RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 RHOXF2Q9BQY4 288 aa13.08□□□□□ -0.32
VPS39-201ENST00000318006 LRRC2Q9BYS8 371 aa13.08□□□□□ -0.32
VPS39-201ENST00000318006 KDM2BQ8NHM5 1336 aa13.08□□□□□ -0.32
VPS39-201ENST00000318006 TACC1O75410 805 aa13.08□□□□□ -0.32
VPS39-201ENST00000318006 ATP6V1AP38606 617 aa13.08□□□□□ -0.32
VPS39-201ENST00000318006 NBPF6Q5VWK0 638 aa13.08□□□□□ -0.32
VPS39-201ENST00000318006 NBPF5PQ86XG9 351 aaPredicted RBP13.08□□□□□ -0.32
VPS39-201ENST00000318006 NBPF4Q96M43 638 aa13.08□□□□□ -0.32
VPS39-201ENST00000318006 PPP1R9BQ96SB3 815 aa13.08□□□□□ -0.32
VPS39-201ENST00000318006 PAG1Q9NWQ8 432 aa13.08□□□□□ -0.32
VPS39-201ENST00000318006 ZEB2O60315 1214 aa13.08□□□□□ -0.32
VPS39-201ENST00000318006 ELF2Q15723 593 aa13.08□□□□□ -0.32
VPS39-201ENST00000318006 CCDC96Q2M329 555 aa13.08□□□□□ -0.32
VPS39-201ENST00000318006 TSPY2A6NKD2 308 aa13.07□□□□□ -0.32
VPS39-201ENST00000318006 RTL1A6NKG5 1358 aa13.07□□□□□ -0.32
VPS39-201ENST00000318006 B4GALNT4Q76KP1 1039 aa13.07□□□□□ -0.32
VPS39-201ENST00000318006 POTEDQ86YR6 584 aa13.07□□□□□ -0.32
VPS39-201ENST00000318006 RAB34Q9BZG1 259 aa13.07□□□□□ -0.32
VPS39-201ENST00000318006 PLEKHG3A1L390 1219 aa13.07□□□□□ -0.32
VPS39-201ENST00000318006 FSD2A1L4K1 749 aa13.07□□□□□ -0.32
VPS39-201ENST00000318006 RFC4P35249 363 aa13.07□□□□□ -0.32
VPS39-201ENST00000318006 KRT83P78385 493 aa13.07□□□□□ -0.32
VPS39-201ENST00000318006 NAA25Q14CX7 972 aa13.07□□□□□ -0.32
VPS39-201ENST00000318006 KARSQ15046 597 aaKnown RBP13.07□□□□□ -0.32
VPS39-201ENST00000318006 DDB1Q16531 1140 aa13.07□□□□□ -0.32
VPS39-201ENST00000318006 DRC1Q96MC2 740 aa13.07□□□□□ -0.32
VPS39-201ENST00000318006 SLC26A6Q9BXS9 759 aa13.07□□□□□ -0.32
VPS39-201ENST00000318006 KRT86O43790 486 aa13.07□□□□□ -0.32
VPS39-201ENST00000318006 STAMBPO95630 424 aa13.07□□□□□ -0.32
VPS39-201ENST00000318006 PRPF4BQ13523 1007 aaKnown RBP13.07□□□□□ -0.32
VPS39-201ENST00000318006 CCDC129Q6ZRS4 1044 aa13.07□□□□□ -0.32
VPS39-201ENST00000318006 C17orf53Q8N3J3 647 aaPredicted RBP13.07□□□□□ -0.32
VPS39-201ENST00000318006 AFAP1L1Q8TED9 768 aa13.07□□□□□ -0.32
VPS39-201ENST00000318006 USP26Q9BXU7 913 aa13.07□□□□□ -0.32
VPS39-201ENST00000318006 RMND1Q9NWS8 449 aa13.07□□□□□ -0.32
VPS39-201ENST00000318006 DNAJC21Q5F1R6 531 aaKnown RBP13.06□□□□□ -0.32
VPS39-201ENST00000318006 ZNF569Q5MCW4 686 aa13.06□□□□□ -0.32
VPS39-201ENST00000318006 SLC9C2Q5TAH2 1124 aa13.06□□□□□ -0.32
VPS39-201ENST00000318006 HOOK3Q86VS8 718 aa13.06□□□□□ -0.32
VPS39-201ENST00000318006 LRRIQ1Q96JM4 1722 aa13.06□□□□□ -0.32
VPS39-201ENST00000318006 MYO1BO43795 1136 aa13.06□□□□□ -0.32
VPS39-201ENST00000318006 HSP90AA4PQ58FG1 418 aa13.06□□□□□ -0.32
VPS39-201ENST00000318006 ACSBG1Q96GR2 724 aa13.06□□□□□ -0.32
VPS39-201ENST00000318006 KRT23Q9C075 422 aa13.06□□□□□ -0.32
VPS39-201ENST00000318006 BICC1Q9H694 974 aaKnown RBP13.06□□□□□ -0.32
VPS39-201ENST00000318006 AMPD3Q01432 767 aa13.06□□□□□ -0.32
VPS39-201ENST00000318006 Q6ZUG5 572 aa13.06□□□□□ -0.32
VPS39-201ENST00000318006 CTNNBL1Q8WYA6 563 aaPredicted RBP13.06□□□□□ -0.32
VPS39-201ENST00000318006 TRIM47Q96LD4 638 aa13.06□□□□□ -0.32
VPS39-201ENST00000318006 CRNKL1Q9BZJ0 848 aaKnown RBP13.06□□□□□ -0.32
VPS39-201ENST00000318006 LZTFL1Q9NQ48 299 aa13.06□□□□□ -0.32
VPS39-201ENST00000318006 TMEM2Q9UHN6 1383 aa13.06□□□□□ -0.32
VPS39-201ENST00000318006 PLXNC1O60486 1568 aa13.06□□□□□ -0.32
VPS39-201ENST00000318006 PCDH11XQ9BZA7 1347 aa13.06□□□□□ -0.32
VPS39-201ENST00000318006 PCDH11YQ9BZA8 1340 aa13.06□□□□□ -0.32
VPS39-201ENST00000318006 ZBTB43O43298 467 aa13.06□□□□□ -0.32
VPS39-201ENST00000318006 WTAPQ15007 396 aa13.06□□□□□ -0.32
VPS39-201ENST00000318006 KIAA0753Q2KHM9 967 aa13.06□□□□□ -0.32
VPS39-201ENST00000318006 ZNF790Q6PG37 636 aa13.06□□□□□ -0.32
VPS39-201ENST00000318006 SIRT1Q96EB6 747 aa13.06□□□□□ -0.32
VPS39-201ENST00000318006 UTP14AQ9BVJ6 771 aaKnown RBP13.06□□□□□ -0.32
VPS39-201ENST00000318006 CPSF2Q9P2I0 782 aaKnown RBP13.06□□□□□ -0.32
VPS39-201ENST00000318006 CCDC40Q4G0X9 1142 aa13.05□□□□□ -0.32
VPS39-201ENST00000318006 CPLX4Q7Z7G2 160 aa13.05□□□□□ -0.32
VPS39-201ENST00000318006 KIF4AO95239 1232 aa13.05□□□□□ -0.32
VPS39-201ENST00000318006 CYP7A1P22680 504 aa13.05□□□□□ -0.32
VPS39-201ENST00000318006 TFCP2Q12800 502 aa13.05□□□□□ -0.32
VPS39-201ENST00000318006 DZIP3Q86Y13 1208 aaKnown RBP13.05□□□□□ -0.32
VPS39-201ENST00000318006 ORAI2Q96SN7 254 aa13.05□□□□□ -0.32
VPS39-201ENST00000318006 KAT14Q9H8E8 782 aa13.05□□□□□ -0.32
VPS39-201ENST00000318006 CNNM2Q9H8M5 875 aa13.05□□□□□ -0.32
VPS39-201ENST00000318006 NIP7Q9Y221 180 aaKnown RBP eCLIP13.05□□□□□ -0.32
VPS39-201ENST00000318006 RAD50Q92878 1312 aa13.05□□□□□ -0.32
VPS39-201ENST00000318006 INPP5BP32019 993 aa13.05□□□□□ -0.32
VPS39-201ENST00000318006 VAV2P52735 878 aa13.05□□□□□ -0.32
VPS39-201ENST00000318006 AK2P54819 239 aa13.05□□□□□ -0.32
VPS39-201ENST00000318006 TMTC2Q8N394 836 aa13.05□□□□□ -0.32
VPS39-201ENST00000318006 STMN4Q9H169 189 aaPredicted RBP13.05□□□□□ -0.32
VPS39-201ENST00000318006 YEATS2Q9ULM3 1422 aa13.05□□□□□ -0.32
VPS39-201ENST00000318006 KIF5AQ12840 1032 aa13.05□□□□□ -0.32
VPS39-201ENST00000318006 TMEM266Q2M3C6 531 aa13.05□□□□□ -0.32
VPS39-201ENST00000318006 RRAGBQ5VZM2 374 aa13.05□□□□□ -0.32
VPS39-201ENST00000318006 NLRP3Q96P20 1036 aa13.05□□□□□ -0.32
VPS39-201ENST00000318006 HSPA2P54652 639 aa13.04□□□□□ -0.32
VPS39-201ENST00000318006 CREB3L3Q68CJ9 461 aa13.04□□□□□ -0.32
VPS39-201ENST00000318006 A6NNZ2 444 aa13.04□□□□□ -0.32
VPS39-201ENST00000318006 DESP17661 470 aa13.04□□□□□ -0.32
VPS39-201ENST00000318006 TUBB2AQ13885 445 aa13.04□□□□□ -0.32
VPS39-201ENST00000318006 TUBB8Q3ZCM7 444 aa13.04□□□□□ -0.32
VPS39-201ENST00000318006 SETDB2Q96T68 719 aa13.04□□□□□ -0.32
VPS39-201ENST00000318006 TUBB2BQ9BVA1 445 aa13.04□□□□□ -0.32
VPS39-201ENST00000318006 ADCY10Q96PN6 1610 aa13.04□□□□□ -0.32
VPS39-201ENST00000318006 SPTLC2O15270 562 aa13.04□□□□□ -0.32
VPS39-201ENST00000318006 RNF113AO15541 343 aaKnown RBP13.04□□□□□ -0.32
VPS39-201ENST00000318006 SARNPP82979 210 aaKnown RBP13.04□□□□□ -0.32
VPS39-201ENST00000318006 DMTNQ08495 405 aa13.04□□□□□ -0.32
VPS39-201ENST00000318006 ESR2Q92731 530 aa13.04□□□□□ -0.32
VPS39-201ENST00000318006 SELENOOQ9BVL4 669 aa13.04□□□□□ -0.32
VPS39-201ENST00000318006 CEP83Q9Y592 693 aa13.04□□□□□ -0.32
VPS39-201ENST00000318006 SLC4A4Q9Y6R1 1079 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 81.4 ms