RNA–Protein interactions for RNA: ENST00000342245.8

SMPD1-201, Transcript of sphingomyelin phosphodiesterase 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SMPD1, Length 2,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD1-201ENST00000342245 ADALQ6DHV7 355 aa21.28■■□□□ 1
SMPD1-201ENST00000342245 FAM204AQ9H8W3 233 aa21.28■■□□□ 1
SMPD1-201ENST00000342245 ALKQ9UM73 1620 aa21.28■■□□□ 1
SMPD1-201ENST00000342245 FAM69CQ0P6D2 419 aa21.28■■□□□ 1
SMPD1-201ENST00000342245 NBPF6Q5VWK0 638 aa21.28■■□□□ 1
SMPD1-201ENST00000342245 NBPF4Q96M43 638 aa21.28■■□□□ 1
SMPD1-201ENST00000342245 AARSP49588 968 aaKnown RBP eCLIP21.27■■□□□ 1
SMPD1-201ENST00000342245 WAPLQ7Z5K2 1190 aa21.27■■□□□ 1
SMPD1-201ENST00000342245 BAG1Q99933 345 aaPredicted RBP21.27■■□□□ 1
SMPD1-201ENST00000342245 RBM28Q9NW13 759 aaKnown RBP21.27■■□□□ 1
SMPD1-201ENST00000342245 NBPF20Q3BBV1 942 aa21.27■□□□□ 0.99
SMPD1-201ENST00000342245 PPP1R42Q7Z4L9 355 aa21.27■□□□□ 0.99
SMPD1-201ENST00000342245 TMEM139Q8IV31 216 aa21.27■□□□□ 0.99
SMPD1-201ENST00000342245 FAM177A1Q8N128 213 aaPredicted RBP21.27■□□□□ 0.99
SMPD1-201ENST00000342245 CCDC12Q8WUD4 166 aaPredicted RBP21.27■□□□□ 0.99
SMPD1-201ENST00000342245 USP44Q9H0E7 712 aa21.27■□□□□ 0.99
SMPD1-201ENST00000342245 ABCB6Q9NP58 842 aa21.27■□□□□ 0.99
SMPD1-201ENST00000342245 CDC23Q9UJX2 597 aa21.27■□□□□ 0.99
SMPD1-201ENST00000342245 KIF3CO14782 793 aa21.26■□□□□ 0.99
SMPD1-201ENST00000342245 CEBPZQ03701 1054 aaKnown RBP21.26■□□□□ 0.99
SMPD1-201ENST00000342245 MCM10Q7L590 875 aa21.26■□□□□ 0.99
SMPD1-201ENST00000342245 SMARCC2Q8TAQ2 1214 aa21.26■□□□□ 0.99
SMPD1-201ENST00000342245 ECHDC1Q9NTX5 307 aa21.26■□□□□ 0.99
SMPD1-201ENST00000342245 ABCC6O95255 1503 aa21.26■□□□□ 0.99
SMPD1-201ENST00000342245 FAM208AQ9UK61 1670 aaKnown RBP21.26■□□□□ 0.99
SMPD1-201ENST00000342245 N4BP1O75113 896 aaKnown RBP21.26■□□□□ 0.99
SMPD1-201ENST00000342245 SERPINC1P01008 464 aa21.26■□□□□ 0.99
SMPD1-201ENST00000342245 EBAG9O00559 213 aa21.25■□□□□ 0.99
SMPD1-201ENST00000342245 SLC3A2P08195 630 aaKnown RBP21.25■□□□□ 0.99
SMPD1-201ENST00000342245 TSPYL4Q9UJ04 414 aa21.25■□□□□ 0.99
SMPD1-201ENST00000342245 WDHD1O75717 1129 aaPredicted RBP21.24■□□□□ 0.99
SMPD1-201ENST00000342245 DDR1Q08345 913 aa21.24■□□□□ 0.99
SMPD1-201ENST00000342245 STK3Q13188 491 aa21.24■□□□□ 0.99
SMPD1-201ENST00000342245 GRIPAP1Q4V328 841 aa21.24■□□□□ 0.99
SMPD1-201ENST00000342245 KAT2BQ92831 832 aa21.24■□□□□ 0.99
SMPD1-201ENST00000342245 ATXN2Q99700 1313 aaKnown RBP21.24■□□□□ 0.99
SMPD1-201ENST00000342245 A0A087WWV3 80 aa21.24■□□□□ 0.99
SMPD1-201ENST00000342245 PATL2C9JE40 543 aaKnown RBP21.24■□□□□ 0.99
SMPD1-201ENST00000342245 JAK2O60674 1132 aa21.24■□□□□ 0.99
SMPD1-201ENST00000342245 MCM3P25205 808 aa21.24■□□□□ 0.99
SMPD1-201ENST00000342245 USP28Q96RU2 1077 aa21.24■□□□□ 0.99
SMPD1-201ENST00000342245 SHOX2O60902 331 aaPredicted RBP21.23■□□□□ 0.99
SMPD1-201ENST00000342245 CFAP100Q494V2 611 aa21.23■□□□□ 0.99
SMPD1-201ENST00000342245 LRCH2Q5VUJ6 765 aa21.23■□□□□ 0.99
SMPD1-201ENST00000342245 GBP6Q6ZN66 633 aa21.23■□□□□ 0.99
SMPD1-201ENST00000342245 CLASRPQ8N2M8 674 aaKnown RBP21.23■□□□□ 0.99
SMPD1-201ENST00000342245 GIMAP7Q8NHV1 300 aa21.23■□□□□ 0.99
SMPD1-201ENST00000342245 NPHP4O75161 1426 aaPredicted RBP21.23■□□□□ 0.99
SMPD1-201ENST00000342245 ANKRD65E5RJM6 399 aa21.23■□□□□ 0.99
SMPD1-201ENST00000342245 LMOD1P29536 600 aaPredicted RBP21.23■□□□□ 0.99
SMPD1-201ENST00000342245 DDX54Q8TDD1 881 aaKnown RBP21.23■□□□□ 0.99
SMPD1-201ENST00000342245 DLC1Q96QB1 1528 aa21.23■□□□□ 0.99
SMPD1-201ENST00000342245 EXOC5O00471 708 aa21.22■□□□□ 0.99
SMPD1-201ENST00000342245 TBC1D22AQ8WUA7 517 aa21.22■□□□□ 0.99
SMPD1-201ENST00000342245 FBXW7Q969H0 707 aa21.22■□□□□ 0.99
SMPD1-201ENST00000342245 RNF40O75150 1001 aa21.22■□□□□ 0.99
SMPD1-201ENST00000342245 PIP4K2BP78356 416 aa21.22■□□□□ 0.99
SMPD1-201ENST00000342245 MYL5Q02045 173 aa21.22■□□□□ 0.99
SMPD1-201ENST00000342245 PNKPQ96T60 521 aa21.22■□□□□ 0.99
SMPD1-201ENST00000342245 GNL3LQ9NVN8 582 aaKnown RBP21.22■□□□□ 0.99
SMPD1-201ENST00000342245 RTEL1Q9NZ71 1219 aa21.22■□□□□ 0.99
SMPD1-201ENST00000342245 JCADQ9P266 1359 aa21.21■□□□□ 0.99
SMPD1-201ENST00000342245 WDR93Q6P2C0 686 aa21.21■□□□□ 0.99
SMPD1-201ENST00000342245 KCNV1Q6PIU1 500 aa21.21■□□□□ 0.99
SMPD1-201ENST00000342245 FMNL2Q96PY5 1086 aa21.21■□□□□ 0.99
SMPD1-201ENST00000342245 SBNO1A3KN83 1393 aa21.21■□□□□ 0.99
SMPD1-201ENST00000342245 TBX2Q13207 712 aaPredicted RBP21.21■□□□□ 0.99
SMPD1-201ENST00000342245 SF3B2Q13435 895 aaKnown RBP21.21■□□□□ 0.99
SMPD1-201ENST00000342245 MAP9Q49MG5 647 aa21.21■□□□□ 0.99
SMPD1-201ENST00000342245 KCNG4Q8TDN1 519 aa21.21■□□□□ 0.99
SMPD1-201ENST00000342245 COG3Q96JB2 828 aa21.21■□□□□ 0.99
SMPD1-201ENST00000342245 PCDHA7Q9UN72 937 aa21.21■□□□□ 0.99
SMPD1-201ENST00000342245 NUTM2FA1L443 756 aa21.2■□□□□ 0.98
SMPD1-201ENST00000342245 CCDC175P0C221 793 aa21.2■□□□□ 0.98
SMPD1-201ENST00000342245 NUTM2GQ5VZR2 741 aa21.2■□□□□ 0.98
SMPD1-201ENST00000342245 PRPF38AQ8NAV1 312 aaKnown RBP21.2■□□□□ 0.98
SMPD1-201ENST00000342245 FAM169AQ9Y6X4 670 aa21.2■□□□□ 0.98
SMPD1-201ENST00000342245 TMCO5BA8MYB1 307 aa21.2■□□□□ 0.98
SMPD1-201ENST00000342245 KIF5CO60282 957 aa21.2■□□□□ 0.98
SMPD1-201ENST00000342245 NEDD9Q14511 834 aa21.2■□□□□ 0.98
SMPD1-201ENST00000342245 SULT6B1Q6IMI4 303 aa21.2■□□□□ 0.98
SMPD1-201ENST00000342245 INPP5BP32019 993 aa21.19■□□□□ 0.98
SMPD1-201ENST00000342245 LIG3P49916 1009 aa21.19■□□□□ 0.98
SMPD1-201ENST00000342245 WHAMMP3Q1A5X7 153 aa21.19■□□□□ 0.98
SMPD1-201ENST00000342245 KIF4BQ2VIQ3 1234 aa21.19■□□□□ 0.98
SMPD1-201ENST00000342245 SPATS2Q86XZ4 545 aaKnown RBP21.19■□□□□ 0.98
SMPD1-201ENST00000342245 CABS1Q96KC9 395 aa21.19■□□□□ 0.98
SMPD1-201ENST00000342245 ERCC3P19447 782 aa21.19■□□□□ 0.98
SMPD1-201ENST00000342245 SMARCC1Q92922 1105 aaPredicted RBP21.19■□□□□ 0.98
SMPD1-201ENST00000342245 A6NNZ2 444 aa21.18■□□□□ 0.98
SMPD1-201ENST00000342245 PRPF6O94906 941 aaKnown RBP21.18■□□□□ 0.98
SMPD1-201ENST00000342245 HSP90B1P14625 803 aaKnown RBP21.18■□□□□ 0.98
SMPD1-201ENST00000342245 NDUFA8P51970 172 aa21.18■□□□□ 0.98
SMPD1-201ENST00000342245 TUBB8Q3ZCM7 444 aa21.18■□□□□ 0.98
SMPD1-201ENST00000342245 SAMD1Q6SPF0 538 aaPredicted RBP21.18■□□□□ 0.98
SMPD1-201ENST00000342245 HSD3B7Q9H2F3 369 aa21.18■□□□□ 0.98
SMPD1-201ENST00000342245 PFKFB2O60825 505 aa21.18■□□□□ 0.98
SMPD1-201ENST00000342245 NMIQ13287 307 aaPredicted RBP21.18■□□□□ 0.98
SMPD1-201ENST00000342245 PLEKHO1Q53GL0 409 aaPredicted RBP21.18■□□□□ 0.98
SMPD1-201ENST00000342245 SHTN1A0MZ66 631 aa21.17■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms