RNA–Protein interactions for RNA: ENST00000339438.10

CSDE1-202, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 4,006 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-202ENST00000339438 BRMS1Q9HCU9 246 aa6.62□□□□□ -1.35
CSDE1-202ENST00000339438 BCCIPQ9P287 314 aaKnown RBP eCLIP6.62□□□□□ -1.35
CSDE1-202ENST00000339438 ZBTB1Q9Y2K1 713 aa6.62□□□□□ -1.35
CSDE1-202ENST00000339438 MYH8P13535 1937 aa6.62□□□□□ -1.35
CSDE1-202ENST00000339438 HAP1P54257 671 aaPredicted RBP6.61□□□□□ -1.35
CSDE1-202ENST00000339438 CCDC186Q7Z3E2 898 aa6.61□□□□□ -1.35
CSDE1-202ENST00000339438 VGLL2Q8N8G2 317 aa6.61□□□□□ -1.35
CSDE1-202ENST00000339438 GTF3C6Q969F1 213 aa6.61□□□□□ -1.35
CSDE1-202ENST00000339438 PALD1Q9ULE6 856 aa6.61□□□□□ -1.35
CSDE1-202ENST00000339438 CNPY2Q9Y2B0 182 aa6.61□□□□□ -1.35
CSDE1-202ENST00000339438 MRVI1Q9Y6F6 885 aa6.61□□□□□ -1.35
CSDE1-202ENST00000339438 KAT6BQ8WYB5 2073 aa6.61□□□□□ -1.35
CSDE1-202ENST00000339438 SASH3O75995 380 aa6.61□□□□□ -1.35
CSDE1-202ENST00000339438 ALDH1L2Q3SY69 923 aa6.61□□□□□ -1.35
CSDE1-202ENST00000339438 AXDND1Q5T1B0 1012 aaPredicted RBP6.61□□□□□ -1.35
CSDE1-202ENST00000339438 THUMPD2Q9BTF0 503 aaKnown RBP6.61□□□□□ -1.35
CSDE1-202ENST00000339438 COL11A1P12107 1806 aaPredicted RBP6.61□□□□□ -1.35
CSDE1-202ENST00000339438 FANCGO15287 622 aa6.61□□□□□ -1.35
CSDE1-202ENST00000339438 APBA3O96018 575 aa6.61□□□□□ -1.35
CSDE1-202ENST00000339438 HLFQ16534 295 aa6.61□□□□□ -1.35
CSDE1-202ENST00000339438 CEP135Q66GS9 1140 aa6.61□□□□□ -1.35
CSDE1-202ENST00000339438 MCM10Q7L590 875 aa6.61□□□□□ -1.35
CSDE1-202ENST00000339438 C8orf58Q8NAV2 365 aa6.61□□□□□ -1.35
CSDE1-202ENST00000339438 MYCBPQ99417 103 aaPredicted RBP6.61□□□□□ -1.35
CSDE1-202ENST00000339438 DCTPP1Q9H773 170 aa6.61□□□□□ -1.35
CSDE1-202ENST00000339438 ZSCAN21Q9Y5A6 473 aaPredicted RBP6.61□□□□□ -1.35
CSDE1-202ENST00000339438 CD2APQ9Y5K6 639 aa6.61□□□□□ -1.35
CSDE1-202ENST00000339438 MYH15Q9Y2K3 1946 aa6.6□□□□□ -1.35
CSDE1-202ENST00000339438 CCDC189A1A4V9 331 aa6.6□□□□□ -1.35
CSDE1-202ENST00000339438 UBE2HP62256 183 aa6.6□□□□□ -1.35
CSDE1-202ENST00000339438 KRT24Q2M2I5 525 aa6.6□□□□□ -1.35
CSDE1-202ENST00000339438 CLEC4GQ6UXB4 293 aa6.6□□□□□ -1.35
CSDE1-202ENST00000339438 ZNF622Q969S3 477 aaKnown RBP eCLIP6.6□□□□□ -1.35
CSDE1-202ENST00000339438 MYH1P12882 1939 aa6.6□□□□□ -1.35
CSDE1-202ENST00000339438 ELL2O00472 640 aaPredicted RBP6.6□□□□□ -1.35
CSDE1-202ENST00000339438 GTF2A1P52655 376 aaPredicted RBP6.6□□□□□ -1.35
CSDE1-202ENST00000339438 DCTN1Q14203 1278 aa6.6□□□□□ -1.35
CSDE1-202ENST00000339438 PLEKHO1Q53GL0 409 aaPredicted RBP6.6□□□□□ -1.35
CSDE1-202ENST00000339438 CTR9Q6PD62 1173 aa6.6□□□□□ -1.35
CSDE1-202ENST00000339438 KRBA2Q6ZNG9 492 aa6.6□□□□□ -1.35
CSDE1-202ENST00000339438 RBM43Q6ZSC3 357 aaKnown RBP6.6□□□□□ -1.35
CSDE1-202ENST00000339438 RFX5P48382 616 aaPredicted RBP6.6□□□□□ -1.35
CSDE1-202ENST00000339438 ACSBG1Q96GR2 724 aa6.6□□□□□ -1.35
CSDE1-202ENST00000339438 CSF1RP07333 972 aa6.6□□□□□ -1.35
CSDE1-202ENST00000339438 CCZ1BP86790 482 aa6.6□□□□□ -1.35
CSDE1-202ENST00000339438 CCZ1P86791 482 aaPredicted RBP6.6□□□□□ -1.35
CSDE1-202ENST00000339438 INTS3Q68E01 1043 aaKnown RBP6.6□□□□□ -1.35
CSDE1-202ENST00000339438 RTF1Q92541 710 aaKnown RBP6.6□□□□□ -1.35
CSDE1-202ENST00000339438 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP6.6□□□□□ -1.35
CSDE1-202ENST00000339438 DNAH12Q6ZR08 3092 aa6.59□□□□□ -1.35
CSDE1-202ENST00000339438 PRUNE2Q8WUY3 3088 aa6.59□□□□□ -1.35
CSDE1-202ENST00000339438 SALL3Q9BXA9 1300 aa6.59□□□□□ -1.35
CSDE1-202ENST00000339438 CDHR2Q9BYE9 1310 aa6.59□□□□□ -1.35
CSDE1-202ENST00000339438 ZNF75DP51815 510 aa6.59□□□□□ -1.35
CSDE1-202ENST00000339438 ARID5BQ14865 1188 aa6.59□□□□□ -1.35
CSDE1-202ENST00000339438 TBC1D9BQ66K14 1250 aa6.59□□□□□ -1.35
CSDE1-202ENST00000339438 LRRC8AQ8IWT6 810 aa6.59□□□□□ -1.35
CSDE1-202ENST00000339438 C10orf67Q8IYJ2 551 aa6.59□□□□□ -1.35
CSDE1-202ENST00000339438 ZBED3Q96IU2 234 aaPredicted RBP6.59□□□□□ -1.35
CSDE1-202ENST00000339438 NLRP2Q9NX02 1062 aa6.59□□□□□ -1.35
CSDE1-202ENST00000339438 ATG2AQ2TAZ0 1938 aa6.59□□□□□ -1.35
CSDE1-202ENST00000339438 ATP2B1P20020 1258 aa6.59□□□□□ -1.35
CSDE1-202ENST00000339438 ERCC6LQ2NKX8 1250 aa6.59□□□□□ -1.35
CSDE1-202ENST00000339438 RABL6Q3YEC7 729 aaPredicted RBP6.59□□□□□ -1.35
CSDE1-202ENST00000339438 SWT1Q5T5J6 900 aaKnown RBP6.59□□□□□ -1.35
CSDE1-202ENST00000339438 ARHGAP30Q7Z6I6 1101 aaPredicted RBP6.59□□□□□ -1.35
CSDE1-202ENST00000339438 DNAJC10Q8IXB1 793 aa6.59□□□□□ -1.35
CSDE1-202ENST00000339438 CNPY4Q8N129 248 aa6.59□□□□□ -1.35
CSDE1-202ENST00000339438 TXLNBQ8N3L3 684 aa6.59□□□□□ -1.35
CSDE1-202ENST00000339438 FBXO18Q8NFZ0 1043 aa6.59□□□□□ -1.35
CSDE1-202ENST00000339438 ARHGAP45Q92619 1136 aa6.59□□□□□ -1.35
CSDE1-202ENST00000339438 ZCCHC17Q9NP64 241 aaKnown RBP6.59□□□□□ -1.35
CSDE1-202ENST00000339438 CEP83Q9Y592 693 aa6.59□□□□□ -1.35
CSDE1-202ENST00000339438 WDR81Q562E7 1941 aa6.59□□□□□ -1.36
CSDE1-202ENST00000339438 TBC1D8O95759 1140 aa6.59□□□□□ -1.36
CSDE1-202ENST00000339438 CCDC172P0C7W6 258 aa6.59□□□□□ -1.36
CSDE1-202ENST00000339438 TAF7Q15545 349 aaPredicted RBP6.59□□□□□ -1.36
CSDE1-202ENST00000339438 ZSCAN26Q16670 478 aa6.59□□□□□ -1.36
CSDE1-202ENST00000339438 LUZP1Q86V48 1076 aa6.59□□□□□ -1.36
CSDE1-202ENST00000339438 MRPL50Q8N5N7 158 aaKnown RBP6.59□□□□□ -1.36
CSDE1-202ENST00000339438 PSD3Q9NYI0 1048 aa6.59□□□□□ -1.36
CSDE1-202ENST00000339438 CDC25BP30305 580 aa6.58□□□□□ -1.36
CSDE1-202ENST00000339438 FOXO4P98177 505 aa6.58□□□□□ -1.36
CSDE1-202ENST00000339438 FAM200AQ8TCP9 573 aa6.58□□□□□ -1.36
CSDE1-202ENST00000339438 SMARCC1Q92922 1105 aaPredicted RBP6.58□□□□□ -1.36
CSDE1-202ENST00000339438 SYT17Q9BSW7 474 aa6.58□□□□□ -1.36
CSDE1-202ENST00000339438 RRP15Q9Y3B9 282 aaKnown RBP6.58□□□□□ -1.36
CSDE1-202ENST00000339438 JRKLQ9Y4A0 524 aa6.58□□□□□ -1.36
CSDE1-202ENST00000339438 NEK4P51957 841 aa6.58□□□□□ -1.36
CSDE1-202ENST00000339438 EGFL6Q8IUX8 553 aa6.58□□□□□ -1.36
CSDE1-202ENST00000339438 SUGP1Q8IWZ8 645 aaKnown RBP6.58□□□□□ -1.36
CSDE1-202ENST00000339438 TDRD7Q8NHU6 1098 aaKnown RBP6.58□□□□□ -1.36
CSDE1-202ENST00000339438 SLU7O95391 586 aaKnown RBP6.58□□□□□ -1.36
CSDE1-202ENST00000339438 CPP00450 1065 aa6.58□□□□□ -1.36
CSDE1-202ENST00000339438 SLC39A6Q13433 755 aa6.58□□□□□ -1.36
CSDE1-202ENST00000339438 NFIXQ14938 502 aa6.58□□□□□ -1.36
CSDE1-202ENST00000339438 OSBPL3Q9H4L5 887 aa6.58□□□□□ -1.36
CSDE1-202ENST00000339438 CBX8Q9HC52 389 aa6.58□□□□□ -1.36
CSDE1-202ENST00000339438 DONSONQ9NYP3 566 aa6.58□□□□□ -1.36
CSDE1-202ENST00000339438 CDH23Q9H251 3354 aa6.58□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms