RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 LRRC3CA6NJW4 275 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 A8MT66 165 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 GAS1P54826 345 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 ACTL10Q5JWF8 245 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 NT5CQ8TCD5 201 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 FAM173AQ9BQD7 235 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 LRTM1Q9HBL6 345 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 SLC7A10Q9NS82 523 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 FOXA2Q9Y261 457 aaPredicted RBP3.14□□□□□ -1.91
SCN1A-221ENST00000641996 ENPP4Q9Y6X5 453 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 BORCS7-ASMTA0A0B4J1R7 106 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 C7orf77A4D0Y5 90 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 FAM159BA6NKW6 160 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 HRASP01112 189 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 KRASP01116 189 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 IL6RP08887 468 aaPredicted RBP3.14□□□□□ -1.91
SCN1A-221ENST00000641996 ZFP36L2P47974 494 aaKnown RBP3.14□□□□□ -1.91
SCN1A-221ENST00000641996 ZNF92Q03936 586 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 FAM231DQ6ZW35 169 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 HIST3H2BBQ8N257 126 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 SCAMP4Q969E2 229 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 S1PR3Q99500 378 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 PLXNA3P51805 1871 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 FAM220BPB1ANY3 271 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 NRASP01111 189 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 PVRP15151 417 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 CXCL3P19876 107 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 RPS14P62263 151 aaKnown RBP3.14□□□□□ -1.91
SCN1A-221ENST00000641996 HBG2P69892 147 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 UNC119Q13432 240 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 TRAPPC6BQ86SZ2 158 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 LRRC75A-AS1Q8N1F1 130 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 OR10P1Q8NGE3 313 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 RND1Q92730 232 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 SEC22AQ96IW7 307 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 FOXC2Q99958 501 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 MRPL17Q9NRX2 175 aaKnown RBP3.14□□□□□ -1.91
SCN1A-221ENST00000641996 MYO5CQ9NQX4 1742 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP3.14□□□□□ -1.91
SCN1A-221ENST00000641996 SERINC4A6NH21 518 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 CCDC179H3BU77 68 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 ZFAND5O76080 213 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 HSD17B1P14061 328 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 PPIFP30405 207 aaKnown RBP3.14□□□□□ -1.91
SCN1A-221ENST00000641996 CACNG7P62955 275 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 SIX1Q15475 284 aaPredicted RBP3.14□□□□□ -1.91
SCN1A-221ENST00000641996 WFDC11Q8NEX6 87 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 TEPSINQ96N21 525 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 RTP3Q9BQQ7 232 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 PRSS16Q9NQE7 514 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 PHPT1Q9NRX4 125 aaPredicted RBP3.14□□□□□ -1.91
SCN1A-221ENST00000641996 ZNF337Q9Y3M9 751 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 LAMB1P07942 1786 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 A0A087WUJ7 227 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 FOXI3A8MTJ6 420 aaPredicted RBP3.13□□□□□ -1.91
SCN1A-221ENST00000641996 ZBTB42B2RXF5 422 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 TMEM262E9PQX1 116 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 FZD7O75084 574 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 SNAI1O95863 264 aaPredicted RBP3.13□□□□□ -1.91
SCN1A-221ENST00000641996 FGF5P12034 268 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 MPZP25189 248 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 BACE1P56817 501 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 C8orf86Q6ZUL3 223 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 PRSS48Q7RTY5 328 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 CA13Q8N1Q1 262 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 MRPL24Q96A35 216 aaKnown RBP3.13□□□□□ -1.91
SCN1A-221ENST00000641996 CDX2Q99626 313 aaPredicted RBP3.13□□□□□ -1.91
SCN1A-221ENST00000641996 TMEM147Q9BVK8 224 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 TMEM59Q9BXS4 323 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 LRRC3Q9BY71 257 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 ADAMTSL1Q8N6G6 1762 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 A6NIN4 97 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 GPR75O95800 540 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 CELA3BP08861 270 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 ZNF19P17023 458 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 MTNR1BP49286 362 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 RPS4XP62701 263 aaKnown RBP3.13□□□□□ -1.91
SCN1A-221ENST00000641996 GGTLC2Q14390 218 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 SERTAD4-AS1Q5TG53 156 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 LIAT1Q6ZQX7 453 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 C15orf39Q6ZRI6 1047 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 TRAPPC1Q9Y5R8 145 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 MS4A18H0YCH9 400 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 NBEAP1P0C6P0 100 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 AMY2BP19961 511 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 CDKN1AP38936 164 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 KIR2DL3P43628 341 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 BCL2L1Q07817 233 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 MIDNQ504T8 468 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 SHISA6Q6ZSJ9 500 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 TWIST2Q8WVJ9 160 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 DCBLD2Q96PD2 775 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 GPR20Q99678 358 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 OR2T8A6NH00 312 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 MYOD1P15172 320 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 CD58P19256 250 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 ELAVL4P26378 380 aaKnown RBP3.13□□□□□ -1.91
SCN1A-221ENST00000641996 SLC25A53Q5H9E4 307 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 DLEU7Q6UYE1 221 aa3.13□□□□□ -1.91
SCN1A-221ENST00000641996 MON1BQ7L1V2 547 aa3.13□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms