RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 GPR101Q96P66 508 aaPredicted RBP18.59■□□□□ 0.57
CCDC40-202ENST00000374876 SBF1O95248 1867 aa18.59■□□□□ 0.57
CCDC40-202ENST00000374876 TAF5LO75529 589 aa18.59■□□□□ 0.57
CCDC40-202ENST00000374876 NCLP19338 710 aaKnown RBP18.59■□□□□ 0.57
CCDC40-202ENST00000374876 PTPN12Q05209 780 aaKnown RBP18.59■□□□□ 0.57
CCDC40-202ENST00000374876 CHRNDQ07001 517 aa18.59■□□□□ 0.57
CCDC40-202ENST00000374876 GRIPAP1Q4V328 841 aa18.59■□□□□ 0.57
CCDC40-202ENST00000374876 FAM43AQ8N2R8 423 aa18.59■□□□□ 0.57
CCDC40-202ENST00000374876 LTBP3Q9NS15 1303 aa18.58■□□□□ 0.57
CCDC40-202ENST00000374876 C6orf229H3BNL8 230 aa18.58■□□□□ 0.56
CCDC40-202ENST00000374876 HIP1O00291 1037 aa18.58■□□□□ 0.56
CCDC40-202ENST00000374876 PRPF40AO75400 957 aaKnown RBP18.58■□□□□ 0.56
CCDC40-202ENST00000374876 GAS2L3Q86XJ1 694 aa18.58■□□□□ 0.56
CCDC40-202ENST00000374876 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP18.58■□□□□ 0.56
CCDC40-202ENST00000374876 SNAP23O00161 211 aa18.57■□□□□ 0.56
CCDC40-202ENST00000374876 BRD1O95696 1058 aa18.57■□□□□ 0.56
CCDC40-202ENST00000374876 FOXD4L5Q5VV16 416 aaPredicted RBP18.57■□□□□ 0.56
CCDC40-202ENST00000374876 RASEFQ8IZ41 740 aa18.57■□□□□ 0.56
CCDC40-202ENST00000374876 TBC1D16Q8TBP0 767 aa18.57■□□□□ 0.56
CCDC40-202ENST00000374876 FOXD4L4Q8WXT5 416 aaPredicted RBP18.57■□□□□ 0.56
CCDC40-202ENST00000374876 RTFDC1Q9BY42 306 aaPredicted RBP18.57■□□□□ 0.56
CCDC40-202ENST00000374876 LRRC37AA6NMS7 1700 aa18.57■□□□□ 0.56
CCDC40-202ENST00000374876 CHD4Q14839 1912 aa18.57■□□□□ 0.56
CCDC40-202ENST00000374876 IARSP41252 1262 aaKnown RBP18.57■□□□□ 0.56
CCDC40-202ENST00000374876 TLR7Q9NYK1 1049 aaKnown RBP18.57■□□□□ 0.56
CCDC40-202ENST00000374876 PODXL2Q9NZ53 605 aa18.57■□□□□ 0.56
CCDC40-202ENST00000374876 RIPOR2Q9Y4F9 1068 aa18.57■□□□□ 0.56
CCDC40-202ENST00000374876 XDHP47989 1333 aa18.56■□□□□ 0.56
CCDC40-202ENST00000374876 RIMBP2O15034 1052 aa18.56■□□□□ 0.56
CCDC40-202ENST00000374876 UFL1O94874 794 aa18.56■□□□□ 0.56
CCDC40-202ENST00000374876 AOC3Q16853 763 aa18.56■□□□□ 0.56
CCDC40-202ENST00000374876 GGA1Q9UJY5 639 aa18.56■□□□□ 0.56
CCDC40-202ENST00000374876 TTC14Q96N46 770 aa18.56■□□□□ 0.56
CCDC40-202ENST00000374876 COPRSQ9NQ92 184 aa18.56■□□□□ 0.56
CCDC40-202ENST00000374876 PPIP5K2O43314 1243 aa18.55■□□□□ 0.56
CCDC40-202ENST00000374876 PTH1RQ03431 593 aa18.55■□□□□ 0.56
CCDC40-202ENST00000374876 WASHC4Q2M389 1173 aa18.55■□□□□ 0.56
CCDC40-202ENST00000374876 CAVIN1Q6NZI2 390 aaKnown RBP18.55■□□□□ 0.56
CCDC40-202ENST00000374876 SUPT20HQ8NEM7 779 aa18.55■□□□□ 0.56
CCDC40-202ENST00000374876 DUOX1Q9NRD9 1551 aa18.55■□□□□ 0.56
CCDC40-202ENST00000374876 CASTP20810 708 aaKnown RBP18.54■□□□□ 0.56
CCDC40-202ENST00000374876 AK2P54819 239 aa18.54■□□□□ 0.56
CCDC40-202ENST00000374876 LARGE2Q8N3Y3 721 aa18.54■□□□□ 0.56
CCDC40-202ENST00000374876 ANKRD2Q9GZV1 360 aa18.54■□□□□ 0.56
CCDC40-202ENST00000374876 BOLA2Q9H3K6 86 aa18.54■□□□□ 0.56
CCDC40-202ENST00000374876 LIMCH1Q9UPQ0 1083 aa18.54■□□□□ 0.56
CCDC40-202ENST00000374876 EYA2O00167 538 aa18.54■□□□□ 0.56
CCDC40-202ENST00000374876 FSD1Q9BTV5 496 aa18.54■□□□□ 0.56
CCDC40-202ENST00000374876 CCDC171Q6TFL3 1326 aa18.53■□□□□ 0.56
CCDC40-202ENST00000374876 ATP2B4P23634 1241 aa18.53■□□□□ 0.56
CCDC40-202ENST00000374876 YY1P25490 414 aa18.53■□□□□ 0.56
CCDC40-202ENST00000374876 ATG9AQ7Z3C6 839 aa18.53■□□□□ 0.56
CCDC40-202ENST00000374876 ZKSCAN1P17029 563 aaPredicted RBP18.52■□□□□ 0.56
CCDC40-202ENST00000374876 KCNJ4P48050 445 aa18.52■□□□□ 0.56
CCDC40-202ENST00000374876 NMIQ13287 307 aaPredicted RBP18.52■□□□□ 0.56
CCDC40-202ENST00000374876 METTL24Q5JXM2 366 aa18.52■□□□□ 0.56
CCDC40-202ENST00000374876 FAM227BQ96M60 508 aa18.52■□□□□ 0.56
CCDC40-202ENST00000374876 ZC3H12CQ9C0D7 883 aaKnown RBP18.52■□□□□ 0.56
CCDC40-202ENST00000374876 LTBP1Q14766 1721 aa18.52■□□□□ 0.56
CCDC40-202ENST00000374876 ZNF804BA4D1E1 1349 aa18.52■□□□□ 0.56
CCDC40-202ENST00000374876 WDR33Q9C0J8 1336 aaKnown RBP18.52■□□□□ 0.56
CCDC40-202ENST00000374876 COL4A5P29400 1685 aa18.52■□□□□ 0.56
CCDC40-202ENST00000374876 ZNF445P59923 1031 aa18.52■□□□□ 0.55
CCDC40-202ENST00000374876 KIAA2012Q0VF49 1180 aa18.52■□□□□ 0.55
CCDC40-202ENST00000374876 DOK7Q18PE1 504 aa18.52■□□□□ 0.55
CCDC40-202ENST00000374876 TXNRD3Q86VQ6 643 aa18.52■□□□□ 0.55
CCDC40-202ENST00000374876 JDP2Q8WYK2 163 aa18.52■□□□□ 0.55
CCDC40-202ENST00000374876 CHAMP1Q96JM3 812 aa18.52■□□□□ 0.55
CCDC40-202ENST00000374876 JAKMIP1Q96N16 626 aaKnown RBP18.52■□□□□ 0.55
CCDC40-202ENST00000374876 KLRK1P26718 216 aa18.51■□□□□ 0.55
CCDC40-202ENST00000374876 ZSCAN23Q3MJ62 389 aa18.51■□□□□ 0.55
CCDC40-202ENST00000374876 RUFY3Q7L099 469 aa18.51■□□□□ 0.55
CCDC40-202ENST00000374876 GPT2Q8TD30 523 aa18.51■□□□□ 0.55
CCDC40-202ENST00000374876 KCNB2Q92953 911 aa18.51■□□□□ 0.55
CCDC40-202ENST00000374876 EYA3Q99504 573 aa18.51■□□□□ 0.55
CCDC40-202ENST00000374876 TM6SF1Q9BZW5 370 aa18.51■□□□□ 0.55
CCDC40-202ENST00000374876 LEMD3Q9Y2U8 911 aa18.51■□□□□ 0.55
CCDC40-202ENST00000374876 MROH5Q6ZUA9 1318 aa18.51■□□□□ 0.55
CCDC40-202ENST00000374876 TFCP2Q12800 502 aa18.5■□□□□ 0.55
CCDC40-202ENST00000374876 NECTIN1Q15223 517 aa18.5■□□□□ 0.55
CCDC40-202ENST00000374876 TNNI3KQ59H18 835 aa18.5■□□□□ 0.55
CCDC40-202ENST00000374876 DBNDD1Q9H9R9 158 aa18.5■□□□□ 0.55
CCDC40-202ENST00000374876 PDRG1Q9NUG6 133 aa18.5■□□□□ 0.55
CCDC40-202ENST00000374876 ZSCAN21Q9Y5A6 473 aaPredicted RBP18.5■□□□□ 0.55
CCDC40-202ENST00000374876 RBM8AQ9Y5S9 174 aaKnown RBP18.5■□□□□ 0.55
CCDC40-202ENST00000374876 CYP46A1Q9Y6A2 500 aa18.5■□□□□ 0.55
CCDC40-202ENST00000374876 FPGT-TNNI3KV9GXZ4 949 aa18.5■□□□□ 0.55
CCDC40-202ENST00000374876 CPA1P15085 419 aa18.5■□□□□ 0.55
CCDC40-202ENST00000374876 VPS53Q5VIR6 699 aa18.5■□□□□ 0.55
CCDC40-202ENST00000374876 PDE8BO95263 885 aa18.49■□□□□ 0.55
CCDC40-202ENST00000374876 MBD3O95983 291 aa18.49■□□□□ 0.55
CCDC40-202ENST00000374876 ADCK5Q3MIX3 580 aa18.49■□□□□ 0.55
CCDC40-202ENST00000374876 NIM1KQ8IY84 436 aa18.49■□□□□ 0.55
CCDC40-202ENST00000374876 VGLL2Q8N8G2 317 aa18.49■□□□□ 0.55
CCDC40-202ENST00000374876 MAP4K1Q92918 833 aa18.49■□□□□ 0.55
CCDC40-202ENST00000374876 VPS33BQ9H267 617 aa18.49■□□□□ 0.55
CCDC40-202ENST00000374876 ZSWIM6Q9HCJ5 1215 aa18.49■□□□□ 0.55
CCDC40-202ENST00000374876 SNRKQ9NRH2 765 aa18.49■□□□□ 0.55
CCDC40-202ENST00000374876 DICER1Q9UPY3 1922 aaKnown RBP18.49■□□□□ 0.55
CCDC40-202ENST00000374876 A0A0D9SFI3 127 aa18.49■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms