RNA–Protein interactions for RNA: ENST00000395682.3

SHMT1-204, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 570 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-204ENST00000395682 HDAC9Q9UKV0 1011 aa29.44■■■□□ 2.3
SHMT1-204ENST00000395682 ZNF646O15015 1829 aaPredicted RBP29.43■■■□□ 2.3
SHMT1-204ENST00000395682 SLC5A1P13866 664 aa29.43■■■□□ 2.3
SHMT1-204ENST00000395682 BCAMP50895 628 aa29.43■■■□□ 2.3
SHMT1-204ENST00000395682 FKBP1AP62942 108 aaKnown RBP29.43■■■□□ 2.3
SHMT1-204ENST00000395682 LPIN2Q92539 896 aa29.43■■■□□ 2.3
SHMT1-204ENST00000395682 GGA3Q9NZ52 723 aa29.43■■■□□ 2.3
SHMT1-204ENST00000395682 FAM205AQ6ZU69 1335 aa29.43■■■□□ 2.3
SHMT1-204ENST00000395682 CELF2O95319 508 aaKnown RBP29.42■■■□□ 2.3
SHMT1-204ENST00000395682 MS4A1P11836 297 aa29.42■■■□□ 2.3
SHMT1-204ENST00000395682 ANGEL2Q5VTE6 544 aaKnown RBP29.42■■■□□ 2.3
SHMT1-204ENST00000395682 DLK2Q6UY11 383 aa29.42■■■□□ 2.3
SHMT1-204ENST00000395682 ABT1Q9ULW3 272 aaKnown RBP29.42■■■□□ 2.3
SHMT1-204ENST00000395682 IQSEC3Q9UPP2 1182 aaPredicted RBP29.42■■■□□ 2.3
SHMT1-204ENST00000395682 NBPF9Q3BBW0 867 aa29.41■■■□□ 2.3
SHMT1-204ENST00000395682 PNMA6EA0A0J9YXQ4 647 aa29.4■■■□□ 2.3
SHMT1-204ENST00000395682 F8W031 263 aaPredicted RBP29.4■■■□□ 2.3
SHMT1-204ENST00000395682 FRAT2O75474 233 aaPredicted RBP29.4■■■□□ 2.3
SHMT1-204ENST00000395682 ATP2B3Q16720 1220 aa29.4■■■□□ 2.3
SHMT1-204ENST00000395682 SULF1Q8IWU6 871 aa29.4■■■□□ 2.3
SHMT1-204ENST00000395682 ZNF408Q9H9D4 720 aa29.4■■■□□ 2.3
SHMT1-204ENST00000395682 POLR2AP24928 1970 aaKnown RBP29.39■■■□□ 2.3
SHMT1-204ENST00000395682 ADM5C9JUS6 153 aa29.39■■■□□ 2.3
SHMT1-204ENST00000395682 MFSD14BQ5SR56 506 aa29.39■■■□□ 2.3
SHMT1-204ENST00000395682 JMYQ8N9B5 988 aa29.39■■■□□ 2.3
SHMT1-204ENST00000395682 C1orf115Q9H7X2 142 aa29.39■■■□□ 2.3
SHMT1-204ENST00000395682 WNT10BO00744 389 aa29.38■■■□□ 2.29
SHMT1-204ENST00000395682 ATP8B2P98198 1209 aa29.38■■■□□ 2.29
SHMT1-204ENST00000395682 CNTNAP1P78357 1384 aa29.38■■■□□ 2.29
SHMT1-204ENST00000395682 CHAF1AQ13111 956 aaPredicted RBP29.37■■■□□ 2.29
SHMT1-204ENST00000395682 DEFB115Q30KQ5 88 aa29.37■■■□□ 2.29
SHMT1-204ENST00000395682 TRPM7Q96QT4 1865 aa29.36■■■□□ 2.29
SHMT1-204ENST00000395682 RASSF10A6NK89 507 aa29.35■■■□□ 2.29
SHMT1-204ENST00000395682 TFCP2Q12800 502 aa29.35■■■□□ 2.29
SHMT1-204ENST00000395682 DLGAP5Q15398 846 aa29.35■■■□□ 2.29
SHMT1-204ENST00000395682 ZBED3Q96IU2 234 aaPredicted RBP29.35■■■□□ 2.29
SHMT1-204ENST00000395682 PITPNM2Q9BZ72 1349 aa29.35■■■□□ 2.29
SHMT1-204ENST00000395682 G3BP1Q13283 466 aaKnown RBP eCLIP29.34■■■□□ 2.29
SHMT1-204ENST00000395682 POLA2Q14181 598 aa29.34■■■□□ 2.29
SHMT1-204ENST00000395682 SCAF8Q9UPN6 1271 aaKnown RBP29.34■■■□□ 2.29
SHMT1-204ENST00000395682 TLL2Q9Y6L7 1015 aa29.34■■■□□ 2.29
SHMT1-204ENST00000395682 VEGFBP49765 207 aa29.33■■■□□ 2.29
SHMT1-204ENST00000395682 TIMM10P62072 90 aa29.33■■■□□ 2.29
SHMT1-204ENST00000395682 MTMR14Q8NCE2 650 aa29.33■■■□□ 2.29
SHMT1-204ENST00000395682 SSH3Q8TE77 659 aa29.33■■■□□ 2.29
SHMT1-204ENST00000395682 YTHDC1Q96MU7 727 aaKnown RBP29.33■■■□□ 2.29
SHMT1-204ENST00000395682 TTF2Q9UNY4 1162 aaKnown RBP29.33■■■□□ 2.29
SHMT1-204ENST00000395682 CFAP100Q494V2 611 aa29.32■■■□□ 2.28
SHMT1-204ENST00000395682 TBC1D22AQ8WUA7 517 aa29.32■■■□□ 2.28
SHMT1-204ENST00000395682 GNL3LQ9NVN8 582 aaKnown RBP29.32■■■□□ 2.28
SHMT1-204ENST00000395682 AKAP2Q9Y2D5 859 aa29.32■■■□□ 2.28
SHMT1-204ENST00000395682 RBM5P52756 815 aaKnown RBP eCLIP29.31■■■□□ 2.28
SHMT1-204ENST00000395682 MVPQ14764 893 aaKnown RBP29.31■■■□□ 2.28
SHMT1-204ENST00000395682 SAPCD2Q86UD0 394 aa29.31■■■□□ 2.28
SHMT1-204ENST00000395682 CDCA5Q96FF9 252 aa29.31■■■□□ 2.28
SHMT1-204ENST00000395682 COG6Q9Y2V7 657 aa29.31■■■□□ 2.28
SHMT1-204ENST00000395682 PCDHAC2Q9Y5I4 1007 aa29.31■■■□□ 2.28
SHMT1-204ENST00000395682 ADORA1P30542 326 aa29.3■■■□□ 2.28
SHMT1-204ENST00000395682 GRIK5Q16478 980 aa29.3■■■□□ 2.28
SHMT1-204ENST00000395682 PRMT6Q96LA8 375 aaPredicted RBP29.3■■■□□ 2.28
SHMT1-204ENST00000395682 PAXIP1Q6ZW49 1069 aaPredicted RBP29.29■■■□□ 2.28
SHMT1-204ENST00000395682 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP29.29■■■□□ 2.28
SHMT1-204ENST00000395682 A0A1B0GUL7 405 aa29.28■■■□□ 2.28
SHMT1-204ENST00000395682 SPDYE2BA6NHP3 402 aa29.28■■■□□ 2.28
SHMT1-204ENST00000395682 SPDYE6P0CI01 402 aa29.28■■■□□ 2.28
SHMT1-204ENST00000395682 C2orf69Q8N8R5 385 aa29.28■■■□□ 2.28
SHMT1-204ENST00000395682 GOLGA6L2Q8N9W4 650 aaPredicted RBP29.28■■■□□ 2.28
SHMT1-204ENST00000395682 SERPINA10Q9UK55 444 aa29.28■■■□□ 2.28
SHMT1-204ENST00000395682 DDX19BQ9UMR2 479 aa29.28■■■□□ 2.28
SHMT1-204ENST00000395682 MYO1BO43795 1136 aa29.27■■■□□ 2.28
SHMT1-204ENST00000395682 SURF6O75683 361 aaKnown RBP29.27■■■□□ 2.28
SHMT1-204ENST00000395682 PHKA1P46020 1223 aa29.27■■■□□ 2.28
SHMT1-204ENST00000395682 WDR66Q8TBY9 1149 aa29.27■■■□□ 2.28
SHMT1-204ENST00000395682 NEUROD6Q96NK8 337 aa29.27■■■□□ 2.28
SHMT1-204ENST00000395682 GBA2Q9HCG7 927 aaPredicted RBP29.27■■■□□ 2.28
SHMT1-204ENST00000395682 WDR33Q9C0J8 1336 aaKnown RBP29.26■■■□□ 2.27
SHMT1-204ENST00000395682 OS9Q13438 667 aaPredicted RBP29.26■■■□□ 2.27
SHMT1-204ENST00000395682 PRAMEF18Q5VWM3 479 aa29.26■■■□□ 2.27
SHMT1-204ENST00000395682 CCDC102BQ68D86 513 aa29.26■■■□□ 2.27
SHMT1-204ENST00000395682 CEP85Q6P2H3 762 aa29.26■■■□□ 2.27
SHMT1-204ENST00000395682 APOBEC3FQ8IUX4 373 aaKnown RBP29.26■■■□□ 2.27
SHMT1-204ENST00000395682 XAGE2Q96GT9 111 aa29.26■■■□□ 2.27
SHMT1-204ENST00000395682 PDE3AQ14432 1141 aa29.25■■■□□ 2.27
SHMT1-204ENST00000395682 C20orf194Q5TEA3 1177 aa29.25■■■□□ 2.27
SHMT1-204ENST00000395682 CYP4F22Q6NT55 531 aa29.25■■■□□ 2.27
SHMT1-204ENST00000395682 PCNTO95613 3336 aa29.24■■■□□ 2.27
SHMT1-204ENST00000395682 ECE1P42892 770 aa29.24■■■□□ 2.27
SHMT1-204ENST00000395682 HUNKP57058 714 aa29.24■■■□□ 2.27
SHMT1-204ENST00000395682 GRM1Q13255 1194 aa29.24■■■□□ 2.27
SHMT1-204ENST00000395682 HHIPL1Q96JK4 782 aa29.24■■■□□ 2.27
SHMT1-204ENST00000395682 CAPNS2Q96L46 248 aa29.24■■■□□ 2.27
SHMT1-204ENST00000395682 DENND2AQ9ULE3 1009 aa29.24■■■□□ 2.27
SHMT1-204ENST00000395682 SUGT1Q9Y2Z0 365 aa29.24■■■□□ 2.27
SHMT1-204ENST00000395682 CLRN2A0PK11 232 aa29.23■■■□□ 2.27
SHMT1-204ENST00000395682 SEMA3EO15041 775 aa29.23■■■□□ 2.27
SHMT1-204ENST00000395682 CRKP46108 304 aa29.23■■■□□ 2.27
SHMT1-204ENST00000395682 ZBTB40Q9NUA8 1239 aa29.23■■■□□ 2.27
SHMT1-204ENST00000395682 NOP58Q9Y2X3 529 aaKnown RBP29.23■■■□□ 2.27
SHMT1-204ENST00000395682 AOX1Q06278 1338 aa29.22■■■□□ 2.27
SHMT1-204ENST00000395682 HDLBPQ00341 1268 aaKnown RBP29.22■■■□□ 2.27
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms