RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 SNRPCP09234 159 aaKnown RBP15.9■□□□□ 0.14
UPF1-210ENST00000600689 RBP2P50120 134 aa15.9■□□□□ 0.14
UPF1-210ENST00000600689 UCP2P55851 309 aa15.9■□□□□ 0.14
UPF1-210ENST00000600689 LSM6P62312 80 aaKnown RBP15.9■□□□□ 0.14
UPF1-210ENST00000600689 ICAM4Q14773 271 aa15.9■□□□□ 0.14
UPF1-210ENST00000600689 FAM210BQ96KR6 192 aa15.9■□□□□ 0.14
UPF1-210ENST00000600689 CHRNA10Q9GZZ6 450 aa15.9■□□□□ 0.14
UPF1-210ENST00000600689 OPA3Q9H6K4 179 aa15.9■□□□□ 0.14
UPF1-210ENST00000600689 A0A087WZY1 265 aa15.89■□□□□ 0.13
UPF1-210ENST00000600689 SEC14L6B5MCN3 397 aa15.89■□□□□ 0.13
UPF1-210ENST00000600689 C3orf80F5H4A9 247 aa15.89■□□□□ 0.13
UPF1-210ENST00000600689 LCATP04180 440 aa15.89■□□□□ 0.13
UPF1-210ENST00000600689 HIST1H1BP16401 226 aaKnown RBP15.89■□□□□ 0.13
UPF1-210ENST00000600689 DDTP30046 118 aa15.89■□□□□ 0.13
UPF1-210ENST00000600689 GRB2P62993 217 aaKnown RBP15.89■□□□□ 0.13
UPF1-210ENST00000600689 PLPPR5Q32ZL2 321 aa15.89■□□□□ 0.13
UPF1-210ENST00000600689 WDR25Q64LD2 544 aaPredicted RBP15.89■□□□□ 0.13
UPF1-210ENST00000600689 LFNGQ8NES3 379 aa15.89■□□□□ 0.13
UPF1-210ENST00000600689 OR10AD1Q8NGE0 317 aa15.89■□□□□ 0.13
UPF1-210ENST00000600689 FAM186AA6NE01 2351 aa15.89■□□□□ 0.13
UPF1-210ENST00000600689 GLB1P16278 677 aa15.89■□□□□ 0.13
UPF1-210ENST00000600689 FUT3P21217 361 aa15.89■□□□□ 0.13
UPF1-210ENST00000600689 THNSL2Q86YJ6 484 aa15.89■□□□□ 0.13
UPF1-210ENST00000600689 SSC4DQ8WTU2 575 aa15.89■□□□□ 0.13
UPF1-210ENST00000600689 C18orf12Q96KH6 178 aa15.89■□□□□ 0.13
UPF1-210ENST00000600689 PACRGQ96M98 296 aaPredicted RBP15.89■□□□□ 0.13
UPF1-210ENST00000600689 DIDO1Q9BTC0 2240 aaKnown RBP15.89■□□□□ 0.13
UPF1-210ENST00000600689 RPS18P62269 152 aaKnown RBP15.88■□□□□ 0.13
UPF1-210ENST00000600689 IL13RA2Q14627 380 aa15.88■□□□□ 0.13
UPF1-210ENST00000600689 TMEM252Q8N6L7 170 aa15.88■□□□□ 0.13
UPF1-210ENST00000600689 OIT3Q8WWZ8 545 aa15.88■□□□□ 0.13
UPF1-210ENST00000600689 ZNF501Q96CX3 271 aaPredicted RBP15.88■□□□□ 0.13
UPF1-210ENST00000600689 SYT3Q9BQG1 590 aa15.88■□□□□ 0.13
UPF1-210ENST00000600689 FOXD3Q9UJU5 478 aaPredicted RBP15.88■□□□□ 0.13
UPF1-210ENST00000600689 ST3GAL6Q9Y274 331 aa15.88■□□□□ 0.13
UPF1-210ENST00000600689 ARHGAP21Q5T5U3 1957 aa15.88■□□□□ 0.13
UPF1-210ENST00000600689 TERTO14746 1132 aaKnown RBP15.88■□□□□ 0.13
UPF1-210ENST00000600689 HIST2H3PS2Q5TEC6 136 aa15.88■□□□□ 0.13
UPF1-210ENST00000600689 C1QL4Q86Z23 238 aa15.88■□□□□ 0.13
UPF1-210ENST00000600689 CPNE4Q96A23 557 aaPredicted RBP15.88■□□□□ 0.13
UPF1-210ENST00000600689 BORCS8Q96FH0 119 aa15.88■□□□□ 0.13
UPF1-210ENST00000600689 UNKLQ9H9P5 680 aaKnown RBP15.88■□□□□ 0.13
UPF1-210ENST00000600689 A0A1B0GX78 115 aa15.88■□□□□ 0.13
UPF1-210ENST00000600689 PROB1E7EW31 1015 aa15.88■□□□□ 0.13
UPF1-210ENST00000600689 HMGB3O15347 200 aaKnown RBP15.88■□□□□ 0.13
UPF1-210ENST00000600689 SUCLG1P53597 346 aaKnown RBP15.88■□□□□ 0.13
UPF1-210ENST00000600689 TMEM267Q0VDI3 215 aaPredicted RBP15.88■□□□□ 0.13
UPF1-210ENST00000600689 ZNF266Q14584 549 aa15.88■□□□□ 0.13
UPF1-210ENST00000600689 RSPO1Q2MKA7 263 aaPredicted RBP15.88■□□□□ 0.13
UPF1-210ENST00000600689 MVB12AQ96EY5 273 aa15.88■□□□□ 0.13
UPF1-210ENST00000600689 ADAMTS9Q9P2N4 1935 aa15.88■□□□□ 0.13
UPF1-210ENST00000600689 C3orf85A0A1B0GTC6 90 aa15.87■□□□□ 0.13
UPF1-210ENST00000600689 HSPA12AO43301 675 aa15.87■□□□□ 0.13
UPF1-210ENST00000600689 TMEM50AO95807 157 aa15.87■□□□□ 0.13
UPF1-210ENST00000600689 MSR1P21757 451 aa15.87■□□□□ 0.13
UPF1-210ENST00000600689 ZNF385CQ66K41 422 aaPredicted RBP15.87■□□□□ 0.13
UPF1-210ENST00000600689 DPPA2Q7Z7J5 298 aa15.87■□□□□ 0.13
UPF1-210ENST00000600689 SPEM1Q8N4L4 309 aa15.87■□□□□ 0.13
UPF1-210ENST00000600689 MISP3Q96FF7 219 aa15.87■□□□□ 0.13
UPF1-210ENST00000600689 WFIKKN1Q96NZ8 548 aa15.87■□□□□ 0.13
UPF1-210ENST00000600689 TM2D1Q9BX74 207 aa15.87■□□□□ 0.13
UPF1-210ENST00000600689 CALHM2Q9HA72 323 aa15.87■□□□□ 0.13
UPF1-210ENST00000600689 CACNA1EQ15878 2313 aa15.87■□□□□ 0.13
UPF1-210ENST00000600689 TSTD3H0UI37 97 aa15.87■□□□□ 0.13
UPF1-210ENST00000600689 TIAF1O95411 115 aa15.87■□□□□ 0.13
UPF1-210ENST00000600689 FOSL1P15407 271 aa15.87■□□□□ 0.13
UPF1-210ENST00000600689 CCL1P22362 96 aa15.87■□□□□ 0.13
UPF1-210ENST00000600689 MRPS34P82930 218 aaKnown RBP15.87■□□□□ 0.13
UPF1-210ENST00000600689 SHBQ15464 509 aa15.87■□□□□ 0.13
UPF1-210ENST00000600689 LRP11Q86VZ4 500 aa15.87■□□□□ 0.13
UPF1-210ENST00000600689 STX12Q86Y82 276 aa15.87■□□□□ 0.13
UPF1-210ENST00000600689 GJC3Q8NFK1 279 aa15.87■□□□□ 0.13
UPF1-210ENST00000600689 RSG1Q9BU20 258 aa15.87■□□□□ 0.13
UPF1-210ENST00000600689 ZNF665Q9H7R5 613 aa15.87■□□□□ 0.13
UPF1-210ENST00000600689 PI4KAP42356 2102 aa15.87■□□□□ 0.13
UPF1-210ENST00000600689 IGKV1-12A0A0C4DH73 117 aa15.86■□□□□ 0.13
UPF1-210ENST00000600689 SMCO3A2RU48 225 aa15.86■□□□□ 0.13
UPF1-210ENST00000600689 TLX3O43711 291 aaPredicted RBP15.86■□□□□ 0.13
UPF1-210ENST00000600689 IGKV1D-12P01611 117 aa15.86■□□□□ 0.13
UPF1-210ENST00000600689 CD200P41217 278 aa15.86■□□□□ 0.13
UPF1-210ENST00000600689 ZNF133P52736 654 aaPredicted RBP15.86■□□□□ 0.13
UPF1-210ENST00000600689 NEK7Q8TDX7 302 aa15.86■□□□□ 0.13
UPF1-210ENST00000600689 PIGCQ92535 297 aa15.86■□□□□ 0.13
UPF1-210ENST00000600689 GTF3AQ92664 365 aaKnown RBP15.86■□□□□ 0.13
UPF1-210ENST00000600689 OXGR1Q96P68 337 aa15.86■□□□□ 0.13
UPF1-210ENST00000600689 GAB2Q9UQC2 676 aa15.86■□□□□ 0.13
UPF1-210ENST00000600689 OR5T1Q8NG75 326 aa15.86■□□□□ 0.13
UPF1-210ENST00000600689 OR6X1Q8NH79 312 aa15.86■□□□□ 0.13
UPF1-210ENST00000600689 DNASE2BQ8WZ79 361 aa15.86■□□□□ 0.13
UPF1-210ENST00000600689 HLA-CQ95604 372 aa15.86■□□□□ 0.13
UPF1-210ENST00000600689 ATG101Q9BSB4 218 aa15.86■□□□□ 0.13
UPF1-210ENST00000600689 ZNF286AQ9HBT8 521 aa15.86■□□□□ 0.13
UPF1-210ENST00000600689 LRFN1Q9P244 771 aa15.86■□□□□ 0.13
UPF1-210ENST00000600689 CHST1O43916 411 aa15.86■□□□□ 0.13
UPF1-210ENST00000600689 ECI1P42126 302 aa15.86■□□□□ 0.13
UPF1-210ENST00000600689 SSX2Q16385 188 aa15.86■□□□□ 0.13
UPF1-210ENST00000600689 ZNF774Q6NX45 483 aa15.86■□□□□ 0.13
UPF1-210ENST00000600689 TBC1D26Q86UD7 250 aa15.86■□□□□ 0.13
UPF1-210ENST00000600689 LILRB2Q8N423 598 aa15.86■□□□□ 0.13
UPF1-210ENST00000600689 KDF1Q8NAX2 398 aaPredicted RBP15.86■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms