
RTN4-208ENST00000404909 G3V3G9 751 aa4.45□□□□□ -1.7
RTN4-208ENST00000404909 M0R2C6 588 aa4.45□□□□□ -1.7
RTN4-208ENST00000404909 ZFYP08048 801 aaPredicted RBP4.45□□□□□ -1.7
RTN4-208ENST00000404909 PDE6AP16499 860 aa4.45□□□□□ -1.7
RTN4-208ENST00000404909 ZMYM1Q5SVZ6 1142 aa4.45□□□□□ -1.7
RTN4-208ENST00000404909 DCAF8Q5TAQ9 597 aa4.45□□□□□ -1.7
RTN4-208ENST00000404909 STYK1Q6J9G0 422 aa4.45□□□□□ -1.7
RTN4-208ENST00000404909 ZSCAN25Q6NSZ9 544 aa4.45□□□□□ -1.7
RTN4-208ENST00000404909 FBXW7Q969H0 707 aa4.45□□□□□ -1.7
RTN4-208ENST00000404909 ZC3H12CQ9C0D7 883 aaKnown RBP4.45□□□□□ -1.7
RTN4-208ENST00000404909 PUS7LQ9H0K6 701 aaKnown RBP4.45□□□□□ -1.7
RTN4-208ENST00000404909 HELLSQ9NRZ9 838 aa4.45□□□□□ -1.7
RTN4-208ENST00000404909 MAST3O60307 1309 aa4.45□□□□□ -1.7
RTN4-208ENST00000404909 C21orf2O43822 256 aa4.45□□□□□ -1.7
RTN4-208ENST00000404909 DPEP1P16444 411 aa4.45□□□□□ -1.7
RTN4-208ENST00000404909 VPS53Q5VIR6 699 aa4.45□□□□□ -1.7
RTN4-208ENST00000404909 KIF2CQ99661 725 aa4.45□□□□□ -1.7
RTN4-208ENST00000404909 PODXL2Q9NZ53 605 aa4.45□□□□□ -1.7
RTN4-208ENST00000404909 RBM8AQ9Y5S9 174 aaKnown RBP4.45□□□□□ -1.7
RTN4-208ENST00000404909 ANKRD31Q8N7Z5 1873 aa4.45□□□□□ -1.7
RTN4-208ENST00000404909 APPP05067 770 aa4.45□□□□□ -1.7
RTN4-208ENST00000404909 ADD2P35612 726 aa4.45□□□□□ -1.7
RTN4-208ENST00000404909 BECN1Q14457 450 aa4.45□□□□□ -1.7
RTN4-208ENST00000404909 DOK7Q18PE1 504 aa4.45□□□□□ -1.7
RTN4-208ENST00000404909 TTLL6Q8N841 843 aa4.45□□□□□ -1.7
RTN4-208ENST00000404909 MIGA1Q8NAN2 632 aa4.45□□□□□ -1.7
RTN4-208ENST00000404909 SPRYD3Q8NCJ5 442 aa4.45□□□□□ -1.7
RTN4-208ENST00000404909 APPBP2Q92624 585 aa4.45□□□□□ -1.7
RTN4-208ENST00000404909 AIDAQ96BJ3 306 aa4.45□□□□□ -1.7
RTN4-208ENST00000404909 RFX7Q2KHR2 1363 aa4.45□□□□□ -1.7
RTN4-208ENST00000404909 MED23Q9ULK4 1368 aa4.45□□□□□ -1.7
RTN4-208ENST00000404909 GPAA1O43292 621 aa4.44□□□□□ -1.7
RTN4-208ENST00000404909 HSPA4P34932 840 aa4.44□□□□□ -1.7
RTN4-208ENST00000404909 RASEFQ8IZ41 740 aa4.44□□□□□ -1.7
RTN4-208ENST00000404909 MAP4K1Q92918 833 aa4.44□□□□□ -1.7
RTN4-208ENST00000404909 UPF3BQ9BZI7 483 aaKnown RBP4.44□□□□□ -1.7
RTN4-208ENST00000404909 CD209Q9NNX6 404 aa4.44□□□□□ -1.7
RTN4-208ENST00000404909 SEMA3EO15041 775 aa4.44□□□□□ -1.7
RTN4-208ENST00000404909 ZKSCAN1P17029 563 aaPredicted RBP4.44□□□□□ -1.7
RTN4-208ENST00000404909 CYP7A1P22680 504 aa4.44□□□□□ -1.7
RTN4-208ENST00000404909 PRDX5P30044 214 aa4.44□□□□□ -1.7
RTN4-208ENST00000404909 NEK4P51957 841 aa4.44□□□□□ -1.7
RTN4-208ENST00000404909 RABEP1Q15276 862 aa4.44□□□□□ -1.7
RTN4-208ENST00000404909 UBE3CQ15386 1083 aa4.44□□□□□ -1.7
RTN4-208ENST00000404909 ILDR2Q71H61 639 aa4.44□□□□□ -1.7
RTN4-208ENST00000404909 ERICH6Q7L0X2 663 aa4.44□□□□□ -1.7
RTN4-208ENST00000404909 HSCBQ8IWL3 235 aa4.44□□□□□ -1.7
RTN4-208ENST00000404909 TBC1D2Q9BYX2 928 aa4.44□□□□□ -1.7
RTN4-208ENST00000404909 NRXN2Q9P2S2 1712 aa4.44□□□□□ -1.7
RTN4-208ENST00000404909 IRS2Q9Y4H2 1338 aa4.44□□□□□ -1.7
RTN4-208ENST00000404909 COL1A1P02452 1464 aaPredicted RBP4.44□□□□□ -1.7
RTN4-208ENST00000404909 AKAP11Q9UKA4 1901 aa4.44□□□□□ -1.7
RTN4-208ENST00000404909 MBD4O95243 580 aa4.44□□□□□ -1.7
RTN4-208ENST00000404909 HSPD1P10809 573 aaKnown RBP4.44□□□□□ -1.7
RTN4-208ENST00000404909 CREB3L3Q68CJ9 461 aa4.44□□□□□ -1.7
RTN4-208ENST00000404909 NOL8Q76FK4 1167 aaKnown RBP4.44□□□□□ -1.7
RTN4-208ENST00000404909 DZIP1Q86YF9 867 aaKnown RBP4.44□□□□□ -1.7
RTN4-208ENST00000404909 TDRD7Q8NHU6 1098 aaKnown RBP4.44□□□□□ -1.7
RTN4-208ENST00000404909 ARMT1Q9H993 441 aa4.44□□□□□ -1.7
RTN4-208ENST00000404909 DBNDD1Q9H9R9 158 aa4.44□□□□□ -1.7
RTN4-208ENST00000404909 SNX14Q9Y5W7 946 aa4.44□□□□□ -1.7
RTN4-208ENST00000404909 C10orf71Q711Q0 1435 aa4.44□□□□□ -1.7
RTN4-208ENST00000404909 TCRBV5S4A2TA0A5A2 114 aa4.44□□□□□ -1.7
RTN4-208ENST00000404909 CD2BP2O95400 341 aaKnown RBP4.44□□□□□ -1.7
RTN4-208ENST00000404909 GTF2IP78347 998 aa4.44□□□□□ -1.7
RTN4-208ENST00000404909 RNF20Q5VTR2 975 aa4.44□□□□□ -1.7
RTN4-208ENST00000404909 NAA16Q6N069 864 aaPredicted RBP4.44□□□□□ -1.7
RTN4-208ENST00000404909 WDR66Q8TBY9 1149 aa4.44□□□□□ -1.7
RTN4-208ENST00000404909 SLC27A2O14975 620 aa4.43□□□□□ -1.7
RTN4-208ENST00000404909 EPB41L2O43491 1005 aaKnown RBP4.43□□□□□ -1.7
RTN4-208ENST00000404909 ST18O60284 1047 aa4.43□□□□□ -1.7
RTN4-208ENST00000404909 LDHBP07195 334 aaKnown RBP4.43□□□□□ -1.7
RTN4-208ENST00000404909 CPA1P15085 419 aa4.43□□□□□ -1.7
RTN4-208ENST00000404909 CASTP20810 708 aaKnown RBP4.43□□□□□ -1.7
RTN4-208ENST00000404909 KCNA3P22001 575 aa4.43□□□□□ -1.7
RTN4-208ENST00000404909 ANAPC15P60006 121 aa4.43□□□□□ -1.7
RTN4-208ENST00000404909 HAND2P61296 217 aa4.43□□□□□ -1.7
RTN4-208ENST00000404909 MECOMQ03112 1051 aa4.43□□□□□ -1.7
RTN4-208ENST00000404909 NECTIN1Q15223 517 aa4.43□□□□□ -1.7
RTN4-208ENST00000404909 MFSD14BQ5SR56 506 aa4.43□□□□□ -1.7
RTN4-208ENST00000404909 TTLL5Q6EMB2 1281 aa4.43□□□□□ -1.7
RTN4-208ENST00000404909 C15orf52Q6ZUT6 534 aaKnown RBP4.43□□□□□ -1.7
RTN4-208ENST00000404909 ADGRA1Q86SQ6 560 aa4.43□□□□□ -1.7
RTN4-208ENST00000404909 TICAM2Q86XR7 235 aa4.43□□□□□ -1.7
RTN4-208ENST00000404909 JAKMIP1Q96N16 626 aaKnown RBP4.43□□□□□ -1.7
RTN4-208ENST00000404909 EYA3Q99504 573 aa4.43□□□□□ -1.7
RTN4-208ENST00000404909 PIM2Q9P1W9 311 aa4.43□□□□□ -1.7
RTN4-208ENST00000404909 TAF6LQ9Y6J9 622 aa4.43□□□□□ -1.7
RTN4-208ENST00000404909 U3KPZ7 1027 aaPredicted RBP4.43□□□□□ -1.7
RTN4-208ENST00000404909 COL11A2P13942 1736 aaPredicted RBP4.43□□□□□ -1.7
RTN4-208ENST00000404909 QSER1Q2KHR3 1735 aa4.43□□□□□ -1.7
RTN4-208ENST00000404909 F8W031 263 aaPredicted RBP4.43□□□□□ -1.7
RTN4-208ENST00000404909 HSP90AA1P07900 732 aaKnown RBP4.43□□□□□ -1.7
RTN4-208ENST00000404909 AOC3Q16853 763 aa4.43□□□□□ -1.7
RTN4-208ENST00000404909 ADCK5Q3MIX3 580 aa4.43□□□□□ -1.7
RTN4-208ENST00000404909 SPTY2D1Q68D10 685 aaPredicted RBP4.43□□□□□ -1.7
RTN4-208ENST00000404909 C7orf43Q8WVR3 580 aa4.43□□□□□ -1.7
RTN4-208ENST00000404909 NSUN4Q96CB9 384 aaKnown RBP4.43□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms