RNA–Protein interactions for RNA: ENST00000378161.5

NPHP4-202, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 4,370 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-202ENST00000378161 KIAA0825Q8IV33 1275 aa13.35□□□□□ -0.27
NPHP4-202ENST00000378161 TTC5Q8N0Z6 440 aa13.35□□□□□ -0.27
NPHP4-202ENST00000378161 MBD5Q9P267 1494 aa13.35□□□□□ -0.27
NPHP4-202ENST00000378161 DYNC1I2Q13409 638 aaKnown RBP13.34□□□□□ -0.27
NPHP4-202ENST00000378161 PRPF4BQ13523 1007 aaKnown RBP13.34□□□□□ -0.27
NPHP4-202ENST00000378161 MCM10Q7L590 875 aa13.34□□□□□ -0.27
NPHP4-202ENST00000378161 NME9Q86XW9 330 aa13.34□□□□□ -0.27
NPHP4-202ENST00000378161 TRMT2AQ8IZ69 625 aaKnown RBP13.34□□□□□ -0.27
NPHP4-202ENST00000378161 CD248Q9HCU0 757 aa13.34□□□□□ -0.27
NPHP4-202ENST00000378161 DACT1Q9NYF0 836 aa13.34□□□□□ -0.27
NPHP4-202ENST00000378161 SKAP2O75563 359 aaPredicted RBP13.34□□□□□ -0.27
NPHP4-202ENST00000378161 RIC3Q7Z5B4 369 aa13.34□□□□□ -0.27
NPHP4-202ENST00000378161 WAPLQ7Z5K2 1190 aa13.34□□□□□ -0.27
NPHP4-202ENST00000378161 HOMER3Q9NSC5 361 aa13.34□□□□□ -0.27
NPHP4-202ENST00000378161 ZNF521Q96K83 1311 aa13.34□□□□□ -0.27
NPHP4-202ENST00000378161 RNF40O75150 1001 aa13.34□□□□□ -0.27
NPHP4-202ENST00000378161 TEX13AQ9BXU3 409 aaPredicted RBP13.34□□□□□ -0.27
NPHP4-202ENST00000378161 SAMM50Q9Y512 469 aa13.34□□□□□ -0.27
NPHP4-202ENST00000378161 PSDA5PKW4 1024 aaPredicted RBP13.34□□□□□ -0.27
NPHP4-202ENST00000378161 SYT1P21579 422 aa13.34□□□□□ -0.27
NPHP4-202ENST00000378161 PAIP2BQ9ULR5 123 aaKnown RBP13.34□□□□□ -0.27
NPHP4-202ENST00000378161 TTC41PQ6P2S7 1318 aa13.33□□□□□ -0.27
NPHP4-202ENST00000378161 CPP00450 1065 aa13.33□□□□□ -0.28
NPHP4-202ENST00000378161 PIP4K2BP78356 416 aa13.33□□□□□ -0.28
NPHP4-202ENST00000378161 OLFM4Q6UX06 510 aa13.33□□□□□ -0.28
NPHP4-202ENST00000378161 PNMA8AQ86V59 439 aaPredicted RBP13.33□□□□□ -0.28
NPHP4-202ENST00000378161 PBRM1Q86U86 1689 aa13.33□□□□□ -0.28
NPHP4-202ENST00000378161 STIM1Q13586 685 aa13.33□□□□□ -0.28
NPHP4-202ENST00000378161 PAX3P23760 479 aa13.33□□□□□ -0.28
NPHP4-202ENST00000378161 MRPL50Q8N5N7 158 aaKnown RBP13.33□□□□□ -0.28
NPHP4-202ENST00000378161 TMEM165Q9HC07 324 aa13.33□□□□□ -0.28
NPHP4-202ENST00000378161 HSF2BPO75031 334 aa13.32□□□□□ -0.28
NPHP4-202ENST00000378161 RAB11FIP3O75154 756 aa13.32□□□□□ -0.28
NPHP4-202ENST00000378161 ECEL1O95672 775 aa13.32□□□□□ -0.28
NPHP4-202ENST00000378161 KCNA4P22459 653 aa13.32□□□□□ -0.28
NPHP4-202ENST00000378161 GPTP24298 496 aa13.32□□□□□ -0.28
NPHP4-202ENST00000378161 SLC8A3P57103 927 aa13.32□□□□□ -0.28
NPHP4-202ENST00000378161 ANKRD44Q8N8A2 993 aa13.32□□□□□ -0.28
NPHP4-202ENST00000378161 UTP14AQ9BVJ6 771 aaKnown RBP13.32□□□□□ -0.28
NPHP4-202ENST00000378161 RGL1Q9NZL6 768 aa13.32□□□□□ -0.28
NPHP4-202ENST00000378161 CCNHP51946 323 aaPredicted RBP13.32□□□□□ -0.28
NPHP4-202ENST00000378161 POLE2P56282 527 aa13.32□□□□□ -0.28
NPHP4-202ENST00000378161 PSME1Q06323 249 aa13.32□□□□□ -0.28
NPHP4-202ENST00000378161 ARMC3Q5W041 872 aa13.32□□□□□ -0.28
NPHP4-202ENST00000378161 PARD3BQ8TEW8 1205 aa13.32□□□□□ -0.28
NPHP4-202ENST00000378161 PPP6R1Q9UPN7 881 aa13.32□□□□□ -0.28
NPHP4-202ENST00000378161 C21orf2O43822 256 aa13.32□□□□□ -0.28
NPHP4-202ENST00000378161 SDSP20132 328 aa13.32□□□□□ -0.28
NPHP4-202ENST00000378161 SYNE3Q6ZMZ3 975 aa13.32□□□□□ -0.28
NPHP4-202ENST00000378161 FERMT3Q86UX7 667 aa13.32□□□□□ -0.28
NPHP4-202ENST00000378161 JAKMIP1Q96N16 626 aaKnown RBP13.32□□□□□ -0.28
NPHP4-202ENST00000378161 PPFIA3O75145 1194 aa13.31□□□□□ -0.28
NPHP4-202ENST00000378161 AIMP1Q12904 312 aaKnown RBP13.31□□□□□ -0.28
NPHP4-202ENST00000378161 NUTM2GQ5VZR2 741 aa13.31□□□□□ -0.28
NPHP4-202ENST00000378161 BLOC1S2Q6QNY1 142 aa13.31□□□□□ -0.28
NPHP4-202ENST00000378161 ARHGAP22Q7Z5H3 698 aa13.31□□□□□ -0.28
NPHP4-202ENST00000378161 IMPACTQ9P2X3 320 aa13.31□□□□□ -0.28
NPHP4-202ENST00000378161 VAMP4O75379 141 aa13.31□□□□□ -0.28
NPHP4-202ENST00000378161 GLRX3O76003 335 aaKnown RBP13.31□□□□□ -0.28
NPHP4-202ENST00000378161 RCSD1Q6JBY9 416 aa13.31□□□□□ -0.28
NPHP4-202ENST00000378161 ABTB2Q8N961 1025 aa13.31□□□□□ -0.28
NPHP4-202ENST00000378161 VCX3BQ9H321 246 aa13.31□□□□□ -0.28
NPHP4-202ENST00000378161 VCX3AQ9NNX9 186 aa13.31□□□□□ -0.28
NPHP4-202ENST00000378161 WASLO00401 505 aaPredicted RBP13.31□□□□□ -0.28
NPHP4-202ENST00000378161 MAP4K4O95819 1239 aaPredicted RBP13.31□□□□□ -0.28
NPHP4-202ENST00000378161 PPFIA1Q13136 1202 aa13.31□□□□□ -0.28
NPHP4-202ENST00000378161 TRIM29Q14134 588 aa13.31□□□□□ -0.28
NPHP4-202ENST00000378161 PPP1R13BQ96KQ4 1090 aa13.31□□□□□ -0.28
NPHP4-202ENST00000378161 CFAP45Q9UL16 551 aa13.31□□□□□ -0.28
NPHP4-202ENST00000378161 PHLPP2Q6ZVD8 1323 aa13.31□□□□□ -0.28
NPHP4-202ENST00000378161 F13A1P00488 732 aa13.3□□□□□ -0.28
NPHP4-202ENST00000378161 SH3BGRP55822 239 aaPredicted RBP13.3□□□□□ -0.28
NPHP4-202ENST00000378161 PLEKHO1Q53GL0 409 aaPredicted RBP13.3□□□□□ -0.28
NPHP4-202ENST00000378161 MIS18AQ9NYP9 233 aa13.3□□□□□ -0.28
NPHP4-202ENST00000378161 MAST1Q9Y2H9 1570 aa13.3□□□□□ -0.28
NPHP4-202ENST00000378161 NCOA3Q9Y6Q9 1424 aa13.3□□□□□ -0.28
NPHP4-202ENST00000378161 FBXO31Q5XUX0 539 aaPredicted RBP13.3□□□□□ -0.28
NPHP4-202ENST00000378161 PPFIBP1Q86W92 1011 aa13.3□□□□□ -0.28
NPHP4-202ENST00000378161 DCTPP1Q9H773 170 aa13.3□□□□□ -0.28
NPHP4-202ENST00000378161 ACTR5Q9H9F9 607 aaPredicted RBP13.3□□□□□ -0.28
NPHP4-202ENST00000378161 ARHGEF5Q12774 1597 aa13.3□□□□□ -0.28
NPHP4-202ENST00000378161 MAGI2Q86UL8 1455 aa13.3□□□□□ -0.28
NPHP4-202ENST00000378161 F6X3S4 739 aa13.3□□□□□ -0.28
NPHP4-202ENST00000378161 LRRC31Q6UY01 552 aa13.3□□□□□ -0.28
NPHP4-202ENST00000378161 GIGYF2Q6Y7W6 1299 aaKnown RBP13.3□□□□□ -0.28
NPHP4-202ENST00000378161 C17orf50Q8WW18 174 aa13.3□□□□□ -0.28
NPHP4-202ENST00000378161 GOLGA6BA6NDN3 693 aa13.3□□□□□ -0.28
NPHP4-202ENST00000378161 DNM1Q05193 864 aaKnown RBP13.3□□□□□ -0.28
NPHP4-202ENST00000378161 ZC3H12AQ5D1E8 599 aaKnown RBP13.3□□□□□ -0.28
NPHP4-202ENST00000378161 RBM26Q5T8P6 1007 aaKnown RBP13.3□□□□□ -0.28
NPHP4-202ENST00000378161 TSHZ1Q6ZSZ6 1077 aa13.3□□□□□ -0.28
NPHP4-202ENST00000378161 CCDC80Q76M96 950 aa13.3□□□□□ -0.28
NPHP4-202ENST00000378161 DENND4BO75064 1496 aaPredicted RBP13.29□□□□□ -0.28
NPHP4-202ENST00000378161 CDC25BP30305 580 aa13.29□□□□□ -0.28
NPHP4-202ENST00000378161 PREPLQ4J6C6 727 aaPredicted RBP13.29□□□□□ -0.28
NPHP4-202ENST00000378161 PARP9Q8IXQ6 854 aa13.29□□□□□ -0.28
NPHP4-202ENST00000378161 GNAT3A8MTJ3 354 aa13.29□□□□□ -0.28
NPHP4-202ENST00000378161 MAGEA8P43361 318 aa13.29□□□□□ -0.28
NPHP4-202ENST00000378161 CCDC96Q2M329 555 aa13.29□□□□□ -0.28
NPHP4-202ENST00000378161 KIRREL3Q8IZU9 778 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms