RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 EXTL2Q9UBQ6 330 aa4.41□□□□□ -1.7
SCN1A-218ENST00000640036 NKX1-2Q9UD57 310 aaPredicted RBP4.41□□□□□ -1.7
SCN1A-218ENST00000640036 SIRT4Q9Y6E7 314 aaPredicted RBP4.41□□□□□ -1.7
SCN1A-218ENST00000640036 A0A1W2PNV4 684 aa4.41□□□□□ -1.7
SCN1A-218ENST00000640036 NDUFS8O00217 210 aa4.41□□□□□ -1.7
SCN1A-218ENST00000640036 ARNTLO00327 626 aa4.41□□□□□ -1.7
SCN1A-218ENST00000640036 CYR61O00622 381 aa4.41□□□□□ -1.7
SCN1A-218ENST00000640036 WNT9BO14905 357 aa4.41□□□□□ -1.7
SCN1A-218ENST00000640036 SIX6O95475 246 aa4.41□□□□□ -1.7
SCN1A-218ENST00000640036 CD40P25942 277 aa4.41□□□□□ -1.7
SCN1A-218ENST00000640036 HTR2CP28335 458 aa4.41□□□□□ -1.7
SCN1A-218ENST00000640036 RAB40BQ12829 278 aa4.41□□□□□ -1.7
SCN1A-218ENST00000640036 CD226Q15762 336 aa4.41□□□□□ -1.7
SCN1A-218ENST00000640036 RNF220Q5VTB9 566 aa4.41□□□□□ -1.7
SCN1A-218ENST00000640036 OSR2Q8N2R0 312 aa4.41□□□□□ -1.7
SCN1A-218ENST00000640036 ZNF383Q8NA42 475 aa4.41□□□□□ -1.7
SCN1A-218ENST00000640036 TMEM255BQ8WV15 326 aa4.41□□□□□ -1.7
SCN1A-218ENST00000640036 RNF141Q8WVD5 230 aa4.41□□□□□ -1.7
SCN1A-218ENST00000640036 CNRIP1Q96F85 164 aaPredicted RBP4.41□□□□□ -1.7
SCN1A-218ENST00000640036 SLC25A21Q9BQT8 299 aaPredicted RBP4.41□□□□□ -1.7
SCN1A-218ENST00000640036 SYNPO2LQ9H987 977 aa4.41□□□□□ -1.7
SCN1A-218ENST00000640036 TXNL4BQ9NX01 149 aaKnown RBP4.41□□□□□ -1.7
SCN1A-218ENST00000640036 SLC22A13Q9Y226 551 aa4.41□□□□□ -1.7
SCN1A-218ENST00000640036 PSME4Q14997 1843 aa4.41□□□□□ -1.7
SCN1A-218ENST00000640036 RNF223E7ERA6 249 aa4.41□□□□□ -1.7
SCN1A-218ENST00000640036 THBDP07204 575 aa4.41□□□□□ -1.7
SCN1A-218ENST00000640036 HNRNPA3P51991 378 aaKnown RBP4.41□□□□□ -1.7
SCN1A-218ENST00000640036 FOXA1P55317 472 aa4.41□□□□□ -1.7
SCN1A-218ENST00000640036 TNXAQ16473 311 aa4.41□□□□□ -1.7
SCN1A-218ENST00000640036 SOWAHCQ53LP3 525 aaPredicted RBP4.41□□□□□ -1.7
SCN1A-218ENST00000640036 FFAR4Q5NUL3 377 aa4.41□□□□□ -1.7
SCN1A-218ENST00000640036 VWA1Q6PCB0 445 aa4.41□□□□□ -1.7
SCN1A-218ENST00000640036 ZNF679Q8IYX0 411 aa4.41□□□□□ -1.7
SCN1A-218ENST00000640036 OR4F17Q8NGA8 305 aa4.41□□□□□ -1.7
SCN1A-218ENST00000640036 OR4F4Q96R69 305 aa4.41□□□□□ -1.7
SCN1A-218ENST00000640036 SRRQ9GZT4 340 aa4.41□□□□□ -1.7
SCN1A-218ENST00000640036 EXOSC3Q9NQT5 275 aaKnown RBP4.41□□□□□ -1.7
SCN1A-218ENST00000640036 ZDHHC18Q9NUE0 388 aa4.41□□□□□ -1.7
SCN1A-218ENST00000640036 TIMM9Q9Y5J7 89 aa4.41□□□□□ -1.7
SCN1A-218ENST00000640036 A6NDN8 102 aa4.41□□□□□ -1.7
SCN1A-218ENST00000640036 ZNF716A6NP11 495 aa4.41□□□□□ -1.7
SCN1A-218ENST00000640036 ZNF724A8MTY0 619 aa4.41□□□□□ -1.7
SCN1A-218ENST00000640036 IGFBP1P08833 259 aaPredicted RBP4.41□□□□□ -1.7
SCN1A-218ENST00000640036 PMCHP20382 165 aa4.41□□□□□ -1.7
SCN1A-218ENST00000640036 GATA3P23771 443 aa4.41□□□□□ -1.7
SCN1A-218ENST00000640036 PTH2RP49190 550 aa4.41□□□□□ -1.7
SCN1A-218ENST00000640036 HLXQ14774 488 aaPredicted RBP4.41□□□□□ -1.7
SCN1A-218ENST00000640036 JOSD1Q15040 202 aaPredicted RBP4.41□□□□□ -1.7
SCN1A-218ENST00000640036 VAMP3Q15836 100 aa4.41□□□□□ -1.7
SCN1A-218ENST00000640036 SAXO2Q658L1 398 aa4.41□□□□□ -1.7
SCN1A-218ENST00000640036 TSPYL5Q86VY4 417 aaPredicted RBP4.41□□□□□ -1.7
SCN1A-218ENST00000640036 ZFAND2BQ8WV99 257 aa4.41□□□□□ -1.7
SCN1A-218ENST00000640036 RAX2Q96IS3 184 aa4.41□□□□□ -1.7
SCN1A-218ENST00000640036 P2RX4Q99571 388 aa4.41□□□□□ -1.7
SCN1A-218ENST00000640036 OR51I2Q9H344 312 aa4.41□□□□□ -1.7
SCN1A-218ENST00000640036 SMDT1Q9H4I9 107 aa4.41□□□□□ -1.7
SCN1A-218ENST00000640036 NPAP1Q9NZP6 1156 aa4.41□□□□□ -1.7
SCN1A-218ENST00000640036 KLF2Q9Y5W3 355 aaPredicted RBP4.41□□□□□ -1.7
SCN1A-218ENST00000640036 JMJD1CQ15652 2540 aa4.41□□□□□ -1.7
SCN1A-218ENST00000640036 OR2T8A6NH00 312 aa4.4□□□□□ -1.7
SCN1A-218ENST00000640036 ZNF727A8MUV8 499 aa4.4□□□□□ -1.7
SCN1A-218ENST00000640036 NTN3O00634 580 aaPredicted RBP4.4□□□□□ -1.7
SCN1A-218ENST00000640036 AKR7A2O43488 359 aa4.4□□□□□ -1.7
SCN1A-218ENST00000640036 GGCTO75223 188 aaKnown RBP4.4□□□□□ -1.7
SCN1A-218ENST00000640036 GYPAP02724 150 aa4.4□□□□□ -1.7
SCN1A-218ENST00000640036 CST2P09228 141 aa4.4□□□□□ -1.7
SCN1A-218ENST00000640036 INHBBP09529 407 aa4.4□□□□□ -1.7
SCN1A-218ENST00000640036 RPA2P15927 270 aa4.4□□□□□ -1.7
SCN1A-218ENST00000640036 OMGP23515 440 aa4.4□□□□□ -1.7
SCN1A-218ENST00000640036 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa4.4□□□□□ -1.7
SCN1A-218ENST00000640036 SLC24A4Q8NFF2 622 aa4.4□□□□□ -1.7
SCN1A-218ENST00000640036 OR5B3Q8NH48 314 aa4.4□□□□□ -1.7
SCN1A-218ENST00000640036 SGK494Q96LW2 274 aa4.4□□□□□ -1.7
SCN1A-218ENST00000640036 PRR14Q9BWN1 585 aa4.4□□□□□ -1.7
SCN1A-218ENST00000640036 DCAF13Q9NV06 445 aaKnown RBP4.4□□□□□ -1.7
SCN1A-218ENST00000640036 PIPOXQ9P0Z9 390 aa4.4□□□□□ -1.7
SCN1A-218ENST00000640036 SIP14410 1827 aa4.4□□□□□ -1.7
SCN1A-218ENST00000640036 M0R2Z0 102 aa4.4□□□□□ -1.7
SCN1A-218ENST00000640036 RRASP10301 218 aa4.4□□□□□ -1.7
SCN1A-218ENST00000640036 OR5I1Q13606 314 aa4.4□□□□□ -1.7
SCN1A-218ENST00000640036 RBMS2Q15434 407 aaKnown RBP4.4□□□□□ -1.7
SCN1A-218ENST00000640036 ACOT6Q3I5F7 207 aaPredicted RBP4.4□□□□□ -1.7
SCN1A-218ENST00000640036 GLIPR1L1Q6UWM5 242 aa4.4□□□□□ -1.7
SCN1A-218ENST00000640036 VN1R4Q7Z5H5 301 aa4.4□□□□□ -1.7
SCN1A-218ENST00000640036 HSD17B13Q7Z5P4 300 aaPredicted RBP4.4□□□□□ -1.7
SCN1A-218ENST00000640036 TMEM183AQ8IXX5 376 aa4.4□□□□□ -1.7
SCN1A-218ENST00000640036 TMEM163Q8TC26 289 aa4.4□□□□□ -1.7
SCN1A-218ENST00000640036 Q8WTZ3 238 aa4.4□□□□□ -1.7
SCN1A-218ENST00000640036 FBXL2Q9UKC9 423 aa4.4□□□□□ -1.7
SCN1A-218ENST00000640036 JTBO76095 146 aa4.4□□□□□ -1.7
SCN1A-218ENST00000640036 DXOO77932 396 aaKnown RBP4.4□□□□□ -1.7
SCN1A-218ENST00000640036 OR2F2O95006 317 aa4.4□□□□□ -1.7
SCN1A-218ENST00000640036 SLC2A10O95528 541 aa4.4□□□□□ -1.7
SCN1A-218ENST00000640036 NTF3P20783 257 aa4.4□□□□□ -1.7
SCN1A-218ENST00000640036 RFX2P48378 723 aa4.4□□□□□ -1.7
SCN1A-218ENST00000640036 EGR3Q06889 387 aa4.4□□□□□ -1.7
SCN1A-218ENST00000640036 MOGAT2Q3SYC2 334 aa4.4□□□□□ -1.7
SCN1A-218ENST00000640036 TSPO2Q5TGU0 170 aa4.4□□□□□ -1.7
SCN1A-218ENST00000640036 Q6ZN92 141 aa4.4□□□□□ -1.7
SCN1A-218ENST00000640036 OR51H1Q8NH63 302 aa4.4□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms