RNA–Protein interactions for RNA: ENST00000381835.9

CIITA-202, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best) BASIC

Gene CIITA, Length 2,344 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-202ENST00000381835 GGA1Q9UJY5 639 aa14.91□□□□□ -0.02
CIITA-202ENST00000381835 HIBADHP31937 336 aaKnown RBP14.9□□□□□ -0.02
CIITA-202ENST00000381835 STYK1Q6J9G0 422 aa14.9□□□□□ -0.02
CIITA-202ENST00000381835 FBXO33Q7Z6M2 555 aa14.9□□□□□ -0.02
CIITA-202ENST00000381835 MYH13Q9UKX3 1938 aa14.9□□□□□ -0.02
CIITA-202ENST00000381835 LRRC37AA6NMS7 1700 aa14.9□□□□□ -0.02
CIITA-202ENST00000381835 SLX4Q8IY92 1834 aa14.9□□□□□ -0.02
CIITA-202ENST00000381835 ATP2B4P23634 1241 aa14.89□□□□□ -0.03
CIITA-202ENST00000381835 POLD1P28340 1107 aa14.89□□□□□ -0.03
CIITA-202ENST00000381835 TTF1Q15361 905 aaPredicted RBP14.89□□□□□ -0.03
CIITA-202ENST00000381835 KIAA1211Q6ZU35 1233 aa14.89□□□□□ -0.03
CIITA-202ENST00000381835 SEC62Q99442 399 aaKnown RBP14.89□□□□□ -0.03
CIITA-202ENST00000381835 TMX4Q9H1E5 349 aaPredicted RBP14.89□□□□□ -0.03
CIITA-202ENST00000381835 PIH1D3Q9NQM4 214 aaKnown RBP14.89□□□□□ -0.03
CIITA-202ENST00000381835 ZNF219Q9P2Y4 722 aaPredicted RBP14.89□□□□□ -0.03
CIITA-202ENST00000381835 RFX7Q2KHR2 1363 aa14.89□□□□□ -0.03
CIITA-202ENST00000381835 C10orf71Q711Q0 1435 aa14.89□□□□□ -0.03
CIITA-202ENST00000381835 C6orf229H3BNL8 230 aa14.89□□□□□ -0.03
CIITA-202ENST00000381835 IDH1O75874 414 aaKnown RBP14.89□□□□□ -0.03
CIITA-202ENST00000381835 RAB3GAP1Q15042 981 aa14.89□□□□□ -0.03
CIITA-202ENST00000381835 PRPF40BQ6NWY9 871 aaKnown RBP14.89□□□□□ -0.03
CIITA-202ENST00000381835 PODXL2Q9NZ53 605 aa14.89□□□□□ -0.03
CIITA-202ENST00000381835 POLLQ9UGP5 575 aa14.89□□□□□ -0.03
CIITA-202ENST00000381835 RNF113AO15541 343 aaKnown RBP14.88□□□□□ -0.03
CIITA-202ENST00000381835 TBC1D16Q8TBP0 767 aa14.88□□□□□ -0.03
CIITA-202ENST00000381835 KIF2CQ99661 725 aa14.88□□□□□ -0.03
CIITA-202ENST00000381835 IRS2Q9Y4H2 1338 aa14.88□□□□□ -0.03
CIITA-202ENST00000381835 SKOR2Q2VWA4 1001 aaPredicted RBP14.88□□□□□ -0.03
CIITA-202ENST00000381835 LRRFIP1Q32MZ4 808 aaKnown RBP14.88□□□□□ -0.03
CIITA-202ENST00000381835 ZNF589Q86UQ0 364 aaPredicted RBP14.88□□□□□ -0.03
CIITA-202ENST00000381835 CNKSR1Q969H4 720 aa14.88□□□□□ -0.03
CIITA-202ENST00000381835 NAP1L5Q96NT1 182 aaPredicted RBP14.88□□□□□ -0.03
CIITA-202ENST00000381835 DDX24Q9GZR7 859 aaKnown RBP eCLIP14.88□□□□□ -0.03
CIITA-202ENST00000381835 FOXD4L1Q9NU39 408 aa14.88□□□□□ -0.03
CIITA-202ENST00000381835 PTMSP20962 102 aa14.87□□□□□ -0.03
CIITA-202ENST00000381835 CCDC129Q6ZRS4 1044 aa14.87□□□□□ -0.03
CIITA-202ENST00000381835 MPNDQ8N594 471 aa14.87□□□□□ -0.03
CIITA-202ENST00000381835 RAD50Q92878 1312 aa14.87□□□□□ -0.03
CIITA-202ENST00000381835 A0A0G2JLW4 131 aa14.87□□□□□ -0.03
CIITA-202ENST00000381835 K7ELQ4 463 aaPredicted RBP14.87□□□□□ -0.03
CIITA-202ENST00000381835 WASHC4Q2M389 1173 aa14.87□□□□□ -0.03
CIITA-202ENST00000381835 MCMDC2Q4G0Z9 681 aa14.87□□□□□ -0.03
CIITA-202ENST00000381835 SLC9C2Q5TAH2 1124 aa14.87□□□□□ -0.03
CIITA-202ENST00000381835 DPP8Q6V1X1 898 aaPredicted RBP14.87□□□□□ -0.03
CIITA-202ENST00000381835 LSG1Q9H089 658 aaKnown RBP14.87□□□□□ -0.03
CIITA-202ENST00000381835 PPP1R1BQ9UD71 204 aaPredicted RBP14.87□□□□□ -0.03
CIITA-202ENST00000381835 ABCF2Q9UG63 623 aa14.87□□□□□ -0.03
CIITA-202ENST00000381835 DENND2AQ9ULE3 1009 aa14.87□□□□□ -0.03
CIITA-202ENST00000381835 COL1A1P02452 1464 aaPredicted RBP14.87□□□□□ -0.03
CIITA-202ENST00000381835 ZFYP08048 801 aaPredicted RBP14.86□□□□□ -0.03
CIITA-202ENST00000381835 PTH1RQ03431 593 aa14.86□□□□□ -0.03
CIITA-202ENST00000381835 ZMYM1Q5SVZ6 1142 aa14.86□□□□□ -0.03
CIITA-202ENST00000381835 ILDR2Q71H61 639 aa14.86□□□□□ -0.03
CIITA-202ENST00000381835 ZNF804AQ7Z570 1209 aa14.86□□□□□ -0.03
CIITA-202ENST00000381835 LTBP1Q14766 1721 aa14.86□□□□□ -0.03
CIITA-202ENST00000381835 MED23Q9ULK4 1368 aa14.86□□□□□ -0.03
CIITA-202ENST00000381835 CD2BP2O95400 341 aaKnown RBP14.86□□□□□ -0.03
CIITA-202ENST00000381835 CHAF1AQ13111 956 aaPredicted RBP14.86□□□□□ -0.03
CIITA-202ENST00000381835 TICAM2Q86XR7 235 aa14.86□□□□□ -0.03
CIITA-202ENST00000381835 LRP2BPQ9P2M1 347 aa14.86□□□□□ -0.03
CIITA-202ENST00000381835 JAG2Q9Y219 1238 aa14.86□□□□□ -0.03
CIITA-202ENST00000381835 DOCK2Q92608 1830 aa14.85□□□□□ -0.03
CIITA-202ENST00000381835 RIMBP2O15034 1052 aa14.85□□□□□ -0.03
CIITA-202ENST00000381835 DPEP1P16444 411 aa14.85□□□□□ -0.03
CIITA-202ENST00000381835 MAP3K12Q12852 859 aa14.85□□□□□ -0.03
CIITA-202ENST00000381835 ZSCAN25Q6NSZ9 544 aa14.85□□□□□ -0.03
CIITA-202ENST00000381835 KLHL34Q8N239 644 aa14.85□□□□□ -0.03
CIITA-202ENST00000381835 OSBP2Q969R2 916 aa14.85□□□□□ -0.03
CIITA-202ENST00000381835 HELLSQ9NRZ9 838 aa14.85□□□□□ -0.03
CIITA-202ENST00000381835 WWC3Q9ULE0 1092 aa14.85□□□□□ -0.03
CIITA-202ENST00000381835 KIF13BQ9NQT8 1826 aa14.85□□□□□ -0.03
CIITA-202ENST00000381835 CCDC171Q6TFL3 1326 aa14.85□□□□□ -0.03
CIITA-202ENST00000381835 SEMA3EO15041 775 aa14.84□□□□□ -0.03
CIITA-202ENST00000381835 MCCP23508 829 aa14.84□□□□□ -0.03
CIITA-202ENST00000381835 ADD2P35612 726 aa14.84□□□□□ -0.03
CIITA-202ENST00000381835 C15orf52Q6ZUT6 534 aaKnown RBP14.84□□□□□ -0.03
CIITA-202ENST00000381835 TRIM44Q96DX7 344 aaPredicted RBP14.84□□□□□ -0.03
CIITA-202ENST00000381835 DLEC1Q9Y238 1755 aa14.84□□□□□ -0.03
CIITA-202ENST00000381835 PDE6AP16499 860 aa14.84□□□□□ -0.03
CIITA-202ENST00000381835 MAST3O60307 1309 aa14.84□□□□□ -0.03
CIITA-202ENST00000381835 M0R2C6 588 aa14.83□□□□□ -0.03
CIITA-202ENST00000381835 GAS2L3Q86XJ1 694 aa14.83□□□□□ -0.03
CIITA-202ENST00000381835 MAGEB6Q8N7X4 407 aa14.83□□□□□ -0.03
CIITA-202ENST00000381835 TTLL6Q8N841 843 aa14.83□□□□□ -0.03
CIITA-202ENST00000381835 APPBP2Q92624 585 aa14.83□□□□□ -0.03
CIITA-202ENST00000381835 CD209Q9NNX6 404 aa14.83□□□□□ -0.03
CIITA-202ENST00000381835 ZNF532Q9HCE3 1301 aa14.83□□□□□ -0.03
CIITA-202ENST00000381835 DUOX1Q9NRD9 1551 aa14.83□□□□□ -0.04
CIITA-202ENST00000381835 ESPNB1AK53 854 aa14.83□□□□□ -0.04
CIITA-202ENST00000381835 TDRD7Q8NHU6 1098 aaKnown RBP14.83□□□□□ -0.04
CIITA-202ENST00000381835 ZC3H12CQ9C0D7 883 aaKnown RBP14.83□□□□□ -0.04
CIITA-202ENST00000381835 PUS7LQ9H0K6 701 aaKnown RBP14.83□□□□□ -0.04
CIITA-202ENST00000381835 RAI14Q9P0K7 980 aa14.83□□□□□ -0.04
CIITA-202ENST00000381835 PALD1Q9ULE6 856 aa14.83□□□□□ -0.04
CIITA-202ENST00000381835 EPB41L2O43491 1005 aaKnown RBP14.82□□□□□ -0.04
CIITA-202ENST00000381835 C21orf2O43822 256 aa14.82□□□□□ -0.04
CIITA-202ENST00000381835 KCNA3P22001 575 aa14.82□□□□□ -0.04
CIITA-202ENST00000381835 GOLGA6L22H0YM25 854 aa14.82□□□□□ -0.04
CIITA-202ENST00000381835 HSPA4P34932 840 aa14.82□□□□□ -0.04
CIITA-202ENST00000381835 UBE3CQ15386 1083 aa14.82□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms