RNA–Protein interactions for RNA: ENST00000252816.10

LSM4-201, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2 BASIC

Gene LSM4, Length 986 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-201ENST00000252816 MTX1Q13505 466 aa28.62■■■□□ 2.17
LSM4-201ENST00000252816 PUM3Q15397 648 aaKnown RBP28.62■■■□□ 2.17
LSM4-201ENST00000252816 ZNF408Q9H9D4 720 aa28.62■■■□□ 2.17
LSM4-201ENST00000252816 FAM205AQ6ZU69 1335 aa28.62■■■□□ 2.17
LSM4-201ENST00000252816 SRGAP3O43295 1099 aa28.61■■■□□ 2.17
LSM4-201ENST00000252816 FKBP1AP62942 108 aaKnown RBP28.61■■■□□ 2.17
LSM4-201ENST00000252816 FTSJ3Q8IY81 847 aaKnown RBP28.61■■■□□ 2.17
LSM4-201ENST00000252816 WNT10BO00744 389 aa28.6■■■□□ 2.17
LSM4-201ENST00000252816 VEGFBP49765 207 aa28.6■■■□□ 2.17
LSM4-201ENST00000252816 MMP14P50281 582 aa28.6■■■□□ 2.17
LSM4-201ENST00000252816 DEFB115Q30KQ5 88 aa28.6■■■□□ 2.17
LSM4-201ENST00000252816 SULF1Q8IWU6 871 aa28.6■■■□□ 2.17
LSM4-201ENST00000252816 HDAC9Q9UKV0 1011 aa28.6■■■□□ 2.17
LSM4-201ENST00000252816 IQSEC3Q9UPP2 1182 aaPredicted RBP28.6■■■□□ 2.17
LSM4-201ENST00000252816 BCAMP50895 628 aa28.59■■■□□ 2.17
LSM4-201ENST00000252816 CAVIN4Q5BKX8 364 aa28.59■■■□□ 2.17
LSM4-201ENST00000252816 VPS37DQ86XT2 251 aa28.59■■■□□ 2.17
LSM4-201ENST00000252816 TLL2Q9Y6L7 1015 aa28.59■■■□□ 2.17
LSM4-201ENST00000252816 F8W031 263 aaPredicted RBP28.58■■■□□ 2.17
LSM4-201ENST00000252816 IFIT1P09914 478 aaKnown RBP28.58■■■□□ 2.17
LSM4-201ENST00000252816 LPIN2Q92539 896 aa28.58■■■□□ 2.17
LSM4-201ENST00000252816 ZBED3Q96IU2 234 aaPredicted RBP28.58■■■□□ 2.17
LSM4-201ENST00000252816 CEP126Q9P2H0 1117 aa28.58■■■□□ 2.17
LSM4-201ENST00000252816 SCAF8Q9UPN6 1271 aaKnown RBP28.58■■■□□ 2.17
LSM4-201ENST00000252816 IL15P40933 162 aaPredicted RBP28.57■■■□□ 2.16
LSM4-201ENST00000252816 ITPRIPQ8IWB1 547 aa28.57■■■□□ 2.16
LSM4-201ENST00000252816 PITPNM2Q9BZ72 1349 aa28.57■■■□□ 2.16
LSM4-201ENST00000252816 SLC5A1P13866 664 aa28.56■■■□□ 2.16
LSM4-201ENST00000252816 MFSD14BQ5SR56 506 aa28.56■■■□□ 2.16
LSM4-201ENST00000252816 SAPCD2Q86UD0 394 aa28.56■■■□□ 2.16
LSM4-201ENST00000252816 PCDHAC2Q9Y5I4 1007 aa28.56■■■□□ 2.16
LSM4-201ENST00000252816 PNMA6EA0A0J9YXQ4 647 aa28.55■■■□□ 2.16
LSM4-201ENST00000252816 PANK1Q8TE04 598 aa28.55■■■□□ 2.16
LSM4-201ENST00000252816 ZBTB7BO15156 539 aaPredicted RBP28.54■■■□□ 2.16
LSM4-201ENST00000252816 CHAF1AQ13111 956 aaPredicted RBP28.54■■■□□ 2.16
LSM4-201ENST00000252816 ATP2B3Q16720 1220 aa28.54■■■□□ 2.16
LSM4-201ENST00000252816 CDCA5Q96FF9 252 aa28.54■■■□□ 2.16
LSM4-201ENST00000252816 MTMR14Q8NCE2 650 aa28.53■■■□□ 2.16
LSM4-201ENST00000252816 C1orf115Q9H7X2 142 aa28.53■■■□□ 2.16
LSM4-201ENST00000252816 WDR33Q9C0J8 1336 aaKnown RBP28.52■■■□□ 2.16
LSM4-201ENST00000252816 FRAT2O75474 233 aaPredicted RBP28.52■■■□□ 2.16
LSM4-201ENST00000252816 DLGAP5Q15398 846 aa28.52■■■□□ 2.16
LSM4-201ENST00000252816 GRIK5Q16478 980 aa28.52■■■□□ 2.16
LSM4-201ENST00000252816 CFAP100Q494V2 611 aa28.52■■■□□ 2.16
LSM4-201ENST00000252816 RCAN3Q9UKA8 241 aa28.52■■■□□ 2.16
LSM4-201ENST00000252816 CYP4F22Q6NT55 531 aa28.51■■■□□ 2.15
LSM4-201ENST00000252816 CAPNS2Q96L46 248 aa28.51■■■□□ 2.15
LSM4-201ENST00000252816 AOX1Q06278 1338 aa28.5■■■□□ 2.15
LSM4-201ENST00000252816 PAXIP1Q6ZW49 1069 aaPredicted RBP28.5■■■□□ 2.15
LSM4-201ENST00000252816 GBA2Q9HCG7 927 aaPredicted RBP28.5■■■□□ 2.15
LSM4-201ENST00000252816 TTF2Q9UNY4 1162 aaKnown RBP28.5■■■□□ 2.15
LSM4-201ENST00000252816 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP28.5■■■□□ 2.15
LSM4-201ENST00000252816 SPDYE2BA6NHP3 402 aa28.49■■■□□ 2.15
LSM4-201ENST00000252816 SPDYE6P0CI01 402 aa28.49■■■□□ 2.15
LSM4-201ENST00000252816 HSPA1AP0DMV8 641 aaKnown RBP28.49■■■□□ 2.15
LSM4-201ENST00000252816 HSPA1BP0DMV9 641 aaKnown RBP28.49■■■□□ 2.15
LSM4-201ENST00000252816 PRAMEF18Q5VWM3 479 aa28.49■■■□□ 2.15
LSM4-201ENST00000252816 PRMT6Q96LA8 375 aaPredicted RBP28.49■■■□□ 2.15
LSM4-201ENST00000252816 ADORA1P30542 326 aa28.48■■■□□ 2.15
LSM4-201ENST00000252816 TFCP2Q12800 502 aa28.48■■■□□ 2.15
LSM4-201ENST00000252816 POLA2Q14181 598 aa28.48■■■□□ 2.15
LSM4-201ENST00000252816 HHIPL1Q96JK4 782 aa28.48■■■□□ 2.15
LSM4-201ENST00000252816 ARAP2Q8WZ64 1704 aa28.48■■■□□ 2.15
LSM4-201ENST00000252816 COL1A1P02452 1464 aaPredicted RBP28.47■■■□□ 2.15
LSM4-201ENST00000252816 HUNKP57058 714 aa28.47■■■□□ 2.15
LSM4-201ENST00000252816 ATP8B2P98198 1209 aa28.47■■■□□ 2.15
LSM4-201ENST00000252816 GRM1Q13255 1194 aa28.47■■■□□ 2.15
LSM4-201ENST00000252816 C2orf69Q8N8R5 385 aa28.47■■■□□ 2.15
LSM4-201ENST00000252816 TBC1D22AQ8WUA7 517 aa28.47■■■□□ 2.15
LSM4-201ENST00000252816 ECE1P42892 770 aa28.46■■■□□ 2.15
LSM4-201ENST00000252816 PHKA1P46020 1223 aa28.46■■■□□ 2.15
LSM4-201ENST00000252816 TIMM10P62072 90 aa28.46■■■□□ 2.15
LSM4-201ENST00000252816 APOBEC3FQ8IUX4 373 aaKnown RBP28.46■■■□□ 2.15
LSM4-201ENST00000252816 SSH3Q8TE77 659 aa28.46■■■□□ 2.15
LSM4-201ENST00000252816 RBM5P52756 815 aaKnown RBP eCLIP28.45■■■□□ 2.14
LSM4-201ENST00000252816 SERPINA10Q9UK55 444 aa28.45■■■□□ 2.14
LSM4-201ENST00000252816 CLRN2A0PK11 232 aa28.44■■■□□ 2.14
LSM4-201ENST00000252816 MS4A1P11836 297 aa28.44■■■□□ 2.14
LSM4-201ENST00000252816 A0A1B0GUL7 405 aa28.43■■■□□ 2.14
LSM4-201ENST00000252816 AOC2O75106 756 aa28.43■■■□□ 2.14
LSM4-201ENST00000252816 CRKP46108 304 aa28.43■■■□□ 2.14
LSM4-201ENST00000252816 G3BP1Q13283 466 aaKnown RBP eCLIP28.43■■■□□ 2.14
LSM4-201ENST00000252816 AKAP2Q9Y2D5 859 aa28.43■■■□□ 2.14
LSM4-201ENST00000252816 CCDC102BQ68D86 513 aa28.42■■■□□ 2.14
LSM4-201ENST00000252816 GNL3LQ9NVN8 582 aaKnown RBP28.42■■■□□ 2.14
LSM4-201ENST00000252816 THSD7BQ9C0I4 1608 aa28.41■■■□□ 2.14
LSM4-201ENST00000252816 MYO1BO43795 1136 aa28.41■■■□□ 2.14
LSM4-201ENST00000252816 WDR66Q8TBY9 1149 aa28.41■■■□□ 2.14
LSM4-201ENST00000252816 XAGE2Q96GT9 111 aa28.41■■■□□ 2.14
LSM4-201ENST00000252816 DEFB129Q9H1M3 183 aa28.41■■■□□ 2.14
LSM4-201ENST00000252816 MVPQ14764 893 aaKnown RBP28.4■■■□□ 2.14
LSM4-201ENST00000252816 CEP85Q6P2H3 762 aa28.4■■■□□ 2.14
LSM4-201ENST00000252816 MOB2Q70IA6 237 aa28.4■■■□□ 2.14
LSM4-201ENST00000252816 VEZTQ9HBM0 779 aa28.4■■■□□ 2.14
LSM4-201ENST00000252816 WBP1LQ9NX94 342 aa28.4■■■□□ 2.14
LSM4-201ENST00000252816 COG6Q9Y2V7 657 aa28.4■■■□□ 2.14
LSM4-201ENST00000252816 SUGT1Q9Y2Z0 365 aa28.4■■■□□ 2.14
LSM4-201ENST00000252816 ECM29Q5VYK3 1845 aa28.4■■■□□ 2.14
LSM4-201ENST00000252816 HDLBPQ00341 1268 aaKnown RBP28.39■■■□□ 2.14
LSM4-201ENST00000252816 SPDYE2Q495Y8 402 aa28.39■■■□□ 2.14
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms