RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 C7orf50Q9BRJ6 194 aaKnown RBP16.89■□□□□ 0.29
CLN3-250ENST00000636839 PPA2Q9H2U2 334 aa16.89■□□□□ 0.29
CLN3-250ENST00000636839 DECR2Q9NUI1 292 aa16.89■□□□□ 0.29
CLN3-250ENST00000636839 NUDT15Q9NV35 164 aa16.89■□□□□ 0.29
CLN3-250ENST00000636839 A0A0B4J293 547 aa16.88■□□□□ 0.29
CLN3-250ENST00000636839 SH2D1BO14796 132 aa16.88■□□□□ 0.29
CLN3-250ENST00000636839 CA11O75493 328 aa16.88■□□□□ 0.29
CLN3-250ENST00000636839 CD8AP01732 235 aa16.88■□□□□ 0.29
CLN3-250ENST00000636839 SOD3P08294 240 aa16.88■□□□□ 0.29
CLN3-250ENST00000636839 SPIN3Q5JUX0 258 aa16.88■□□□□ 0.29
CLN3-250ENST00000636839 ZNF782Q6ZMW2 699 aaPredicted RBP16.88■□□□□ 0.29
CLN3-250ENST00000636839 VRK1Q99986 396 aaPredicted RBP16.88■□□□□ 0.29
CLN3-250ENST00000636839 DPAGT1Q9H3H5 408 aa16.88■□□□□ 0.29
CLN3-250ENST00000636839 SAP30LQ9HAJ7 183 aa16.88■□□□□ 0.29
CLN3-250ENST00000636839 DYSFO75923 2080 aa16.88■□□□□ 0.29
CLN3-250ENST00000636839 IGKV1D-17A0A075B6S4 117 aa16.87■□□□□ 0.29
CLN3-250ENST00000636839 TRAV39A0A0B4J263 110 aa16.87■□□□□ 0.29
CLN3-250ENST00000636839 PRSS44E7EML9 344 aa16.87■□□□□ 0.29
CLN3-250ENST00000636839 SDCBPO00560 298 aaPredicted RBP16.87■□□□□ 0.29
CLN3-250ENST00000636839 HPXP02790 462 aa16.87■□□□□ 0.29
CLN3-250ENST00000636839 AMY2AP04746 511 aa16.87■□□□□ 0.29
CLN3-250ENST00000636839 PSG2P11465 335 aa16.87■□□□□ 0.29
CLN3-250ENST00000636839 AMY2BP19961 511 aa16.87■□□□□ 0.29
CLN3-250ENST00000636839 SMIM21Q3B7S5 101 aa16.87■□□□□ 0.29
CLN3-250ENST00000636839 PAN3Q58A45 887 aaKnown RBP16.87■□□□□ 0.29
CLN3-250ENST00000636839 DEFB108BQ8NET1 73 aa16.87■□□□□ 0.29
CLN3-250ENST00000636839 PLPPR1Q8TBJ4 325 aa16.87■□□□□ 0.29
CLN3-250ENST00000636839 IFT22Q9H7X7 185 aa16.87■□□□□ 0.29
CLN3-250ENST00000636839 RNF7Q9UBF6 113 aa16.87■□□□□ 0.29
CLN3-250ENST00000636839 MRPS15P82914 257 aaKnown RBP16.87■□□□□ 0.29
CLN3-250ENST00000636839 ATXN7L3Q14CW9 347 aaPredicted RBP16.87■□□□□ 0.29
CLN3-250ENST00000636839 OR10Z1Q8NGY1 313 aa16.87■□□□□ 0.29
CLN3-250ENST00000636839 DIRC2Q96SL1 478 aa16.87■□□□□ 0.29
CLN3-250ENST00000636839 MS4A5Q9H3V2 200 aa16.87■□□□□ 0.29
CLN3-250ENST00000636839 C12orf4Q9NQ89 552 aa16.87■□□□□ 0.29
CLN3-250ENST00000636839 FAIMQ9NVQ4 179 aa16.87■□□□□ 0.29
CLN3-250ENST00000636839 ETAA1Q9NY74 926 aa16.87■□□□□ 0.29
CLN3-250ENST00000636839 OR2AT4A6NND4 320 aa16.86■□□□□ 0.29
CLN3-250ENST00000636839 CBX5P45973 191 aa16.86■□□□□ 0.29
CLN3-250ENST00000636839 COL10A1Q03692 680 aa16.86■□□□□ 0.29
CLN3-250ENST00000636839 RNASE10Q5GAN6 216 aaKnown RBP16.86■□□□□ 0.29
CLN3-250ENST00000636839 RSBN1Q5VWQ0 802 aaPredicted RBP16.86■□□□□ 0.29
CLN3-250ENST00000636839 CCL17Q92583 94 aa16.86■□□□□ 0.29
CLN3-250ENST00000636839 BEX2Q9BXY8 128 aa16.86■□□□□ 0.29
CLN3-250ENST00000636839 BEX1Q9HBH7 125 aa16.86■□□□□ 0.29
CLN3-250ENST00000636839 CHMP1AQ9HD42 196 aaPredicted RBP16.86■□□□□ 0.29
CLN3-250ENST00000636839 DNAJB11Q9UBS4 358 aa16.86■□□□□ 0.29
CLN3-250ENST00000636839 WIPI2Q9Y4P8 454 aa16.86■□□□□ 0.29
CLN3-250ENST00000636839 FAM208BQ5VWN6 2430 aa16.86■□□□□ 0.29
CLN3-250ENST00000636839 TMEM82A0PJX8 343 aa16.86■□□□□ 0.29
CLN3-250ENST00000636839 NAP1L6A6NFF2 107 aa16.86■□□□□ 0.29
CLN3-250ENST00000636839 LYNX1G3V0Z9 82 aa16.86■□□□□ 0.29
CLN3-250ENST00000636839 NAPSAO96009 420 aa16.86■□□□□ 0.29
CLN3-250ENST00000636839 KNG1P01042 644 aa16.86■□□□□ 0.29
CLN3-250ENST00000636839 LYNX1P0DP58 116 aa16.86■□□□□ 0.29
CLN3-250ENST00000636839 PRDX2P32119 198 aa16.86■□□□□ 0.29
CLN3-250ENST00000636839 SCGB2B2Q4G0G5 96 aa16.86■□□□□ 0.29
CLN3-250ENST00000636839 FAM209AQ5JX71 171 aa16.86■□□□□ 0.29
CLN3-250ENST00000636839 CADM3Q8N126 398 aa16.86■□□□□ 0.29
CLN3-250ENST00000636839 Q8TCH9 128 aa16.86■□□□□ 0.29
CLN3-250ENST00000636839 MARVELD1Q9BSK0 173 aa16.86■□□□□ 0.29
CLN3-250ENST00000636839 SPACA1Q9HBV2 294 aa16.86■□□□□ 0.29
CLN3-250ENST00000636839 ZNF107Q9UII5 783 aaPredicted RBP16.86■□□□□ 0.29
CLN3-250ENST00000636839 PLEKHA6Q9Y2H5 1048 aa16.86■□□□□ 0.29
CLN3-250ENST00000636839 A0A1B0GW55 424 aa16.85■□□□□ 0.29
CLN3-250ENST00000636839 DUX4L2P0CJ85 424 aa16.85■□□□□ 0.29
CLN3-250ENST00000636839 DUX4L3P0CJ86 424 aa16.85■□□□□ 0.29
CLN3-250ENST00000636839 DUX4L4P0CJ87 422 aa16.85■□□□□ 0.29
CLN3-250ENST00000636839 DUX4L5P0CJ88 424 aa16.85■□□□□ 0.29
CLN3-250ENST00000636839 DUX4L6P0CJ89 424 aa16.85■□□□□ 0.29
CLN3-250ENST00000636839 DUX4L7P0CJ90 424 aa16.85■□□□□ 0.29
CLN3-250ENST00000636839 TNFRSF1AP19438 455 aa16.85■□□□□ 0.29
CLN3-250ENST00000636839 SNRPD2P62316 118 aaKnown RBP16.85■□□□□ 0.29
CLN3-250ENST00000636839 TESK1Q15569 626 aa16.85■□□□□ 0.29
CLN3-250ENST00000636839 DUX4L9Q6RFH8 374 aaPredicted RBP16.85■□□□□ 0.29
CLN3-250ENST00000636839 FIP1L1Q6UN15 594 aaKnown RBP16.85■□□□□ 0.29
CLN3-250ENST00000636839 C17orf107Q6ZR85 190 aa16.85■□□□□ 0.29
CLN3-250ENST00000636839 CCDC107Q8WV48 283 aa16.85■□□□□ 0.29
CLN3-250ENST00000636839 MRGPRFQ96AM1 343 aa16.85■□□□□ 0.29
CLN3-250ENST00000636839 TMEM165Q9HC07 324 aa16.85■□□□□ 0.29
CLN3-250ENST00000636839 DUX4Q9UBX2 424 aa16.85■□□□□ 0.29
CLN3-250ENST00000636839 A6NNC1 897 aa16.84■□□□□ 0.29
CLN3-250ENST00000636839 LY6HO94772 140 aa16.84■□□□□ 0.29
CLN3-250ENST00000636839 DTYMKP23919 212 aa16.84■□□□□ 0.29
CLN3-250ENST00000636839 FAUP35544 74 aaKnown RBP16.84■□□□□ 0.29
CLN3-250ENST00000636839 GABRA2P47869 451 aa16.84■□□□□ 0.29
CLN3-250ENST00000636839 IDO2Q6ZQW0 420 aa16.84■□□□□ 0.29
CLN3-250ENST00000636839 FAM90A1Q86YD7 464 aa16.84■□□□□ 0.29
CLN3-250ENST00000636839 MRPL30Q8TCC3 161 aaKnown RBP16.84■□□□□ 0.29
CLN3-250ENST00000636839 EGLN1Q9GZT9 426 aa16.84■□□□□ 0.29
CLN3-250ENST00000636839 RASL12Q9NYN1 266 aa16.84■□□□□ 0.29
CLN3-250ENST00000636839 MEX3AA1L020 520 aaKnown RBP16.84■□□□□ 0.29
CLN3-250ENST00000636839 FUOMA2VDF0 154 aa16.84■□□□□ 0.29
CLN3-250ENST00000636839 INMT-MINDY4F8WBC2 141 aa16.84■□□□□ 0.29
CLN3-250ENST00000636839 SELLP14151 372 aa16.84■□□□□ 0.29
CLN3-250ENST00000636839 RCC1P18754 421 aaPredicted RBP16.84■□□□□ 0.29
CLN3-250ENST00000636839 LMO1P25800 156 aa16.84■□□□□ 0.29
CLN3-250ENST00000636839 C20orf85Q9H1P6 137 aa16.84■□□□□ 0.29
CLN3-250ENST00000636839 ANXA10Q9UJ72 324 aa16.84■□□□□ 0.29
CLN3-250ENST00000636839 LAMP3Q9UQV4 416 aa16.84■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms