RNA–Protein interactions for RNA: ENST00000396828.8

NEDD8-202, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 626 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-202ENST00000396828 FKBP1BP68106 108 aa13.1□□□□□ -0.31
NEDD8-202ENST00000396828 MLLT1Q03111 559 aaPredicted RBP13.1□□□□□ -0.31
NEDD8-202ENST00000396828 LMBR1LQ6UX01 489 aa13.1□□□□□ -0.31
NEDD8-202ENST00000396828 CHMP3Q9Y3E7 222 aa13.1□□□□□ -0.31
NEDD8-202ENST00000396828 F8W031 263 aaPredicted RBP13.09□□□□□ -0.31
NEDD8-202ENST00000396828 TBC1D8O95759 1140 aa13.09□□□□□ -0.31
NEDD8-202ENST00000396828 PTPN12Q05209 780 aaKnown RBP13.09□□□□□ -0.31
NEDD8-202ENST00000396828 IFIT5Q13325 482 aaKnown RBP13.09□□□□□ -0.31
NEDD8-202ENST00000396828 TTLL12Q14166 644 aaPredicted RBP13.09□□□□□ -0.31
NEDD8-202ENST00000396828 KAZALD1Q96I82 304 aa13.09□□□□□ -0.31
NEDD8-202ENST00000396828 E9PSI1 815 aa13.08□□□□□ -0.32
NEDD8-202ENST00000396828 GRM8O00222 908 aa13.08□□□□□ -0.32
NEDD8-202ENST00000396828 PLIN1O60240 522 aa13.08□□□□□ -0.32
NEDD8-202ENST00000396828 C15orf52Q6ZUT6 534 aaKnown RBP13.08□□□□□ -0.32
NEDD8-202ENST00000396828 R3HDMLQ9H3Y0 253 aa13.08□□□□□ -0.32
NEDD8-202ENST00000396828 BRCA2P51587 3418 aa13.07□□□□□ -0.32
NEDD8-202ENST00000396828 SSC5DA1L4H1 1573 aa13.07□□□□□ -0.32
NEDD8-202ENST00000396828 MKI67P46013 3256 aaKnown RBP13.07□□□□□ -0.32
NEDD8-202ENST00000396828 IL1R1P14778 569 aa13.07□□□□□ -0.32
NEDD8-202ENST00000396828 PRMT6Q96LA8 375 aaPredicted RBP13.07□□□□□ -0.32
NEDD8-202ENST00000396828 PUS3Q9BZE2 481 aaKnown RBP13.07□□□□□ -0.32
NEDD8-202ENST00000396828 CLRN2A0PK11 232 aa13.06□□□□□ -0.32
NEDD8-202ENST00000396828 NBPF7P0C2Y1 421 aaPredicted RBP13.06□□□□□ -0.32
NEDD8-202ENST00000396828 TM4SF4P48230 202 aa13.06□□□□□ -0.32
NEDD8-202ENST00000396828 SOX10P56693 466 aa13.06□□□□□ -0.32
NEDD8-202ENST00000396828 SLFN5Q08AF3 891 aa13.06□□□□□ -0.32
NEDD8-202ENST00000396828 LDLRAD1Q5T700 205 aa13.06□□□□□ -0.32
NEDD8-202ENST00000396828 SLC4A10Q6U841 1118 aa13.06□□□□□ -0.32
NEDD8-202ENST00000396828 LDHAL6AQ6ZMR3 332 aa13.06□□□□□ -0.32
NEDD8-202ENST00000396828 CDCA7LQ96GN5 454 aa13.06□□□□□ -0.32
NEDD8-202ENST00000396828 SUCLG2Q96I99 432 aa13.06□□□□□ -0.32
NEDD8-202ENST00000396828 DEFB129Q9H1M3 183 aa13.06□□□□□ -0.32
NEDD8-202ENST00000396828 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.06□□□□□ -0.32
NEDD8-202ENST00000396828 HDAC9Q9UKV0 1011 aa13.06□□□□□ -0.32
NEDD8-202ENST00000396828 ECM29Q5VYK3 1845 aa13.05□□□□□ -0.32
NEDD8-202ENST00000396828 DLGAP5Q15398 846 aa13.05□□□□□ -0.32
NEDD8-202ENST00000396828 CCDC57Q2TAC2 916 aa13.05□□□□□ -0.32
NEDD8-202ENST00000396828 CFAP100Q494V2 611 aa13.05□□□□□ -0.32
NEDD8-202ENST00000396828 CTU1Q7Z7A3 348 aaKnown RBP13.05□□□□□ -0.32
NEDD8-202ENST00000396828 APOBEC3FQ8IUX4 373 aaKnown RBP13.05□□□□□ -0.32
NEDD8-202ENST00000396828 REM2Q8IYK8 340 aaPredicted RBP13.05□□□□□ -0.32
NEDD8-202ENST00000396828 MTMR14Q8NCE2 650 aa13.05□□□□□ -0.32
NEDD8-202ENST00000396828 ZNF296Q8WUU4 475 aaPredicted RBP13.05□□□□□ -0.32
NEDD8-202ENST00000396828 CLMNQ96JQ2 1002 aa13.05□□□□□ -0.32
NEDD8-202ENST00000396828 ANGEL1Q9UNK9 670 aaKnown RBP13.05□□□□□ -0.32
NEDD8-202ENST00000396828 SPDYE2BA6NHP3 402 aa13.04□□□□□ -0.32
NEDD8-202ENST00000396828 SPDYE6P0CI01 402 aa13.04□□□□□ -0.32
NEDD8-202ENST00000396828 GYG1P46976 350 aa13.04□□□□□ -0.32
NEDD8-202ENST00000396828 MMP14P50281 582 aa13.04□□□□□ -0.32
NEDD8-202ENST00000396828 GRIK5Q16478 980 aa13.04□□□□□ -0.32
NEDD8-202ENST00000396828 ZNF804AQ7Z570 1209 aa13.04□□□□□ -0.32
NEDD8-202ENST00000396828 CNNM1Q9NRU3 951 aa13.04□□□□□ -0.32
NEDD8-202ENST00000396828 C9orf78Q9NZ63 289 aaPredicted RBP13.04□□□□□ -0.32
NEDD8-202ENST00000396828 ALDH1L1O75891 902 aa13.03□□□□□ -0.32
NEDD8-202ENST00000396828 NF2P35240 595 aa13.03□□□□□ -0.32
NEDD8-202ENST00000396828 TAF7LQ5H9L4 462 aa13.03□□□□□ -0.32
NEDD8-202ENST00000396828 NBPF12Q5TAG4 269 aaPredicted RBP13.03□□□□□ -0.32
NEDD8-202ENST00000396828 SPRYD7Q5W111 196 aa13.03□□□□□ -0.32
NEDD8-202ENST00000396828 ARMC9Q7Z3E5 817 aa13.03□□□□□ -0.32
NEDD8-202ENST00000396828 CDAN1Q8IWY9 1227 aa13.03□□□□□ -0.32
NEDD8-202ENST00000396828 FAM84BQ96KN1 310 aaPredicted RBP13.03□□□□□ -0.32
NEDD8-202ENST00000396828 SRCIN1Q9C0H9 1055 aa13.03□□□□□ -0.32
NEDD8-202ENST00000396828 GPR25O00155 361 aa13.02□□□□□ -0.33
NEDD8-202ENST00000396828 TRMT2AQ8IZ69 625 aaKnown RBP13.02□□□□□ -0.33
NEDD8-202ENST00000396828 MRPL50Q8N5N7 158 aaKnown RBP13.02□□□□□ -0.33
NEDD8-202ENST00000396828 TDRD7Q8NHU6 1098 aaKnown RBP13.02□□□□□ -0.33
NEDD8-202ENST00000396828 BICC1Q9H694 974 aaKnown RBP13.02□□□□□ -0.33
NEDD8-202ENST00000396828 VEZTQ9HBM0 779 aa13.02□□□□□ -0.33
NEDD8-202ENST00000396828 HPS5Q9UPZ3 1129 aa13.02□□□□□ -0.33
NEDD8-202ENST00000396828 RIPOR2Q9Y4F9 1068 aa13.02□□□□□ -0.33
NEDD8-202ENST00000396828 USP2O75604 605 aaPredicted RBP13.01□□□□□ -0.33
NEDD8-202ENST00000396828 GJA5P36382 358 aa13.01□□□□□ -0.33
NEDD8-202ENST00000396828 RBM5P52756 815 aaKnown RBP eCLIP13.01□□□□□ -0.33
NEDD8-202ENST00000396828 FKBP1AP62942 108 aaKnown RBP13.01□□□□□ -0.33
NEDD8-202ENST00000396828 RASA3Q14644 834 aa13.01□□□□□ -0.33
NEDD8-202ENST00000396828 MAP3K11Q16584 847 aa13.01□□□□□ -0.33
NEDD8-202ENST00000396828 LRRC24Q50LG9 513 aa13.01□□□□□ -0.33
NEDD8-202ENST00000396828 ANKRD44Q8N8A2 993 aa13.01□□□□□ -0.33
NEDD8-202ENST00000396828 KLHDC4Q8TBB5 520 aa13.01□□□□□ -0.33
NEDD8-202ENST00000396828 IQSEC3Q9UPP2 1182 aaPredicted RBP13.01□□□□□ -0.33
NEDD8-202ENST00000396828 UTYO14607 1347 aa13.01□□□□□ -0.33
NEDD8-202ENST00000396828 FAM205AQ6ZU69 1335 aa13.01□□□□□ -0.33
NEDD8-202ENST00000396828 COL1A1P02452 1464 aaPredicted RBP13□□□□□ -0.33
NEDD8-202ENST00000396828 HIBADHP31937 336 aaKnown RBP13□□□□□ -0.33
NEDD8-202ENST00000396828 UBE4AQ14139 1066 aa13□□□□□ -0.33
NEDD8-202ENST00000396828 MFSD14BQ5SR56 506 aa13□□□□□ -0.33
NEDD8-202ENST00000396828 SLC10A4Q96EP9 437 aa13□□□□□ -0.33
NEDD8-202ENST00000396828 WNK4Q96J92 1243 aa13□□□□□ -0.33
NEDD8-202ENST00000396828 TDRD3Q9H7E2 651 aaKnown RBP13□□□□□ -0.33
NEDD8-202ENST00000396828 TTF2Q9UNY4 1162 aaKnown RBP13□□□□□ -0.33
NEDD8-202ENST00000396828 PDE4DIPQ5VU43 2346 aa12.99□□□□□ -0.33
NEDD8-202ENST00000396828 IGF2BP3O00425 579 aaKnown RBP eCLIP12.99□□□□□ -0.33
NEDD8-202ENST00000396828 SREBF2Q12772 1141 aa12.99□□□□□ -0.33
NEDD8-202ENST00000396828 RABL6Q3YEC7 729 aaPredicted RBP12.99□□□□□ -0.33
NEDD8-202ENST00000396828 FBXO33Q7Z6M2 555 aa12.99□□□□□ -0.33
NEDD8-202ENST00000396828 SSH1Q8WYL5 1049 aa12.99□□□□□ -0.33
NEDD8-202ENST00000396828 ZNF70Q9UC06 446 aaPredicted RBP12.99□□□□□ -0.33
NEDD8-202ENST00000396828 OTOFQ9HC10 1997 aa12.99□□□□□ -0.33
NEDD8-202ENST00000396828 MYO1BO43795 1136 aa12.98□□□□□ -0.33
NEDD8-202ENST00000396828 CAP1Q01518 475 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms