RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 TM6SF1Q9BZW5 370 aa15.82■□□□□ 0.12
LDLR-201ENST00000252444 USP16Q9Y5T5 823 aa15.82■□□□□ 0.12
LDLR-201ENST00000252444 NLRP5P59047 1200 aa15.82■□□□□ 0.12
LDLR-201ENST00000252444 NKX1-1Q15270 411 aaPredicted RBP15.82■□□□□ 0.12
LDLR-201ENST00000252444 NFKBIBQ15653 356 aa15.82■□□□□ 0.12
LDLR-201ENST00000252444 PPP1R12BO60237 982 aaPredicted RBP15.82■□□□□ 0.12
LDLR-201ENST00000252444 OSBPL3Q9H4L5 887 aa15.82■□□□□ 0.12
LDLR-201ENST00000252444 NUP62CLQ9H1M0 184 aa15.81■□□□□ 0.12
LDLR-201ENST00000252444 IQSEC2Q5JU85 1478 aa15.81■□□□□ 0.12
LDLR-201ENST00000252444 RBM25P49756 843 aaKnown RBP15.81■□□□□ 0.12
LDLR-201ENST00000252444 CCDC83Q8IWF9 413 aa15.81■□□□□ 0.12
LDLR-201ENST00000252444 USP44Q9H0E7 712 aa15.81■□□□□ 0.12
LDLR-201ENST00000252444 SPATA5Q8NB90 893 aa15.81■□□□□ 0.12
LDLR-201ENST00000252444 ZNF142P52746 1687 aaPredicted RBP15.81■□□□□ 0.12
LDLR-201ENST00000252444 MAGEB6Q8N7X4 407 aa15.81■□□□□ 0.12
LDLR-201ENST00000252444 PA2G4Q9UQ80 394 aaKnown RBP15.8■□□□□ 0.12
LDLR-201ENST00000252444 SPATA31A5Q5VU36 1347 aa15.8■□□□□ 0.12
LDLR-201ENST00000252444 SPATA31A7Q8IWB4 1347 aa15.8■□□□□ 0.12
LDLR-201ENST00000252444 TRIM28Q13263 835 aaKnown RBP15.8■□□□□ 0.12
LDLR-201ENST00000252444 BRAPQ7Z569 592 aa15.8■□□□□ 0.12
LDLR-201ENST00000252444 GOLGA6L1Q8N7Z2 621 aa15.8■□□□□ 0.12
LDLR-201ENST00000252444 C6orf50Q9HD87 102 aa15.8■□□□□ 0.12
LDLR-201ENST00000252444 SNRKQ9NRH2 765 aa15.8■□□□□ 0.12
LDLR-201ENST00000252444 NARFQ9UHQ1 456 aa15.8■□□□□ 0.12
LDLR-201ENST00000252444 CARMIL3Q8ND23 1372 aa15.79■□□□□ 0.12
LDLR-201ENST00000252444 FIBPO43427 364 aa15.79■□□□□ 0.12
LDLR-201ENST00000252444 RDXP35241 583 aaKnown RBP15.79■□□□□ 0.12
LDLR-201ENST00000252444 PIGBQ92521 554 aa15.79■□□□□ 0.12
LDLR-201ENST00000252444 TSG101Q99816 390 aa15.79■□□□□ 0.12
LDLR-201ENST00000252444 ANKRD26Q9UPS8 1709 aa15.79■□□□□ 0.12
LDLR-201ENST00000252444 MTX1Q13505 466 aa15.79■□□□□ 0.12
LDLR-201ENST00000252444 CREBRFQ8IUR6 639 aa15.79■□□□□ 0.12
LDLR-201ENST00000252444 ARHGEF10LQ9HCE6 1279 aa15.79■□□□□ 0.12
LDLR-201ENST00000252444 NPR1P16066 1061 aa15.79■□□□□ 0.12
LDLR-201ENST00000252444 GNA11P29992 359 aa15.79■□□□□ 0.12
LDLR-201ENST00000252444 KCNG4Q8TDN1 519 aa15.79■□□□□ 0.12
LDLR-201ENST00000252444 PRPF40AO75400 957 aaKnown RBP15.78■□□□□ 0.12
LDLR-201ENST00000252444 SLC4A3P48751 1232 aa15.78■□□□□ 0.12
LDLR-201ENST00000252444 CREB3L3Q68CJ9 461 aa15.78■□□□□ 0.12
LDLR-201ENST00000252444 RRP36Q96EU6 259 aaKnown RBP15.78■□□□□ 0.12
LDLR-201ENST00000252444 CALML4Q96GE6 196 aa15.78■□□□□ 0.12
LDLR-201ENST00000252444 MTMR7Q9Y216 660 aa15.78■□□□□ 0.12
LDLR-201ENST00000252444 TTLL12Q14166 644 aaPredicted RBP15.78■□□□□ 0.12
LDLR-201ENST00000252444 TCP11L1Q9NUJ3 509 aa15.78■□□□□ 0.12
LDLR-201ENST00000252444 ORC3Q9UBD5 711 aaPredicted RBP15.78■□□□□ 0.12
LDLR-201ENST00000252444 CCDC173Q0VFZ6 552 aa15.78■□□□□ 0.12
LDLR-201ENST00000252444 UBE3CQ15386 1083 aa15.78■□□□□ 0.12
LDLR-201ENST00000252444 RUFY3Q7L099 469 aa15.78■□□□□ 0.12
LDLR-201ENST00000252444 HAUS7Q99871 368 aa15.78■□□□□ 0.12
LDLR-201ENST00000252444 ZNHIT6Q9NWK9 470 aaKnown RBP15.78■□□□□ 0.12
LDLR-201ENST00000252444 RMND1Q9NWS8 449 aa15.78■□□□□ 0.12
LDLR-201ENST00000252444 CYP27B1O15528 508 aa15.78■□□□□ 0.12
LDLR-201ENST00000252444 CCDC183Q5T5S1 534 aa15.78■□□□□ 0.12
LDLR-201ENST00000252444 TEX11Q8IYF3 940 aa15.78■□□□□ 0.12
LDLR-201ENST00000252444 STX6O43752 255 aa15.77■□□□□ 0.12
LDLR-201ENST00000252444 ANO10Q9NW15 660 aa15.77■□□□□ 0.12
LDLR-201ENST00000252444 COL15A1P39059 1388 aa15.77■□□□□ 0.12
LDLR-201ENST00000252444 FOSBP53539 338 aa15.77■□□□□ 0.12
LDLR-201ENST00000252444 PRC1O43663 620 aa15.77■□□□□ 0.11
LDLR-201ENST00000252444 MAP3K11Q16584 847 aa15.77■□□□□ 0.11
LDLR-201ENST00000252444 C2CD5Q86YS7 1000 aa15.77■□□□□ 0.11
LDLR-201ENST00000252444 RTKN2Q8IZC4 609 aa15.77■□□□□ 0.11
LDLR-201ENST00000252444 FMN2Q9NZ56 1722 aa15.77■□□□□ 0.11
LDLR-201ENST00000252444 KLF18A0A0U1RQI7 1052 aa15.76■□□□□ 0.11
LDLR-201ENST00000252444 MYO3BQ8WXR4 1341 aa15.76■□□□□ 0.11
LDLR-201ENST00000252444 H7C1W4 665 aa15.76■□□□□ 0.11
LDLR-201ENST00000252444 MCM4P33991 863 aa15.76■□□□□ 0.11
LDLR-201ENST00000252444 PPP1R2P41236 205 aa15.76■□□□□ 0.11
LDLR-201ENST00000252444 HCLS1P14317 486 aaPredicted RBP15.76■□□□□ 0.11
LDLR-201ENST00000252444 SGSM2O43147 1006 aa15.76■□□□□ 0.11
LDLR-201ENST00000252444 ASAP1Q9ULH1 1129 aa15.76■□□□□ 0.11
LDLR-201ENST00000252444 NLRP10Q86W26 655 aa15.75■□□□□ 0.11
LDLR-201ENST00000252444 PLA2G12BQ9BX93 195 aa15.75■□□□□ 0.11
LDLR-201ENST00000252444 CNTNAP4Q9C0A0 1308 aa15.75■□□□□ 0.11
LDLR-201ENST00000252444 PPEF1O14829 653 aaPredicted RBP15.75■□□□□ 0.11
LDLR-201ENST00000252444 ADAMTSL3P82987 1691 aa15.75■□□□□ 0.11
LDLR-201ENST00000252444 NWD1Q149M9 1564 aa15.75■□□□□ 0.11
LDLR-201ENST00000252444 SAMD1Q6SPF0 538 aaPredicted RBP15.75■□□□□ 0.11
LDLR-201ENST00000252444 MCM9Q9NXL9 1143 aa15.75■□□□□ 0.11
LDLR-201ENST00000252444 CCDC125Q86Z20 511 aa15.75■□□□□ 0.11
LDLR-201ENST00000252444 FAM114A1Q8IWE2 563 aa15.75■□□□□ 0.11
LDLR-201ENST00000252444 LARGE2Q8N3Y3 721 aa15.75■□□□□ 0.11
LDLR-201ENST00000252444 GJB2P29033 226 aa15.75■□□□□ 0.11
LDLR-201ENST00000252444 C16orf71Q8IYS4 520 aaPredicted RBP15.75■□□□□ 0.11
LDLR-201ENST00000252444 NAP1L5Q96NT1 182 aaPredicted RBP15.75■□□□□ 0.11
LDLR-201ENST00000252444 DESP17661 470 aa15.75■□□□□ 0.11
LDLR-201ENST00000252444 POLA2Q14181 598 aa15.75■□□□□ 0.11
LDLR-201ENST00000252444 AS3MTQ9HBK9 375 aa15.75■□□□□ 0.11
LDLR-201ENST00000252444 USPL1Q5W0Q7 1092 aa15.74■□□□□ 0.11
LDLR-201ENST00000252444 DCAF15Q66K64 600 aa15.74■□□□□ 0.11
LDLR-201ENST00000252444 USP26Q9BXU7 913 aa15.74■□□□□ 0.11
LDLR-201ENST00000252444 CEMIPQ8WUJ3 1361 aa15.74■□□□□ 0.11
LDLR-201ENST00000252444 NASPP49321 788 aaPredicted RBP15.74■□□□□ 0.11
LDLR-201ENST00000252444 MBD4O95243 580 aa15.74■□□□□ 0.11
LDLR-201ENST00000252444 TMEM132AQ24JP5 1023 aa15.74■□□□□ 0.11
LDLR-201ENST00000252444 TEKT1Q969V4 418 aa15.74■□□□□ 0.11
LDLR-201ENST00000252444 SWAP70Q9UH65 585 aa15.74■□□□□ 0.11
LDLR-201ENST00000252444 SIGLEC1Q9BZZ2 1709 aa15.74■□□□□ 0.11
LDLR-201ENST00000252444 PDE8BO95263 885 aa15.74■□□□□ 0.11
LDLR-201ENST00000252444 GRAPQ13588 217 aa15.74■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms