RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 ZKSCAN7Q9P0L1 754 aaPredicted RBP12.86□□□□□ -0.35
CLN3-246ENST00000636228 ENOPH1Q9UHY7 261 aa12.86□□□□□ -0.35
CLN3-246ENST00000636228 HHLA2Q9UM44 414 aa12.86□□□□□ -0.35
CLN3-246ENST00000636228 DAPL1A0PJW8 107 aa12.85□□□□□ -0.35
CLN3-246ENST00000636228 ODAMA1E959 279 aa12.85□□□□□ -0.35
CLN3-246ENST00000636228 LY6LH3BQJ8 138 aa12.85□□□□□ -0.35
CLN3-246ENST00000636228 J3QLW9 94 aa12.85□□□□□ -0.35
CLN3-246ENST00000636228 KDM4BO94953 1096 aa12.85□□□□□ -0.35
CLN3-246ENST00000636228 ZNF19P17023 458 aa12.85□□□□□ -0.35
CLN3-246ENST00000636228 NFYBP25208 207 aa12.85□□□□□ -0.35
CLN3-246ENST00000636228 LMO1P25800 156 aa12.85□□□□□ -0.35
CLN3-246ENST00000636228 HOXD3P31249 432 aaPredicted RBP12.85□□□□□ -0.35
CLN3-246ENST00000636228 TMED1Q13445 227 aa12.85□□□□□ -0.35
CLN3-246ENST00000636228 C17orf58Q2M2W7 97 aa12.85□□□□□ -0.35
CLN3-246ENST00000636228 KRBOX4Q5JUW0 171 aa12.85□□□□□ -0.35
CLN3-246ENST00000636228 OR4X2Q8NGF9 303 aa12.85□□□□□ -0.35
CLN3-246ENST00000636228 OR4D6Q8NGJ1 314 aa12.85□□□□□ -0.35
CLN3-246ENST00000636228 OR13C3Q8NGS6 347 aa12.85□□□□□ -0.35
CLN3-246ENST00000636228 LEAP2Q969E1 77 aa12.85□□□□□ -0.35
CLN3-246ENST00000636228 RFKQ969G6 155 aa12.85□□□□□ -0.35
CLN3-246ENST00000636228 SPSB1Q96BD6 273 aa12.85□□□□□ -0.35
CLN3-246ENST00000636228 RNFT2Q96EX2 444 aa12.85□□□□□ -0.35
CLN3-246ENST00000636228 OSBPL10Q9BXB5 764 aa12.85□□□□□ -0.35
CLN3-246ENST00000636228 COMMD4Q9H0A8 199 aa12.85□□□□□ -0.35
CLN3-246ENST00000636228 PPIL3Q9H2H8 161 aaKnown RBP12.85□□□□□ -0.35
CLN3-246ENST00000636228 AASSQ9UDR5 926 aa12.85□□□□□ -0.35
CLN3-246ENST00000636228 FUOMA2VDF0 154 aa12.84□□□□□ -0.35
CLN3-246ENST00000636228 SLC33A1O00400 549 aaPredicted RBP12.84□□□□□ -0.35
CLN3-246ENST00000636228 HSPB6O14558 160 aa12.84□□□□□ -0.35
CLN3-246ENST00000636228 DEGS1O15121 323 aa12.84□□□□□ -0.35
CLN3-246ENST00000636228 SLC16A6O15403 523 aa12.84□□□□□ -0.35
CLN3-246ENST00000636228 ISG15P05161 165 aa12.84□□□□□ -0.35
CLN3-246ENST00000636228 HTR1AP08908 422 aa12.84□□□□□ -0.35
CLN3-246ENST00000636228 CD34P28906 385 aa12.84□□□□□ -0.35
CLN3-246ENST00000636228 PTGFRP43088 359 aa12.84□□□□□ -0.35
CLN3-246ENST00000636228 SLC35A2P78381 396 aa12.84□□□□□ -0.35
CLN3-246ENST00000636228 BNIP1Q12981 228 aa12.84□□□□□ -0.35
CLN3-246ENST00000636228 C1orf146Q5VVC0 180 aa12.84□□□□□ -0.35
CLN3-246ENST00000636228 C11orf87Q6NUJ2 197 aa12.84□□□□□ -0.35
CLN3-246ENST00000636228 ZNF329Q86UD4 541 aa12.84□□□□□ -0.35
CLN3-246ENST00000636228 HRASLS5Q96KN8 279 aa12.84□□□□□ -0.35
CLN3-246ENST00000636228 NR1H4Q96RI1 486 aaPredicted RBP12.84□□□□□ -0.35
CLN3-246ENST00000636228 J3QRE1 110 aa12.83□□□□□ -0.36
CLN3-246ENST00000636228 TMEM225BP0DP42 221 aa12.83□□□□□ -0.36
CLN3-246ENST00000636228 CEACAM3P40198 252 aa12.83□□□□□ -0.36
CLN3-246ENST00000636228 ARHGDIBP52566 201 aa12.83□□□□□ -0.36
CLN3-246ENST00000636228 PRRX1P54821 245 aa12.83□□□□□ -0.36
CLN3-246ENST00000636228 CDK5R1Q15078 307 aa12.83□□□□□ -0.36
CLN3-246ENST00000636228 LTC4SQ16873 150 aa12.83□□□□□ -0.36
CLN3-246ENST00000636228 VAX1Q5SQQ9 334 aa12.83□□□□□ -0.36
CLN3-246ENST00000636228 FDX2Q6P4F2 183 aa12.83□□□□□ -0.36
CLN3-246ENST00000636228 PELI1Q96FA3 418 aa12.83□□□□□ -0.36
CLN3-246ENST00000636228 CENPNQ96H22 339 aaPredicted RBP12.83□□□□□ -0.36
CLN3-246ENST00000636228 C4orf36Q96KX1 117 aa12.83□□□□□ -0.36
CLN3-246ENST00000636228 ZCCHC4Q9H5U6 513 aa12.83□□□□□ -0.36
CLN3-246ENST00000636228 IMPAD1Q9NX62 359 aa12.83□□□□□ -0.36
CLN3-246ENST00000636228 MYRFQ9Y2G1 1151 aa12.83□□□□□ -0.36
CLN3-246ENST00000636228 PCDHGB5Q9Y5G0 923 aa12.83□□□□□ -0.36
CLN3-246ENST00000636228 KMT2CQ8NEZ4 4911 aaKnown RBP12.82□□□□□ -0.36
CLN3-246ENST00000636228 OR4C45A6NMZ5 311 aa12.82□□□□□ -0.36
CLN3-246ENST00000636228 MT-ND2P03891 347 aa12.82□□□□□ -0.36
CLN3-246ENST00000636228 SNRNP70P08621 437 aaKnown RBP12.82□□□□□ -0.36
CLN3-246ENST00000636228 FCGR1AP12314 374 aa12.82□□□□□ -0.36
CLN3-246ENST00000636228 MNDAP41218 407 aa12.82□□□□□ -0.36
CLN3-246ENST00000636228 GABPB1Q06547 395 aaPredicted RBP12.82□□□□□ -0.36
CLN3-246ENST00000636228 DIAPH2-AS1Q14236 149 aa12.82□□□□□ -0.36
CLN3-246ENST00000636228 ZIK1Q3SY52 487 aaPredicted RBP12.82□□□□□ -0.36
CLN3-246ENST00000636228 C18orf65Q6ZTR6 163 aa12.82□□□□□ -0.36
CLN3-246ENST00000636228 KCTD20Q7Z5Y7 419 aa12.82□□□□□ -0.36
CLN3-246ENST00000636228 RCC1LQ96I51 464 aaKnown RBP12.82□□□□□ -0.36
CLN3-246ENST00000636228 KIRREL1Q96J84 757 aa12.82□□□□□ -0.36
CLN3-246ENST00000636228 ZNF649Q9BS31 505 aa12.82□□□□□ -0.36
CLN3-246ENST00000636228 LINC00527Q9UJ94 153 aa12.82□□□□□ -0.36
CLN3-246ENST00000636228 TRAV39A0A0B4J263 110 aa12.81□□□□□ -0.36
CLN3-246ENST00000636228 KBTBD11-OT1A0A1B0GTJ5 212 aa12.81□□□□□ -0.36
CLN3-246ENST00000636228 PSMB11A5LHX3 300 aa12.81□□□□□ -0.36
CLN3-246ENST00000636228 ZNF729A6NN14 1252 aaPredicted RBP12.81□□□□□ -0.36
CLN3-246ENST00000636228 H0YJX3 145 aa12.81□□□□□ -0.36
CLN3-246ENST00000636228 CSN2P05814 226 aa12.81□□□□□ -0.36
CLN3-246ENST00000636228 HCKP08631 526 aa12.81□□□□□ -0.36
CLN3-246ENST00000636228 CGB3P0DN86 165 aa12.81□□□□□ -0.36
CLN3-246ENST00000636228 CGB7P0DN87 165 aa12.81□□□□□ -0.36
CLN3-246ENST00000636228 GLP1RP43220 463 aa12.81□□□□□ -0.36
CLN3-246ENST00000636228 CCR9P51686 369 aa12.81□□□□□ -0.36
CLN3-246ENST00000636228 ZP1P60852 638 aa12.81□□□□□ -0.36
CLN3-246ENST00000636228 ALKBH1Q13686 389 aaKnown RBP12.81□□□□□ -0.36
CLN3-246ENST00000636228 HNF4GQ14541 408 aa12.81□□□□□ -0.36
CLN3-246ENST00000636228 LPCAT4Q643R3 524 aa12.81□□□□□ -0.36
CLN3-246ENST00000636228 LHFPL3Q86UP9 236 aa12.81□□□□□ -0.36
CLN3-246ENST00000636228 SAXO1Q8IYX7 474 aa12.81□□□□□ -0.36
CLN3-246ENST00000636228 OSR2Q8N2R0 312 aa12.81□□□□□ -0.36
CLN3-246ENST00000636228 LINC00482Q8N8I6 264 aa12.81□□□□□ -0.36
CLN3-246ENST00000636228 OR13A1Q8NGR1 328 aa12.81□□□□□ -0.36
CLN3-246ENST00000636228 OR56B4Q8NH76 319 aa12.81□□□□□ -0.36
CLN3-246ENST00000636228 OR9G1Q8NH87 305 aa12.81□□□□□ -0.36
CLN3-246ENST00000636228 RFESDQ8TAC1 157 aa12.81□□□□□ -0.36
CLN3-246ENST00000636228 TOMM40LQ969M1 308 aa12.81□□□□□ -0.36
CLN3-246ENST00000636228 NOL4LQ96MY1 436 aaPredicted RBP12.81□□□□□ -0.36
CLN3-246ENST00000636228 ISG20L2Q9H9L3 353 aaKnown RBP12.81□□□□□ -0.36
CLN3-246ENST00000636228 KIF25Q9UIL4 384 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms