RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 CD177Q8N6Q3 437 aa12.27□□□□□ -0.45
VRK3-212ENST00000596814 ZFAND2BQ8WV99 257 aa12.27□□□□□ -0.45
VRK3-212ENST00000596814 DYRK2Q92630 601 aa12.27□□□□□ -0.45
VRK3-212ENST00000596814 CMSS1Q9BQ75 279 aaKnown RBP12.27□□□□□ -0.45
VRK3-212ENST00000596814 A0A1W2PQ09 198 aa12.26□□□□□ -0.45
VRK3-212ENST00000596814 LANCL1O43813 399 aa12.26□□□□□ -0.45
VRK3-212ENST00000596814 SSX5O60225 188 aa12.26□□□□□ -0.45
VRK3-212ENST00000596814 NDUFS7O75251 213 aa12.26□□□□□ -0.45
VRK3-212ENST00000596814 F12P00748 615 aaPredicted RBP12.26□□□□□ -0.45
VRK3-212ENST00000596814 GYPAP02724 150 aa12.26□□□□□ -0.45
VRK3-212ENST00000596814 GDNFP39905 211 aa12.26□□□□□ -0.45
VRK3-212ENST00000596814 INPP1P49441 399 aa12.26□□□□□ -0.45
VRK3-212ENST00000596814 BTG1P62324 171 aa12.26□□□□□ -0.45
VRK3-212ENST00000596814 PEG10Q86TG7 708 aaKnown RBP12.26□□□□□ -0.45
VRK3-212ENST00000596814 BPIFB2Q8N4F0 458 aa12.26□□□□□ -0.45
VRK3-212ENST00000596814 ASCC1Q8N9N2 400 aaKnown RBP12.26□□□□□ -0.45
VRK3-212ENST00000596814 PPA2Q9H2U2 334 aa12.26□□□□□ -0.45
VRK3-212ENST00000596814 KLK11Q9UBX7 282 aa12.26□□□□□ -0.45
VRK3-212ENST00000596814 METRNQ9UJH8 293 aa12.26□□□□□ -0.45
VRK3-212ENST00000596814 RBMX2Q9Y388 322 aaKnown RBP12.26□□□□□ -0.45
VRK3-212ENST00000596814 NKX6-3A6NJ46 265 aa12.25□□□□□ -0.45
VRK3-212ENST00000596814 PSPNO60542 156 aa12.25□□□□□ -0.45
VRK3-212ENST00000596814 RBBP9O75884 186 aa12.25□□□□□ -0.45
VRK3-212ENST00000596814 MDH2P40926 338 aaKnown RBP12.25□□□□□ -0.45
VRK3-212ENST00000596814 ACTBP60709 375 aa12.25□□□□□ -0.45
VRK3-212ENST00000596814 ACTG1P63261 375 aa12.25□□□□□ -0.45
VRK3-212ENST00000596814 IFITM3Q01628 133 aa12.25□□□□□ -0.45
VRK3-212ENST00000596814 ZMYND11Q15326 602 aa12.25□□□□□ -0.45
VRK3-212ENST00000596814 KCNJ8Q15842 424 aa12.25□□□□□ -0.45
VRK3-212ENST00000596814 SHEQ5VZ18 495 aa12.25□□□□□ -0.45
VRK3-212ENST00000596814 STEAP3Q658P3 488 aa12.25□□□□□ -0.45
VRK3-212ENST00000596814 DCDC5Q6ZRR9 648 aa12.25□□□□□ -0.45
VRK3-212ENST00000596814 HDHD3Q9BSH5 251 aaPredicted RBP12.25□□□□□ -0.45
VRK3-212ENST00000596814 LIME1Q9H400 295 aa12.25□□□□□ -0.45
VRK3-212ENST00000596814 CHODLQ9H9P2 273 aa12.25□□□□□ -0.45
VRK3-212ENST00000596814 C12orf4Q9NQ89 552 aa12.25□□□□□ -0.45
VRK3-212ENST00000596814 IFT46Q9NQC8 304 aa12.25□□□□□ -0.45
VRK3-212ENST00000596814 ETAA1Q9NY74 926 aa12.25□□□□□ -0.45
VRK3-212ENST00000596814 MTFP1Q9UDX5 166 aa12.25□□□□□ -0.45
VRK3-212ENST00000596814 TMEM82A0PJX8 343 aa12.25□□□□□ -0.45
VRK3-212ENST00000596814 ORC5O43913 435 aa12.25□□□□□ -0.45
VRK3-212ENST00000596814 CBX5P45973 191 aa12.25□□□□□ -0.45
VRK3-212ENST00000596814 SSBP1Q04837 148 aaKnown RBP12.25□□□□□ -0.45
VRK3-212ENST00000596814 ATXN7L3Q14CW9 347 aaPredicted RBP12.25□□□□□ -0.45
VRK3-212ENST00000596814 ZNF57Q68EA5 555 aaPredicted RBP12.25□□□□□ -0.45
VRK3-212ENST00000596814 C17orf107Q6ZR85 190 aa12.25□□□□□ -0.45
VRK3-212ENST00000596814 LYSMD2Q8IV50 215 aa12.25□□□□□ -0.45
VRK3-212ENST00000596814 ZNF561Q8N587 486 aa12.25□□□□□ -0.45
VRK3-212ENST00000596814 NRGNQ92686 78 aa12.25□□□□□ -0.45
VRK3-212ENST00000596814 SDSLQ96GA7 329 aa12.25□□□□□ -0.45
VRK3-212ENST00000596814 TIMD4Q96H15 378 aa12.25□□□□□ -0.45
VRK3-212ENST00000596814 CHST6Q9GZX3 395 aa12.25□□□□□ -0.45
VRK3-212ENST00000596814 DNTTIP1Q9H147 329 aa12.25□□□□□ -0.45
VRK3-212ENST00000596814 ZNF665Q9H7R5 613 aa12.25□□□□□ -0.45
VRK3-212ENST00000596814 MYOZ1Q9NP98 299 aaPredicted RBP12.25□□□□□ -0.45
VRK3-212ENST00000596814 CRYBG3Q68DQ2 2970 aa12.25□□□□□ -0.45
VRK3-212ENST00000596814 FASNP49327 2511 aaKnown RBP12.24□□□□□ -0.45
VRK3-212ENST00000596814 ZNF737O75373 536 aa12.24□□□□□ -0.45
VRK3-212ENST00000596814 FSTL3O95633 263 aa12.24□□□□□ -0.45
VRK3-212ENST00000596814 IGHV2-70P01814 119 aa12.24□□□□□ -0.45
VRK3-212ENST00000596814 AMY2BP19961 511 aa12.24□□□□□ -0.45
VRK3-212ENST00000596814 RCVRNP35243 200 aa12.24□□□□□ -0.45
VRK3-212ENST00000596814 OR3A1P47881 315 aa12.24□□□□□ -0.45
VRK3-212ENST00000596814 KCNJ3P48549 501 aa12.24□□□□□ -0.45
VRK3-212ENST00000596814 CARTPTQ16568 116 aa12.24□□□□□ -0.45
VRK3-212ENST00000596814 HIST2H2BCQ6DN03 193 aa12.24□□□□□ -0.45
VRK3-212ENST00000596814 ZNF788Q6ZQV5 615 aa12.24□□□□□ -0.45
VRK3-212ENST00000596814 PPP1R35Q8TAP8 253 aa12.24□□□□□ -0.45
VRK3-212ENST00000596814 SNX22Q96L94 193 aa12.24□□□□□ -0.45
VRK3-212ENST00000596814 GAFA1Q96PS6 74 aa12.24□□□□□ -0.45
VRK3-212ENST00000596814 CCL13Q99616 98 aa12.24□□□□□ -0.45
VRK3-212ENST00000596814 CHMP1AQ9HD42 196 aaPredicted RBP12.24□□□□□ -0.45
VRK3-212ENST00000596814 ZNF701Q9NV72 531 aaPredicted RBP12.24□□□□□ -0.45
VRK3-212ENST00000596814 PTPN13Q12923 2485 aa12.24□□□□□ -0.45
VRK3-212ENST00000596814 ISPDA4D126 451 aa12.23□□□□□ -0.45
VRK3-212ENST00000596814 PPIHO43447 177 aaKnown RBP12.23□□□□□ -0.45
VRK3-212ENST00000596814 IGHV4-39P01824 125 aa12.23□□□□□ -0.45
VRK3-212ENST00000596814 FCER2P06734 321 aa12.23□□□□□ -0.45
VRK3-212ENST00000596814 GSTT2BP0CG30 244 aa12.23□□□□□ -0.45
VRK3-212ENST00000596814 DTYMKP23919 212 aa12.23□□□□□ -0.45
VRK3-212ENST00000596814 IL13RA1P78552 427 aa12.23□□□□□ -0.45
VRK3-212ENST00000596814 GRK1Q15835 563 aa12.23□□□□□ -0.45
VRK3-212ENST00000596814 ATPAF1Q5TC12 328 aaPredicted RBP12.23□□□□□ -0.45
VRK3-212ENST00000596814 TOMM5Q8N4H5 51 aa12.23□□□□□ -0.45
VRK3-212ENST00000596814 GVQW1Q8N7I0 195 aa12.23□□□□□ -0.45
VRK3-212ENST00000596814 ZNRF1Q8ND25 227 aa12.23□□□□□ -0.45
VRK3-212ENST00000596814 OR4S1Q8NGB4 309 aa12.23□□□□□ -0.45
VRK3-212ENST00000596814 PLPPR1Q8TBJ4 325 aa12.23□□□□□ -0.45
VRK3-212ENST00000596814 RAB1CQ92928 201 aa12.23□□□□□ -0.45
VRK3-212ENST00000596814 OCSTAMPQ9BR26 566 aa12.23□□□□□ -0.45
VRK3-212ENST00000596814 TMEM246Q9BRR3 403 aa12.23□□□□□ -0.45
VRK3-212ENST00000596814 TMEM165Q9HC07 324 aa12.23□□□□□ -0.45
VRK3-212ENST00000596814 TAS2R8Q9NYW2 309 aa12.23□□□□□ -0.45
VRK3-212ENST00000596814 ANAPC10Q9UM13 185 aa12.23□□□□□ -0.45
VRK3-212ENST00000596814 MAB21L2Q9Y586 359 aa12.23□□□□□ -0.45
VRK3-212ENST00000596814 LINC00854A0A1B0GVQ3 168 aa12.23□□□□□ -0.45
VRK3-212ENST00000596814 A0A1B0GW55 424 aa12.23□□□□□ -0.45
VRK3-212ENST00000596814 K7N7A8 449 aa12.23□□□□□ -0.45
VRK3-212ENST00000596814 SIGLEC5O15389 551 aa12.23□□□□□ -0.45
VRK3-212ENST00000596814 TMPRSS2O15393 492 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms