RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 TMC4Q7Z404 712 aa13.6□□□□□ -0.23
VPS4A-201ENST00000254950 CTCFLQ8NI51 663 aaPredicted RBP13.6□□□□□ -0.23
VPS4A-201ENST00000254950 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.6□□□□□ -0.23
VPS4A-201ENST00000254950 ZNF804BA4D1E1 1349 aa13.6□□□□□ -0.23
VPS4A-201ENST00000254950 CARMIL3Q8ND23 1372 aa13.59□□□□□ -0.23
VPS4A-201ENST00000254950 AK2P54819 239 aa13.59□□□□□ -0.23
VPS4A-201ENST00000254950 RUFY3Q7L099 469 aa13.59□□□□□ -0.23
VPS4A-201ENST00000254950 LEMD3Q9Y2U8 911 aa13.59□□□□□ -0.23
VPS4A-201ENST00000254950 Q6ZUG5 572 aa13.59□□□□□ -0.23
VPS4A-201ENST00000254950 C2CD5Q86YS7 1000 aa13.59□□□□□ -0.23
VPS4A-201ENST00000254950 BSDC1Q9NW68 430 aaPredicted RBP13.59□□□□□ -0.23
VPS4A-201ENST00000254950 SAMD1Q6SPF0 538 aaPredicted RBP13.59□□□□□ -0.23
VPS4A-201ENST00000254950 DSCC1Q9BVC3 393 aa13.59□□□□□ -0.23
VPS4A-201ENST00000254950 RGS12O14924 1447 aa13.59□□□□□ -0.23
VPS4A-201ENST00000254950 XDHP47989 1333 aa13.59□□□□□ -0.23
VPS4A-201ENST00000254950 KLF18A0A0U1RQI7 1052 aa13.58□□□□□ -0.23
VPS4A-201ENST00000254950 GOLGA6L6A8MZA4 724 aa13.58□□□□□ -0.23
VPS4A-201ENST00000254950 PRC1O43663 620 aa13.58□□□□□ -0.23
VPS4A-201ENST00000254950 HLA-DOAP06340 250 aa13.58□□□□□ -0.23
VPS4A-201ENST00000254950 MMP10P09238 476 aa13.58□□□□□ -0.23
VPS4A-201ENST00000254950 PDE6AP16499 860 aa13.58□□□□□ -0.23
VPS4A-201ENST00000254950 CATIPQ7Z7H3 387 aa13.58□□□□□ -0.23
VPS4A-201ENST00000254950 ARMT1Q9H993 441 aa13.58□□□□□ -0.23
VPS4A-201ENST00000254950 ATP2B1P20020 1258 aa13.58□□□□□ -0.24
VPS4A-201ENST00000254950 NFIXQ14938 502 aa13.58□□□□□ -0.24
VPS4A-201ENST00000254950 STK38Q15208 465 aa13.58□□□□□ -0.24
VPS4A-201ENST00000254950 NECAB1Q8N987 351 aa13.58□□□□□ -0.24
VPS4A-201ENST00000254950 CNKSR1Q969H4 720 aa13.58□□□□□ -0.24
VPS4A-201ENST00000254950 ROBO1Q9Y6N7 1651 aa13.58□□□□□ -0.24
VPS4A-201ENST00000254950 SMIM5Q71RC9 77 aa13.58□□□□□ -0.24
VPS4A-201ENST00000254950 FERMT3Q86UX7 667 aa13.58□□□□□ -0.24
VPS4A-201ENST00000254950 MICU3Q86XE3 530 aa13.58□□□□□ -0.24
VPS4A-201ENST00000254950 TMTC2Q8N394 836 aa13.58□□□□□ -0.24
VPS4A-201ENST00000254950 OGFOD1Q8N543 542 aa13.58□□□□□ -0.24
VPS4A-201ENST00000254950 TBC1D22AQ8WUA7 517 aa13.58□□□□□ -0.24
VPS4A-201ENST00000254950 GJB2P29033 226 aa13.58□□□□□ -0.24
VPS4A-201ENST00000254950 GRAPQ13588 217 aa13.58□□□□□ -0.24
VPS4A-201ENST00000254950 GRAPLQ8TC17 118 aaPredicted RBP13.58□□□□□ -0.24
VPS4A-201ENST00000254950 HDAC9Q9UKV0 1011 aa13.58□□□□□ -0.24
VPS4A-201ENST00000254950 CSF1RP07333 972 aa13.57□□□□□ -0.24
VPS4A-201ENST00000254950 WTAPQ15007 396 aa13.57□□□□□ -0.24
VPS4A-201ENST00000254950 SEC62Q99442 399 aaKnown RBP13.57□□□□□ -0.24
VPS4A-201ENST00000254950 MCM9Q9NXL9 1143 aa13.57□□□□□ -0.24
VPS4A-201ENST00000254950 MPHOSPH10O00566 681 aaKnown RBP13.57□□□□□ -0.24
VPS4A-201ENST00000254950 C8orf76Q96K31 380 aa13.57□□□□□ -0.24
VPS4A-201ENST00000254950 WWC3Q9ULE0 1092 aa13.57□□□□□ -0.24
VPS4A-201ENST00000254950 SEMA3EO15041 775 aa13.57□□□□□ -0.24
VPS4A-201ENST00000254950 CPA1P15085 419 aa13.57□□□□□ -0.24
VPS4A-201ENST00000254950 METAP2P50579 478 aaKnown RBP eCLIP13.57□□□□□ -0.249e-6■■■■□ 23.9
VPS4A-201ENST00000254950 PTH1RQ03431 593 aa13.57□□□□□ -0.24
VPS4A-201ENST00000254950 SUPT20HQ8NEM7 779 aa13.57□□□□□ -0.24
VPS4A-201ENST00000254950 TM6SF1Q9BZW5 370 aa13.57□□□□□ -0.24
VPS4A-201ENST00000254950 UBE3CQ15386 1083 aa13.56□□□□□ -0.24
VPS4A-201ENST00000254950 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.56□□□□□ -0.24
VPS4A-201ENST00000254950 CFAP45Q9UL16 551 aa13.56□□□□□ -0.24
VPS4A-201ENST00000254950 PHLPP1O60346 1717 aa13.56□□□□□ -0.24
VPS4A-201ENST00000254950 CEBPZQ03701 1054 aaKnown RBP13.56□□□□□ -0.24
VPS4A-201ENST00000254950 SLC4A8Q2Y0W8 1093 aa13.56□□□□□ -0.24
VPS4A-201ENST00000254950 ZMYM1Q5SVZ6 1142 aa13.56□□□□□ -0.24
VPS4A-201ENST00000254950 JMYQ8N9B5 988 aa13.56□□□□□ -0.24
VPS4A-201ENST00000254950 JDP2Q8WYK2 163 aa13.56□□□□□ -0.24
VPS4A-201ENST00000254950 ZBTB43O43298 467 aa13.56□□□□□ -0.24
VPS4A-201ENST00000254950 STX6O43752 255 aa13.56□□□□□ -0.24
VPS4A-201ENST00000254950 RPS6KB1P23443 525 aa13.56□□□□□ -0.24
VPS4A-201ENST00000254950 TPM4P67936 248 aa13.56□□□□□ -0.24
VPS4A-201ENST00000254950 CERS3Q8IU89 383 aa13.56□□□□□ -0.24
VPS4A-201ENST00000254950 TNPO1Q92973 898 aaKnown RBP13.56□□□□□ -0.24
VPS4A-201ENST00000254950 KAZALD1Q96I82 304 aa13.56□□□□□ -0.24
VPS4A-201ENST00000254950 ORC3Q9UBD5 711 aaPredicted RBP13.56□□□□□ -0.24
VPS4A-201ENST00000254950 ATG9AQ7Z3C6 839 aa13.55□□□□□ -0.24
VPS4A-201ENST00000254950 INTS4Q96HW7 963 aaKnown RBP13.55□□□□□ -0.24
VPS4A-201ENST00000254950 NRDCO43847 1150 aa13.55□□□□□ -0.24
VPS4A-201ENST00000254950 IARSP41252 1262 aaKnown RBP13.55□□□□□ -0.24
VPS4A-201ENST00000254950 SOGA3Q5TF21 947 aa13.55□□□□□ -0.24
VPS4A-201ENST00000254950 CCDC82Q8N4S0 544 aa13.55□□□□□ -0.24
VPS4A-201ENST00000254950 ANTXR1Q9H6X2 564 aa13.55□□□□□ -0.24
VPS4A-201ENST00000254950 MAST3O60307 1309 aa13.55□□□□□ -0.24
VPS4A-201ENST00000254950 PPEF1O14829 653 aaPredicted RBP13.55□□□□□ -0.24
VPS4A-201ENST00000254950 NTSR2O95665 410 aa13.55□□□□□ -0.24
VPS4A-201ENST00000254950 CAVIN1Q6NZI2 390 aaKnown RBP13.55□□□□□ -0.24
VPS4A-201ENST00000254950 TICAM2Q86XR7 235 aa13.55□□□□□ -0.24
VPS4A-201ENST00000254950 TEX11Q8IYF3 940 aa13.55□□□□□ -0.24
VPS4A-201ENST00000254950 LSG1Q9H089 658 aaKnown RBP13.55□□□□□ -0.24
VPS4A-201ENST00000254950 DCAF8L1A6NGE4 600 aa13.54□□□□□ -0.24
VPS4A-201ENST00000254950 RFX5P48382 616 aaPredicted RBP13.54□□□□□ -0.24
VPS4A-201ENST00000254950 CCDC178Q5BJE1 867 aa13.54□□□□□ -0.24
VPS4A-201ENST00000254950 CHST3Q7LGC8 479 aa13.54□□□□□ -0.24
VPS4A-201ENST00000254950 CELF1Q92879 486 aaKnown RBP13.54□□□□□ -0.24
VPS4A-201ENST00000254950 SLC4A9Q96Q91 983 aa13.54□□□□□ -0.24
VPS4A-201ENST00000254950 RIPOR2Q9Y4F9 1068 aa13.54□□□□□ -0.24
VPS4A-201ENST00000254950 SF3B3Q15393 1217 aaKnown RBP13.54□□□□□ -0.24
VPS4A-201ENST00000254950 PI16Q6UXB8 463 aa13.54□□□□□ -0.24
VPS4A-201ENST00000254950 RAB11FIP4Q86YS3 637 aa13.54□□□□□ -0.24
VPS4A-201ENST00000254950 DRC7Q8IY82 874 aa13.54□□□□□ -0.24
VPS4A-201ENST00000254950 MAP4K1Q92918 833 aa13.54□□□□□ -0.24
VPS4A-201ENST00000254950 HOOK1Q9UJC3 728 aaKnown RBP13.54□□□□□ -0.24
VPS4A-201ENST00000254950 COL14A1Q05707 1796 aaKnown RBP13.54□□□□□ -0.24
VPS4A-201ENST00000254950 HSPD1P10809 573 aaKnown RBP13.54□□□□□ -0.24
VPS4A-201ENST00000254950 KIF5BP33176 963 aa13.54□□□□□ -0.24
VPS4A-201ENST00000254950 SSRP1Q08945 709 aaKnown RBP13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms