RNA–Protein interactions for RNA: ENST00000608957.5

LINC00539-204, long intergenic non-protein coding RNA 539, humanhuman

TSL 5 BASIC

Gene LINC00539, Length 869 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-204ENST00000608957 MGMTP16455 207 aa9.58□□□□□ -0.88
LINC00539-204ENST00000608957 EGR1P18146 543 aa9.58□□□□□ -0.88
LINC00539-204ENST00000608957 HAAOP46952 286 aa9.58□□□□□ -0.88
LINC00539-204ENST00000608957 IFITM3Q01628 133 aa9.58□□□□□ -0.88
LINC00539-204ENST00000608957 PAX8Q06710 450 aa9.58□□□□□ -0.88
LINC00539-204ENST00000608957 GPR176Q14439 515 aa9.58□□□□□ -0.88
LINC00539-204ENST00000608957 RSU1Q15404 277 aa9.58□□□□□ -0.88
LINC00539-204ENST00000608957 ESCO2Q56NI9 601 aa9.58□□□□□ -0.88
LINC00539-204ENST00000608957 TRIQKQ629K1 86 aa9.58□□□□□ -0.88
LINC00539-204ENST00000608957 SFRP4Q6FHJ7 346 aaPredicted RBP9.58□□□□□ -0.88
LINC00539-204ENST00000608957 RAB12Q6IQ22 244 aa9.58□□□□□ -0.88
LINC00539-204ENST00000608957 SLC25A26Q70HW3 274 aa9.58□□□□□ -0.88
LINC00539-204ENST00000608957 ZNF573Q86YE8 665 aa9.58□□□□□ -0.88
LINC00539-204ENST00000608957 SAXO1Q8IYX7 474 aa9.58□□□□□ -0.88
LINC00539-204ENST00000608957 C1orf87Q8N0U7 546 aa9.58□□□□□ -0.88
LINC00539-204ENST00000608957 Q8N402 240 aa9.58□□□□□ -0.88
LINC00539-204ENST00000608957 GCSAMQ8N6F7 178 aa9.58□□□□□ -0.88
LINC00539-204ENST00000608957 TMEM104Q8NE00 496 aa9.58□□□□□ -0.88
LINC00539-204ENST00000608957 NANPQ8TBE9 248 aa9.58□□□□□ -0.88
LINC00539-204ENST00000608957 C22orf15Q8WYQ4 148 aa9.58□□□□□ -0.88
LINC00539-204ENST00000608957 NEIL1Q96FI4 390 aaPredicted RBP9.58□□□□□ -0.88
LINC00539-204ENST00000608957 NUDT16L1Q9BRJ7 211 aaKnown RBP9.58□□□□□ -0.88
LINC00539-204ENST00000608957 URM1Q9BTM9 101 aaKnown RBP9.58□□□□□ -0.88
LINC00539-204ENST00000608957 SSBP3Q9BWW4 388 aaPredicted RBP9.58□□□□□ -0.88
LINC00539-204ENST00000608957 PKIBQ9C010 78 aa9.58□□□□□ -0.88
LINC00539-204ENST00000608957 LPAR5Q9H1C0 372 aa9.58□□□□□ -0.88
LINC00539-204ENST00000608957 BANF2Q9H503 90 aa9.58□□□□□ -0.88
LINC00539-204ENST00000608957 FN3KRPQ9HA64 309 aa9.58□□□□□ -0.88
LINC00539-204ENST00000608957 C14orf119Q9NWQ9 140 aa9.58□□□□□ -0.88
LINC00539-204ENST00000608957 RNF7Q9UBF6 113 aa9.58□□□□□ -0.88
LINC00539-204ENST00000608957 MIOXQ9UGB7 285 aa9.58□□□□□ -0.88
LINC00539-204ENST00000608957 MRPS7Q9Y2R9 242 aaKnown RBP9.58□□□□□ -0.88
LINC00539-204ENST00000608957 A0A0A6YYD4 124 aa9.57□□□□□ -0.88
LINC00539-204ENST00000608957 A0A0A6YYJ9 748 aa9.57□□□□□ -0.88
LINC00539-204ENST00000608957 IGHV2-70DA0A0C4DH43 119 aa9.57□□□□□ -0.88
LINC00539-204ENST00000608957 LRRC30A6NM36 301 aa9.57□□□□□ -0.88
LINC00539-204ENST00000608957 C22orf46C9J442 243 aa9.57□□□□□ -0.88
LINC00539-204ENST00000608957 HTR3BO95264 441 aa9.57□□□□□ -0.88
LINC00539-204ENST00000608957 LHBP01229 141 aa9.57□□□□□ -0.88
LINC00539-204ENST00000608957 HLA-DQB1P01920 261 aa9.57□□□□□ -0.88
LINC00539-204ENST00000608957 CSTBP04080 98 aaKnown RBP9.57□□□□□ -0.88
LINC00539-204ENST00000608957 GRPP07492 148 aa9.57□□□□□ -0.88
LINC00539-204ENST00000608957 CHRM2P08172 466 aa9.57□□□□□ -0.88
LINC00539-204ENST00000608957 IL7P13232 177 aa9.57□□□□□ -0.88
LINC00539-204ENST00000608957 CPT2P23786 658 aa9.57□□□□□ -0.88
LINC00539-204ENST00000608957 MPZP25189 248 aa9.57□□□□□ -0.88
LINC00539-204ENST00000608957 HILS1P60008 231 aa9.57□□□□□ -0.88
LINC00539-204ENST00000608957 GNB2P62879 340 aa9.57□□□□□ -0.88
LINC00539-204ENST00000608957 RPS27AP62979 156 aaKnown RBP9.57□□□□□ -0.88
LINC00539-204ENST00000608957 MRPS10P82664 201 aaKnown RBP9.57□□□□□ -0.88
LINC00539-204ENST00000608957 MZT1Q08AG7 82 aa9.57□□□□□ -0.88
LINC00539-204ENST00000608957 IL24Q13007 206 aa9.57□□□□□ -0.88
LINC00539-204ENST00000608957 BAK1Q16611 211 aa9.57□□□□□ -0.88
LINC00539-204ENST00000608957 MOGAT2Q3SYC2 334 aa9.57□□□□□ -0.88
LINC00539-204ENST00000608957 STEAP3Q658P3 488 aa9.57□□□□□ -0.88
LINC00539-204ENST00000608957 HAGHLQ6PII5 290 aaPredicted RBP9.57□□□□□ -0.88
LINC00539-204ENST00000608957 LYSMD2Q8IV50 215 aa9.57□□□□□ -0.88
LINC00539-204ENST00000608957 MKXQ8IYA7 352 aa9.57□□□□□ -0.88
LINC00539-204ENST00000608957 BCL6BQ8N143 479 aaPredicted RBP9.57□□□□□ -0.88
LINC00539-204ENST00000608957 BOLLQ8N9W6 283 aaKnown RBP9.57□□□□□ -0.88
LINC00539-204ENST00000608957 SPERTQ8NA61 448 aa9.57□□□□□ -0.88
LINC00539-204ENST00000608957 OR11L1Q8NGX0 322 aa9.57□□□□□ -0.88
LINC00539-204ENST00000608957 NICN1Q9BSH3 213 aa9.57□□□□□ -0.88
LINC00539-204ENST00000608957 TM2D1Q9BX74 207 aa9.57□□□□□ -0.88
LINC00539-204ENST00000608957 SELENOIQ9C0D9 397 aa9.57□□□□□ -0.88
LINC00539-204ENST00000608957 OR51I2Q9H344 312 aa9.57□□□□□ -0.88
LINC00539-204ENST00000608957 PCDHB16Q9NRJ7 776 aa9.57□□□□□ -0.88
LINC00539-204ENST00000608957 C1orf123Q9NWV4 160 aa9.57□□□□□ -0.88
LINC00539-204ENST00000608957 SOX21Q9Y651 276 aaPredicted RBP9.57□□□□□ -0.88
LINC00539-204ENST00000608957 TRAV18A0A075B6X5 111 aa9.56□□□□□ -0.88
LINC00539-204ENST00000608957 IGHV3OR15-7A0A075B7D8 119 aa9.56□□□□□ -0.88
LINC00539-204ENST00000608957 A0A1B0GW55 424 aa9.56□□□□□ -0.88
LINC00539-204ENST00000608957 A0A1W2PQ09 198 aa9.56□□□□□ -0.88
LINC00539-204ENST00000608957 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP9.56□□□□□ -0.88
LINC00539-204ENST00000608957 RAB27BO00194 218 aa9.56□□□□□ -0.88
LINC00539-204ENST00000608957 LGALS8O00214 317 aa9.56□□□□□ -0.88
LINC00539-204ENST00000608957 GSTZ1O43708 216 aaPredicted RBP9.56□□□□□ -0.88
LINC00539-204ENST00000608957 SYNGR1O43759 233 aa9.56□□□□□ -0.88
LINC00539-204ENST00000608957 DUX4L2P0CJ85 424 aa9.56□□□□□ -0.88
LINC00539-204ENST00000608957 DUX4L3P0CJ86 424 aa9.56□□□□□ -0.88
LINC00539-204ENST00000608957 DUX4L4P0CJ87 422 aa9.56□□□□□ -0.88
LINC00539-204ENST00000608957 DUX4L5P0CJ88 424 aa9.56□□□□□ -0.88
LINC00539-204ENST00000608957 DUX4L6P0CJ89 424 aa9.56□□□□□ -0.88
LINC00539-204ENST00000608957 DUX4L7P0CJ90 424 aa9.56□□□□□ -0.88
LINC00539-204ENST00000608957 GTF2F2P13984 249 aa9.56□□□□□ -0.88
LINC00539-204ENST00000608957 IRF2P14316 349 aa9.56□□□□□ -0.88
LINC00539-204ENST00000608957 VEGFCP49767 419 aa9.56□□□□□ -0.88
LINC00539-204ENST00000608957 RNASE12Q5GAN4 147 aaKnown RBP9.56□□□□□ -0.88
LINC00539-204ENST00000608957 FAM76BQ5HYJ3 339 aa9.56□□□□□ -0.88
LINC00539-204ENST00000608957 WDR25Q64LD2 544 aaPredicted RBP9.56□□□□□ -0.88
LINC00539-204ENST00000608957 DUX4L9Q6RFH8 374 aaPredicted RBP9.56□□□□□ -0.88
LINC00539-204ENST00000608957 DCDC5Q6ZRR9 648 aa9.56□□□□□ -0.88
LINC00539-204ENST00000608957 FAM90A1Q86YD7 464 aa9.56□□□□□ -0.88
LINC00539-204ENST00000608957 FGFRL1Q8N441 504 aa9.56□□□□□ -0.88
LINC00539-204ENST00000608957 ZDHHC22Q8N966 263 aa9.56□□□□□ -0.88
LINC00539-204ENST00000608957 OR8B3Q8NGG8 313 aa9.56□□□□□ -0.88
LINC00539-204ENST00000608957 OR56B1Q8NGI3 324 aa9.56□□□□□ -0.88
LINC00539-204ENST00000608957 OR51T1Q8NGJ9 327 aa9.56□□□□□ -0.88
LINC00539-204ENST00000608957 SMIM4Q8WVI0 70 aa9.56□□□□□ -0.88
LINC00539-204ENST00000608957 TRIM63Q969Q1 353 aa9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 61 ms