RNA–Protein interactions for RNA: ENST00000604743.5

TUBE1-208, Transcript of tubulin epsilon 1, human

TSL 3

Gene TUBE1, Length 959 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TUBE1-208	ENST00000604743	MAGEA13P	A6NCF6	341 aa		11.74	□□□□□ -0.53
TUBE1-208	ENST00000604743	BTBD17	A6NE02	478 aa		11.74	□□□□□ -0.53
TUBE1-208	ENST00000604743	MAS1	P04201	325 aa		11.74	□□□□□ -0.53
TUBE1-208	ENST00000604743	IGFBP3	P17936	291 aa	Predicted RBP	11.74	□□□□□ -0.53
TUBE1-208	ENST00000604743	GLIPR1	P48060	266 aa		11.74	□□□□□ -0.53
TUBE1-208	ENST00000604743	P2RX3	P56373	397 aa		11.74	□□□□□ -0.53
TUBE1-208	ENST00000604743	ATXN7L3	Q14CW9	347 aa	Predicted RBP	11.74	□□□□□ -0.53
TUBE1-208	ENST00000604743	MED22	Q15528	200 aa		11.74	□□□□□ -0.53
TUBE1-208	ENST00000604743	MIDN	Q504T8	468 aa		11.74	□□□□□ -0.53
TUBE1-208	ENST00000604743	OR13D1	Q8NGV5	346 aa		11.74	□□□□□ -0.53
TUBE1-208	ENST00000604743	CNBD2	Q96M20	576 aa		11.74	□□□□□ -0.53
TUBE1-208	ENST00000604743	OR5M11	Q96RB7	305 aa		11.74	□□□□□ -0.53
TUBE1-208	ENST00000604743	ANKRD60	Q9BZ19	345 aa		11.74	□□□□□ -0.53
TUBE1-208	ENST00000604743	CCDC90B	Q9GZT6	254 aa		11.74	□□□□□ -0.53
TUBE1-208	ENST00000604743	METTL9	Q9H1A3	318 aa		11.74	□□□□□ -0.53
TUBE1-208	ENST00000604743	LINC00312	Q9Y6C7	94 aa		11.74	□□□□□ -0.53
TUBE1-208	ENST00000604743	TRBV5-7	A0A0A0MS05	114 aa		11.73	□□□□□ -0.53
TUBE1-208	ENST00000604743	FUOM	A2VDF0	154 aa		11.73	□□□□□ -0.53
TUBE1-208	ENST00000604743	SLC33A1	O00400	549 aa	Predicted RBP	11.73	□□□□□ -0.53
TUBE1-208	ENST00000604743	GPR137B	O60478	399 aa		11.73	□□□□□ -0.53
TUBE1-208	ENST00000604743	ATP6V1G2	O95670	118 aa		11.73	□□□□□ -0.53
TUBE1-208	ENST00000604743	CSTB	P04080	98 aa	Known RBP	11.73	□□□□□ -0.53
TUBE1-208	ENST00000604743	ARG1	P05089	322 aa		11.73	□□□□□ -0.53
TUBE1-208	ENST00000604743	IGHV1-8	P0DP01	117 aa		11.73	□□□□□ -0.53
TUBE1-208	ENST00000604743	SERPINA2	P20848	420 aa		11.73	□□□□□ -0.53
TUBE1-208	ENST00000604743	MDK	P21741	143 aa	Predicted RBP	11.73	□□□□□ -0.53
TUBE1-208	ENST00000604743	LMO1	P25800	156 aa		11.73	□□□□□ -0.53
TUBE1-208	ENST00000604743	ERP29	P30040	261 aa	Known RBP	11.73	□□□□□ -0.53
TUBE1-208	ENST00000604743	DYNC1I2	Q13409	638 aa	Known RBP	11.73	□□□□□ -0.53
TUBE1-208	ENST00000604743	TAF9	Q16594	264 aa		11.73	□□□□□ -0.53
TUBE1-208	ENST00000604743	PIGY	Q3MUY2	71 aa		11.73	□□□□□ -0.53
TUBE1-208	ENST00000604743	PAN3	Q58A45	887 aa	Known RBP	11.73	□□□□□ -0.53
TUBE1-208	ENST00000604743	KRBOX4	Q5JUW0	171 aa		11.73	□□□□□ -0.53
TUBE1-208	ENST00000604743	ELP2	Q6IA86	826 aa		11.73	□□□□□ -0.53
TUBE1-208	ENST00000604743	LHFPL4	Q7Z7J7	247 aa		11.73	□□□□□ -0.53
TUBE1-208	ENST00000604743	JAGN1	Q8N5M9	183 aa		11.73	□□□□□ -0.53
TUBE1-208	ENST00000604743	CHST4	Q8NCG5	386 aa		11.73	□□□□□ -0.53
TUBE1-208	ENST00000604743	CDCA4	Q9BXL8	241 aa		11.73	□□□□□ -0.53
TUBE1-208	ENST00000604743	TRGV10	A0A0A0MS01	117 aa		11.72	□□□□□ -0.53
TUBE1-208	ENST00000604743		H3BUX3	64 aa		11.72	□□□□□ -0.53
TUBE1-208	ENST00000604743	RGS10	O43665	173 aa		11.72	□□□□□ -0.53
TUBE1-208	ENST00000604743	HSPA13	P48723	471 aa		11.72	□□□□□ -0.53
TUBE1-208	ENST00000604743	SLC35A2	P78381	396 aa		11.72	□□□□□ -0.53
TUBE1-208	ENST00000604743	BDH1	Q02338	343 aa		11.72	□□□□□ -0.53
TUBE1-208	ENST00000604743	INSL4	Q14641	139 aa		11.72	□□□□□ -0.53
TUBE1-208	ENST00000604743	SPHAR	Q15513	63 aa		11.72	□□□□□ -0.53
TUBE1-208	ENST00000604743	LY6E	Q16553	131 aa		11.72	□□□□□ -0.53
TUBE1-208	ENST00000604743	PLA1A	Q53H76	456 aa		11.72	□□□□□ -0.53
TUBE1-208	ENST00000604743	RNLS	Q5VYX0	342 aa		11.72	□□□□□ -0.53
TUBE1-208	ENST00000604743	BEND2	Q8NDZ0	799 aa		11.72	□□□□□ -0.53
TUBE1-208	ENST00000604743	DYRK2	Q92630	601 aa		11.72	□□□□□ -0.53
TUBE1-208	ENST00000604743	MUL1	Q969V5	352 aa		11.72	□□□□□ -0.53
TUBE1-208	ENST00000604743	COQ2	Q96H96	371 aa		11.72	□□□□□ -0.53
TUBE1-208	ENST00000604743	DERL3	Q96Q80	235 aa		11.72	□□□□□ -0.53
TUBE1-208	ENST00000604743	SSX3	Q99909	188 aa		11.72	□□□□□ -0.53
TUBE1-208	ENST00000604743	TMED9	Q9BVK6	235 aa		11.72	□□□□□ -0.53
TUBE1-208	ENST00000604743	C1RL	Q9NZP8	487 aa		11.72	□□□□□ -0.53
TUBE1-208	ENST00000604743	FOXJ3	Q9UPW0	622 aa		11.72	□□□□□ -0.53
TUBE1-208	ENST00000604743	ST3GAL6	Q9Y274	331 aa		11.72	□□□□□ -0.53
TUBE1-208	ENST00000604743	UBE2J1	Q9Y385	318 aa	Predicted RBP	11.72	□□□□□ -0.53
TUBE1-208	ENST00000604743	ODAM	A1E959	279 aa		11.71	□□□□□ -0.53
TUBE1-208	ENST00000604743	FAM172BP	A6NC97	362 aa		11.71	□□□□□ -0.53
TUBE1-208	ENST00000604743	PIN1P1	O15428	100 aa		11.71	□□□□□ -0.53
TUBE1-208	ENST00000604743	GPX5	O75715	221 aa		11.71	□□□□□ -0.53
TUBE1-208	ENST00000604743	MMP23A	O75900	390 aa		11.71	□□□□□ -0.53
TUBE1-208	ENST00000604743	RBP4	P02753	201 aa		11.71	□□□□□ -0.53
TUBE1-208	ENST00000604743	CD1A	P06126	327 aa		11.71	□□□□□ -0.53
TUBE1-208	ENST00000604743	HSMCR30	P0CW71	290 aa		11.71	□□□□□ -0.53
TUBE1-208	ENST00000604743	FST	P19883	344 aa		11.71	□□□□□ -0.53
TUBE1-208	ENST00000604743	RAG2	P55895	527 aa		11.71	□□□□□ -0.53
TUBE1-208	ENST00000604743	RELB	Q01201	579 aa		11.71	□□□□□ -0.53
TUBE1-208	ENST00000604743	IL13RA2	Q14627	380 aa		11.71	□□□□□ -0.53
TUBE1-208	ENST00000604743	SLC22A6	Q4U2R8	563 aa		11.71	□□□□□ -0.53
TUBE1-208	ENST00000604743	PRAMEF5	Q5TYX0	476 aa		11.71	□□□□□ -0.53
TUBE1-208	ENST00000604743	ASCL4	Q6XD76	172 aa		11.71	□□□□□ -0.53
TUBE1-208	ENST00000604743	OSR2	Q8N2R0	312 aa		11.71	□□□□□ -0.53
TUBE1-208	ENST00000604743	OR51T1	Q8NGJ9	327 aa		11.71	□□□□□ -0.53
TUBE1-208	ENST00000604743	AJUBA	Q96IF1	538 aa		11.71	□□□□□ -0.53
TUBE1-208	ENST00000604743	PPIL3	Q9H2H8	161 aa	Known RBP	11.71	□□□□□ -0.53
TUBE1-208	ENST00000604743	GAL3ST2	Q9H3Q3	398 aa		11.71	□□□□□ -0.53
TUBE1-208	ENST00000604743	ZNF581	Q9P0T4	197 aa		11.71	□□□□□ -0.53
TUBE1-208	ENST00000604743	VPREB3	Q9UKI3	123 aa		11.71	□□□□□ -0.53
TUBE1-208	ENST00000604743	MRPS28	Q9Y2Q9	187 aa	Known RBP	11.71	□□□□□ -0.53
TUBE1-208	ENST00000604743	LSM2	Q9Y333	95 aa	Known RBP	11.71	□□□□□ -0.53
TUBE1-208	ENST00000604743	SESN1	Q9Y6P5	492 aa		11.71	□□□□□ -0.53
TUBE1-208	ENST00000604743	TRAV24	A0A0B4J272	114 aa		11.7	□□□□□ -0.54
TUBE1-208	ENST00000604743		A0A1W2PP11	408 aa		11.7	□□□□□ -0.54
TUBE1-208	ENST00000604743	CLPX	O76031	633 aa		11.7	□□□□□ -0.54
TUBE1-208	ENST00000604743	OR7C1	O76099	320 aa	Predicted RBP	11.7	□□□□□ -0.54
TUBE1-208	ENST00000604743	CRHBP	P24387	322 aa		11.7	□□□□□ -0.54
TUBE1-208	ENST00000604743	MAPK3	P27361	379 aa	Predicted RBP	11.7	□□□□□ -0.54
TUBE1-208	ENST00000604743	IRF3	Q14653	427 aa		11.7	□□□□□ -0.54
TUBE1-208	ENST00000604743	LRRC75B	Q2VPJ9	315 aa		11.7	□□□□□ -0.54
TUBE1-208	ENST00000604743	ACSM3	Q53FZ2	586 aa		11.7	□□□□□ -0.54
TUBE1-208	ENST00000604743	LIPK	Q5VXJ0	399 aa		11.7	□□□□□ -0.54
TUBE1-208	ENST00000604743	AWAT2	Q6E213	333 aa		11.7	□□□□□ -0.54
TUBE1-208	ENST00000604743	DHRS7B	Q6IAN0	325 aa	Predicted RBP	11.7	□□□□□ -0.54
TUBE1-208	ENST00000604743	GLIPR1L1	Q6UWM5	242 aa		11.7	□□□□□ -0.54
TUBE1-208	ENST00000604743	BAIAP2L2	Q6UXY1	529 aa		11.7	□□□□□ -0.54
TUBE1-208	ENST00000604743	GDPGP1	Q6ZNW5	385 aa		11.7	□□□□□ -0.54

Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms