RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 Q8NFD4 153 aa14.91□□□□□ -0.02
CLN3-239ENST00000628023 OR4S1Q8NGB4 309 aa14.91□□□□□ -0.02
CLN3-239ENST00000628023 C8orf46Q8TAG6 207 aa14.91□□□□□ -0.02
CLN3-239ENST00000628023 FAM46BQ96A09 425 aa14.91□□□□□ -0.02
CLN3-239ENST00000628023 WDFY2Q96P53 400 aa14.91□□□□□ -0.02
CLN3-239ENST00000628023 CHCHD6Q9BRQ6 235 aa14.91□□□□□ -0.02
CLN3-239ENST00000628023 OR51E2Q9H255 320 aa14.91□□□□□ -0.02
CLN3-239ENST00000628023 BANF2Q9H503 90 aa14.91□□□□□ -0.02
CLN3-239ENST00000628023 TXNL4BQ9NX01 149 aaKnown RBP14.91□□□□□ -0.02
CLN3-239ENST00000628023 TRAV40A0A0B4J280 105 aa14.9□□□□□ -0.02
CLN3-239ENST00000628023 SLC33A1O00400 549 aaPredicted RBP14.9□□□□□ -0.02
CLN3-239ENST00000628023 MGST3O14880 152 aa14.9□□□□□ -0.02
CLN3-239ENST00000628023 GADD45AP24522 165 aa14.9□□□□□ -0.02
CLN3-239ENST00000628023 P2RY14Q15391 338 aa14.9□□□□□ -0.02
CLN3-239ENST00000628023 TIMM50Q3ZCQ8 353 aa14.9□□□□□ -0.02
CLN3-239ENST00000628023 NHLRC3Q5JS37 347 aa14.9□□□□□ -0.02
CLN3-239ENST00000628023 C1orf100Q5SVJ3 147 aa14.9□□□□□ -0.02
CLN3-239ENST00000628023 MRPS24Q96EL2 167 aaKnown RBP14.9□□□□□ -0.02
CLN3-239ENST00000628023 SELENOIQ9C0D9 397 aa14.9□□□□□ -0.02
CLN3-239ENST00000628023 KPTNQ9Y664 436 aa14.9□□□□□ -0.02
CLN3-239ENST00000628023 V9GY05 133 aa14.9□□□□□ -0.02
CLN3-239ENST00000628023 A0A0G2JK05 382 aa14.89□□□□□ -0.03
CLN3-239ENST00000628023 FUOMA2VDF0 154 aa14.89□□□□□ -0.03
CLN3-239ENST00000628023 SLC17A2O00624 439 aa14.89□□□□□ -0.03
CLN3-239ENST00000628023 GEMIN2O14893 280 aaKnown RBP14.89□□□□□ -0.03
CLN3-239ENST00000628023 SLC22A1O15245 554 aa14.89□□□□□ -0.03
CLN3-239ENST00000628023 MPIG6BO95866 241 aa14.89□□□□□ -0.03
CLN3-239ENST00000628023 SMIM18P0DKX4 95 aa14.89□□□□□ -0.03
CLN3-239ENST00000628023 MGMTP16455 207 aa14.89□□□□□ -0.03
CLN3-239ENST00000628023 RAB3BP20337 219 aa14.89□□□□□ -0.03
CLN3-239ENST00000628023 LMO1P25800 156 aa14.89□□□□□ -0.03
CLN3-239ENST00000628023 FGF9P31371 208 aaPredicted RBP14.89□□□□□ -0.03
CLN3-239ENST00000628023 RANBP1P43487 201 aa14.89□□□□□ -0.03
CLN3-239ENST00000628023 ATXN7L3Q14CW9 347 aaPredicted RBP14.89□□□□□ -0.03
CLN3-239ENST00000628023 TAF9Q16594 264 aa14.89□□□□□ -0.03
CLN3-239ENST00000628023 MPV17LQ2QL34 196 aa14.89□□□□□ -0.03
CLN3-239ENST00000628023 ATAD3CQ5T2N8 411 aa14.89□□□□□ -0.03
CLN3-239ENST00000628023 KIR3DL3Q8N743 410 aa14.89□□□□□ -0.03
CLN3-239ENST00000628023 TPRX1Q8N7U7 411 aa14.89□□□□□ -0.03
CLN3-239ENST00000628023 NEK7Q8TDX7 302 aa14.89□□□□□ -0.03
CLN3-239ENST00000628023 UPRTQ96BW1 309 aa14.89□□□□□ -0.03
CLN3-239ENST00000628023 DMRTB1Q96MA1 342 aa14.89□□□□□ -0.03
CLN3-239ENST00000628023 KCTD7Q96MP8 289 aa14.89□□□□□ -0.03
CLN3-239ENST00000628023 GFI1Q99684 422 aa14.89□□□□□ -0.03
CLN3-239ENST00000628023 ING3Q9NXR8 418 aa14.89□□□□□ -0.03
CLN3-239ENST00000628023 IGHV3OR16-10A0A075B7F0 116 aa14.88□□□□□ -0.03
CLN3-239ENST00000628023 hADV38S2A0JD32 116 aa14.88□□□□□ -0.03
CLN3-239ENST00000628023 TRIM64CA6NLI5 447 aa14.88□□□□□ -0.03
CLN3-239ENST00000628023 M0R1W7 72 aa14.88□□□□□ -0.03
CLN3-239ENST00000628023 BPNT1O95861 308 aa14.88□□□□□ -0.03
CLN3-239ENST00000628023 ARSBP15848 533 aa14.88□□□□□ -0.03
CLN3-239ENST00000628023 JUNBP17275 347 aaPredicted RBP14.88□□□□□ -0.03
CLN3-239ENST00000628023 OR10A3P58181 314 aa14.88□□□□□ -0.03
CLN3-239ENST00000628023 TRAPPC6BQ86SZ2 158 aa14.88□□□□□ -0.03
CLN3-239ENST00000628023 TMEM104Q8NE00 496 aa14.88□□□□□ -0.03
CLN3-239ENST00000628023 ZNF418Q8TF45 676 aaPredicted RBP14.88□□□□□ -0.03
CLN3-239ENST00000628023 C1orf147Q96MC9 270 aaPredicted RBP14.88□□□□□ -0.03
CLN3-239ENST00000628023 MRPS26Q9BYN8 205 aaKnown RBP14.88□□□□□ -0.03
CLN3-239ENST00000628023 SIRPDQ9H106 197 aa14.88□□□□□ -0.03
CLN3-239ENST00000628023 SHISA3A0PJX4 238 aa14.87□□□□□ -0.03
CLN3-239ENST00000628023 MEX3AA1L020 520 aaKnown RBP14.87□□□□□ -0.03
CLN3-239ENST00000628023 SMIM30A4D0T7 59 aa14.87□□□□□ -0.03
CLN3-239ENST00000628023 MMP9P14780 707 aa14.87□□□□□ -0.03
CLN3-239ENST00000628023 EPHA1P21709 976 aa14.87□□□□□ -0.03
CLN3-239ENST00000628023 P2RX3P56373 397 aa14.87□□□□□ -0.03
CLN3-239ENST00000628023 ZNF273Q14593 569 aa14.87□□□□□ -0.03
CLN3-239ENST00000628023 KRBOX4Q5JUW0 171 aa14.87□□□□□ -0.03
CLN3-239ENST00000628023 HES5Q5TA89 166 aa14.87□□□□□ -0.03
CLN3-239ENST00000628023 GPR157Q5UAW9 335 aa14.87□□□□□ -0.03
CLN3-239ENST00000628023 TMEM200BQ69YZ2 307 aa14.87□□□□□ -0.03
CLN3-239ENST00000628023 OR10K2Q6IF99 312 aa14.87□□□□□ -0.03
CLN3-239ENST00000628023 C12orf54Q6X4T0 127 aa14.87□□□□□ -0.03
CLN3-239ENST00000628023 VMO1Q7Z5L0 202 aa14.87□□□□□ -0.03
CLN3-239ENST00000628023 KCNG3Q8TAE7 436 aa14.87□□□□□ -0.03
CLN3-239ENST00000628023 ZFAND2BQ8WV99 257 aa14.87□□□□□ -0.03
CLN3-239ENST00000628023 TBX15Q96SF7 602 aa14.87□□□□□ -0.03
CLN3-239ENST00000628023 DPCDQ9BVM2 203 aaPredicted RBP14.87□□□□□ -0.03
CLN3-239ENST00000628023 TMEM59Q9BXS4 323 aa14.87□□□□□ -0.03
CLN3-239ENST00000628023 KCNK15Q9H427 330 aa14.87□□□□□ -0.03
CLN3-239ENST00000628023 SIRT7Q9NRC8 400 aa14.87□□□□□ -0.03
CLN3-239ENST00000628023 NUP50Q9UKX7 468 aa14.87□□□□□ -0.03
CLN3-239ENST00000628023 TRAV24A0A0B4J272 114 aa14.86□□□□□ -0.03
CLN3-239ENST00000628023 hCG_1809904A0A1W2PP81 198 aa14.86□□□□□ -0.03
CLN3-239ENST00000628023 A0A1W2PPE2 198 aa14.86□□□□□ -0.03
CLN3-239ENST00000628023 A0A1W2PR64 198 aa14.86□□□□□ -0.03
CLN3-239ENST00000628023 A0A1W2PRV1 198 aa14.86□□□□□ -0.03
CLN3-239ENST00000628023 AIREO43918 545 aa14.86□□□□□ -0.03
CLN3-239ENST00000628023 IGHV4-38-2P0DP08 117 aa14.86□□□□□ -0.03
CLN3-239ENST00000628023 VSIG8P0DPA2 414 aa14.86□□□□□ -0.03
CLN3-239ENST00000628023 CCL3L1P16619 93 aa14.86□□□□□ -0.03
CLN3-239ENST00000628023 ERP29P30040 261 aaKnown RBP14.86□□□□□ -0.03
CLN3-239ENST00000628023 CLDN12P56749 244 aa14.86□□□□□ -0.03
CLN3-239ENST00000628023 MEF2CQ06413 473 aaPredicted RBP14.86□□□□□ -0.03
CLN3-239ENST00000628023 AESQ08117 197 aa14.86□□□□□ -0.03
CLN3-239ENST00000628023 METAP1DQ6UB28 335 aaPredicted RBP14.86□□□□□ -0.03
CLN3-239ENST00000628023 BPIFB2Q8N4F0 458 aa14.86□□□□□ -0.03
CLN3-239ENST00000628023 SUMF2Q8NBJ7 301 aa14.86□□□□□ -0.03
CLN3-239ENST00000628023 LHX4Q969G2 390 aa14.86□□□□□ -0.03
CLN3-239ENST00000628023 YIPF6Q96EC8 236 aa14.86□□□□□ -0.03
CLN3-239ENST00000628023 Q96M66 194 aa14.86□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms