RNA–Protein interactions for RNA: ENST00000349062.6

TRIM4-201, Transcript of tripartite motif containing 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TRIM4, Length 3,374 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4-201ENST00000349062 C3orf67Q6ZVT6 689 aa16.36■□□□□ 0.21
TRIM4-201ENST00000349062 SLC51AQ86UW1 340 aa16.36■□□□□ 0.21
TRIM4-201ENST00000349062 MICU3Q86XE3 530 aa16.36■□□□□ 0.21
TRIM4-201ENST00000349062 RAI14Q9P0K7 980 aa16.36■□□□□ 0.21
TRIM4-201ENST00000349062 EIF5P55010 431 aaKnown RBP16.36■□□□□ 0.21
TRIM4-201ENST00000349062 ERCC4Q92889 916 aaPredicted RBP16.36■□□□□ 0.21
TRIM4-201ENST00000349062 GTF3C6Q969F1 213 aa16.35■□□□□ 0.21
TRIM4-201ENST00000349062 USP25Q9UHP3 1055 aa16.35■□□□□ 0.21
TRIM4-201ENST00000349062 MBD4O95243 580 aa16.35■□□□□ 0.21
TRIM4-201ENST00000349062 LIG1P18858 919 aa16.35■□□□□ 0.21
TRIM4-201ENST00000349062 TRIM28Q13263 835 aaKnown RBP16.35■□□□□ 0.21
TRIM4-201ENST00000349062 USPL1Q5W0Q7 1092 aa16.35■□□□□ 0.21
TRIM4-201ENST00000349062 EPB41L2O43491 1005 aaKnown RBP16.35■□□□□ 0.21
TRIM4-201ENST00000349062 SLC5A1P13866 664 aa16.35■□□□□ 0.21
TRIM4-201ENST00000349062 PDCP20941 246 aa16.35■□□□□ 0.21
TRIM4-201ENST00000349062 RASGRF1Q13972 1273 aa16.35■□□□□ 0.21
TRIM4-201ENST00000349062 APPBP2Q92624 585 aa16.35■□□□□ 0.21
TRIM4-201ENST00000349062 TFCP2L1Q9NZI6 479 aa16.35■□□□□ 0.21
TRIM4-201ENST00000349062 MTMR7Q9Y216 660 aa16.35■□□□□ 0.21
TRIM4-201ENST00000349062 NKX2-3Q8TAU0 364 aa16.34■□□□□ 0.21
TRIM4-201ENST00000349062 ZNF830Q96NB3 372 aaPredicted RBP16.34■□□□□ 0.21
TRIM4-201ENST00000349062 ZNF445P59923 1031 aa16.34■□□□□ 0.21
TRIM4-201ENST00000349062 LRRFIP1Q32MZ4 808 aaKnown RBP16.34■□□□□ 0.21
TRIM4-201ENST00000349062 CCDC152Q4G0S7 254 aa16.34■□□□□ 0.21
TRIM4-201ENST00000349062 GPR108Q9NPR9 543 aa16.34■□□□□ 0.21
TRIM4-201ENST00000349062 PKD1L3Q7Z443 1732 aa16.34■□□□□ 0.21
TRIM4-201ENST00000349062 PDE6AP16499 860 aa16.34■□□□□ 0.21
TRIM4-201ENST00000349062 TDO2P48775 406 aa16.34■□□□□ 0.21
TRIM4-201ENST00000349062 UBE2HP62256 183 aa16.34■□□□□ 0.21
TRIM4-201ENST00000349062 PUM3Q15397 648 aaKnown RBP16.34■□□□□ 0.21
TRIM4-201ENST00000349062 LINC00116Q8NCU8 138 aa16.34■□□□□ 0.21
TRIM4-201ENST00000349062 PARP4Q9UKK3 1724 aaKnown RBP16.33■□□□□ 0.21
TRIM4-201ENST00000349062 CMTR1Q8N1G2 835 aaKnown RBP16.33■□□□□ 0.2
TRIM4-201ENST00000349062 ATP2B1P20020 1258 aa16.33■□□□□ 0.2
TRIM4-201ENST00000349062 CHRNDQ07001 517 aa16.33■□□□□ 0.2
TRIM4-201ENST00000349062 ZNF34Q8IZ26 560 aa16.33■□□□□ 0.2
TRIM4-201ENST00000349062 SPATA5Q8NB90 893 aa16.33■□□□□ 0.2
TRIM4-201ENST00000349062 PIBF1Q8WXW3 757 aa16.33■□□□□ 0.2
TRIM4-201ENST00000349062 DACT1Q9NYF0 836 aa16.33■□□□□ 0.2
TRIM4-201ENST00000349062 SMIM22K7EJ46 135 aa16.32■□□□□ 0.2
TRIM4-201ENST00000349062 CAMTA2O94983 1202 aa16.32■□□□□ 0.2
TRIM4-201ENST00000349062 TSC1Q92574 1164 aa16.32■□□□□ 0.2
TRIM4-201ENST00000349062 AIFM3Q96NN9 605 aa16.32■□□□□ 0.2
TRIM4-201ENST00000349062 PPP1R9BQ96SB3 815 aa16.32■□□□□ 0.2
TRIM4-201ENST00000349062 DSCC1Q9BVC3 393 aa16.32■□□□□ 0.2
TRIM4-201ENST00000349062 NAPBQ9H115 298 aa16.32■□□□□ 0.2
TRIM4-201ENST00000349062 SENP2Q9HC62 589 aa16.32■□□□□ 0.2
TRIM4-201ENST00000349062 USP21Q9UK80 565 aa16.32■□□□□ 0.2
TRIM4-201ENST00000349062 CRYBG1Q9Y4K1 1723 aa16.32■□□□□ 0.2
TRIM4-201ENST00000349062 TNS2Q63HR2 1409 aa16.32■□□□□ 0.2
TRIM4-201ENST00000349062 GNL2Q13823 731 aaKnown RBP16.32■□□□□ 0.2
TRIM4-201ENST00000349062 SDR42E1Q8WUS8 393 aa16.32■□□□□ 0.2
TRIM4-201ENST00000349062 KCNB2Q92953 911 aa16.32■□□□□ 0.2
TRIM4-201ENST00000349062 TUBGCP6Q96RT7 1819 aa16.32■□□□□ 0.2
TRIM4-201ENST00000349062 NBPF5PQ86XG9 351 aaPredicted RBP16.32■□□□□ 0.2
TRIM4-201ENST00000349062 SPC24Q8NBT2 197 aa16.32■□□□□ 0.2
TRIM4-201ENST00000349062 LPIN2Q92539 896 aa16.32■□□□□ 0.2
TRIM4-201ENST00000349062 PHKBQ93100 1093 aa16.32■□□□□ 0.2
TRIM4-201ENST00000349062 CTNNA3Q9UI47 895 aa16.32■□□□□ 0.2
TRIM4-201ENST00000349062 N4BP2Q86UW6 1770 aaPredicted RBP16.31■□□□□ 0.2
TRIM4-201ENST00000349062 ADAMTS7Q9UKP4 1686 aa16.31■□□□□ 0.2
TRIM4-201ENST00000349062 ROBO1Q9Y6N7 1651 aa16.31■□□□□ 0.2
TRIM4-201ENST00000349062 ZPR1O75312 459 aa16.31■□□□□ 0.2
TRIM4-201ENST00000349062 PRDM1O75626 825 aa16.31■□□□□ 0.2
TRIM4-201ENST00000349062 PDIA3P30101 505 aaKnown RBP16.31■□□□□ 0.2
TRIM4-201ENST00000349062 ADD1P35611 737 aaKnown RBP16.31■□□□□ 0.2
TRIM4-201ENST00000349062 CCDC183Q5T5S1 534 aa16.31■□□□□ 0.2
TRIM4-201ENST00000349062 NUP133Q8WUM0 1156 aa16.31■□□□□ 0.2
TRIM4-201ENST00000349062 SPATA31A5Q5VU36 1347 aa16.31■□□□□ 0.2
TRIM4-201ENST00000349062 SPATA31A7Q8IWB4 1347 aa16.31■□□□□ 0.2
TRIM4-201ENST00000349062 ME1P48163 572 aa16.3■□□□□ 0.2
TRIM4-201ENST00000349062 TBC1D9BQ66K14 1250 aa16.3■□□□□ 0.2
TRIM4-201ENST00000349062 GPR101Q96P66 508 aaPredicted RBP16.3■□□□□ 0.2
TRIM4-201ENST00000349062 UBE2Q2LH0YL09 131 aa16.3■□□□□ 0.2
TRIM4-201ENST00000349062 MAP3K12Q12852 859 aa16.3■□□□□ 0.2
TRIM4-201ENST00000349062 SF3A1Q15459 793 aaKnown RBP16.3■□□□□ 0.2
TRIM4-201ENST00000349062 TBC1D10CQ8IV04 446 aa16.3■□□□□ 0.2
TRIM4-201ENST00000349062 NCOA7Q8NI08 942 aa16.3■□□□□ 0.2
TRIM4-201ENST00000349062 CELF1Q92879 486 aaKnown RBP16.3■□□□□ 0.2
TRIM4-201ENST00000349062 MCM5P33992 734 aa16.3■□□□□ 0.2
TRIM4-201ENST00000349062 ANKRD18AQ8IVF6 992 aa16.3■□□□□ 0.2
TRIM4-201ENST00000349062 NSUN7Q8NE18 718 aaKnown RBP16.3■□□□□ 0.2
TRIM4-201ENST00000349062 ORC3Q9UBD5 711 aaPredicted RBP16.3■□□□□ 0.2
TRIM4-201ENST00000349062 CCNL1Q9UK58 526 aaPredicted RBP16.3■□□□□ 0.2
TRIM4-201ENST00000349062 SLC4A4Q9Y6R1 1079 aa16.3■□□□□ 0.2
TRIM4-201ENST00000349062 CYP7A1P22680 504 aa16.29■□□□□ 0.2
TRIM4-201ENST00000349062 ADD2P35612 726 aa16.29■□□□□ 0.2
TRIM4-201ENST00000349062 ZNF652Q9Y2D9 606 aa16.29■□□□□ 0.2
TRIM4-201ENST00000349062 CYP2D7A0A087X1C5 515 aa16.29■□□□□ 0.2
TRIM4-201ENST00000349062 ERVV-1B6SEH8 477 aa16.29■□□□□ 0.2
TRIM4-201ENST00000349062 FOXP2O15409 715 aa16.29■□□□□ 0.2
TRIM4-201ENST00000349062 CTDNEP1O95476 244 aa16.29■□□□□ 0.2
TRIM4-201ENST00000349062 TOGARAM1Q9Y4F4 1720 aa16.29■□□□□ 0.2
TRIM4-201ENST00000349062 ZFYP08048 801 aaPredicted RBP16.29■□□□□ 0.2
TRIM4-201ENST00000349062 HMGB1P09429 215 aaKnown RBP16.29■□□□□ 0.2
TRIM4-201ENST00000349062 KLRK1P26718 216 aa16.29■□□□□ 0.2
TRIM4-201ENST00000349062 CSPP1Q1MSJ5 1256 aa16.29■□□□□ 0.2
TRIM4-201ENST00000349062 AMIGO3Q86WK7 504 aa16.28■□□□□ 0.2
TRIM4-201ENST00000349062 SETDB2Q96T68 719 aa16.28■□□□□ 0.2
TRIM4-201ENST00000349062 PLA2G12BQ9BX93 195 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms