RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 NUDT15Q9NV35 164 aa8.6□□□□□ -1.03
SS18-207ENST00000577636 SCP2D1Q9UJQ7 156 aa8.6□□□□□ -1.03
SS18-207ENST00000577636 ST3GAL6Q9Y274 331 aa8.6□□□□□ -1.03
SS18-207ENST00000577636 POLDIP2Q9Y2S7 368 aa8.6□□□□□ -1.03
SS18-207ENST00000577636 YLPM1P49750 1951 aaKnown RBP8.59□□□□□ -1.03
SS18-207ENST00000577636 IGHV4-61A0A0C4DH41 118 aa8.59□□□□□ -1.03
SS18-207ENST00000577636 PLSCR5A0PG75 271 aa8.59□□□□□ -1.03
SS18-207ENST00000577636 LRP5LA4QPB2 252 aa8.59□□□□□ -1.03
SS18-207ENST00000577636 TMEM210A6NLX4 147 aa8.59□□□□□ -1.03
SS18-207ENST00000577636 J3QT63 122 aa8.59□□□□□ -1.03
SS18-207ENST00000577636 PRAF2O60831 178 aa8.59□□□□□ -1.03
SS18-207ENST00000577636 KITLGP21583 273 aa8.59□□□□□ -1.03
SS18-207ENST00000577636 APOBEC3AP31941 199 aaPredicted RBP8.59□□□□□ -1.03
SS18-207ENST00000577636 CCR6P51684 374 aa8.59□□□□□ -1.03
SS18-207ENST00000577636 IL24Q13007 206 aa8.59□□□□□ -1.03
SS18-207ENST00000577636 ZMYND11Q15326 602 aa8.59□□□□□ -1.03
SS18-207ENST00000577636 RBMS2Q15434 407 aaKnown RBP8.59□□□□□ -1.03
SS18-207ENST00000577636 TATDN3Q17R31 274 aa8.59□□□□□ -1.03
SS18-207ENST00000577636 MBNL2Q5VZF2 373 aaKnown RBP8.59□□□□□ -1.03
SS18-207ENST00000577636 HAGHLQ6PII5 290 aaPredicted RBP8.59□□□□□ -1.03
SS18-207ENST00000577636 FIP1L1Q6UN15 594 aaKnown RBP8.59□□□□□ -1.03
SS18-207ENST00000577636 TMEM17Q86X19 198 aa8.59□□□□□ -1.03
SS18-207ENST00000577636 Q8IYB0 196 aa8.59□□□□□ -1.03
SS18-207ENST00000577636 SLAMF9Q96A28 289 aa8.59□□□□□ -1.03
SS18-207ENST00000577636 MARS2Q96GW9 593 aaKnown RBP8.59□□□□□ -1.03
SS18-207ENST00000577636 ARHGAP5-AS1Q96IT6 56 aa8.59□□□□□ -1.03
SS18-207ENST00000577636 PRRT1Q99946 306 aa8.59□□□□□ -1.03
SS18-207ENST00000577636 PECRQ9BY49 303 aa8.59□□□□□ -1.03
SS18-207ENST00000577636 SPACA1Q9HBV2 294 aa8.59□□□□□ -1.03
SS18-207ENST00000577636 PURGQ9UJV8 347 aaKnown RBP8.59□□□□□ -1.03
SS18-207ENST00000577636 HSF4Q9ULV5 492 aa8.59□□□□□ -1.03
SS18-207ENST00000577636 ANK2Q01484 3957 aa8.59□□□□□ -1.03
SS18-207ENST00000577636 TRAV6A0A075B6T7 132 aa8.58□□□□□ -1.04
SS18-207ENST00000577636 A0A1W2PP11 408 aa8.58□□□□□ -1.04
SS18-207ENST00000577636 MFNGO00587 321 aa8.58□□□□□ -1.04
SS18-207ENST00000577636 CD3DP04234 171 aa8.58□□□□□ -1.04
SS18-207ENST00000577636 AMY2AP04746 511 aa8.58□□□□□ -1.04
SS18-207ENST00000577636 TRAPPC2P0DI81 140 aa8.58□□□□□ -1.04
SS18-207ENST00000577636 TRAPPC2BP0DI82 140 aa8.58□□□□□ -1.04
SS18-207ENST00000577636 AMY2BP19961 511 aa8.58□□□□□ -1.04
SS18-207ENST00000577636 HLA-DMAP28067 261 aa8.58□□□□□ -1.04
SS18-207ENST00000577636 GLRXP35754 106 aa8.58□□□□□ -1.04
SS18-207ENST00000577636 OR3A3P47888 321 aa8.58□□□□□ -1.04
SS18-207ENST00000577636 RBM11P57052 281 aaKnown RBP8.58□□□□□ -1.04
SS18-207ENST00000577636 KLF3P57682 345 aaPredicted RBP8.58□□□□□ -1.04
SS18-207ENST00000577636 RAB25P57735 213 aa8.58□□□□□ -1.04
SS18-207ENST00000577636 TAS2R46P59540 309 aa8.58□□□□□ -1.04
SS18-207ENST00000577636 ERVS71-1P61550 626 aa8.58□□□□□ -1.04
SS18-207ENST00000577636 PSG7Q13046 419 aa8.58□□□□□ -1.04
SS18-207ENST00000577636 TAF9Q16594 264 aa8.58□□□□□ -1.04
SS18-207ENST00000577636 ELP2Q6IA86 826 aa8.58□□□□□ -1.04
SS18-207ENST00000577636 LINC00596Q86U02 117 aa8.58□□□□□ -1.04
SS18-207ENST00000577636 CALHM1Q8IU99 346 aa8.58□□□□□ -1.04
SS18-207ENST00000577636 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP8.58□□□□□ -1.04
SS18-207ENST00000577636 OR4C16Q8NGL9 310 aa8.58□□□□□ -1.04
SS18-207ENST00000577636 OR13G1Q8NGZ3 307 aa8.58□□□□□ -1.04
SS18-207ENST00000577636 NUDCD2Q8WVJ2 157 aa8.58□□□□□ -1.04
SS18-207ENST00000577636 HPSE2Q8WWQ2 592 aa8.58□□□□□ -1.04
SS18-207ENST00000577636 UPRTQ96BW1 309 aa8.58□□□□□ -1.04
SS18-207ENST00000577636 SLC25A21Q9BQT8 299 aaPredicted RBP8.58□□□□□ -1.04
SS18-207ENST00000577636 OCSTAMPQ9BR26 566 aa8.58□□□□□ -1.04
SS18-207ENST00000577636 GINS4Q9BRT9 223 aa8.58□□□□□ -1.04
SS18-207ENST00000577636 C20orf85Q9H1P6 137 aa8.58□□□□□ -1.04
SS18-207ENST00000577636 GPN1Q9HCN4 374 aaPredicted RBP8.58□□□□□ -1.04
SS18-207ENST00000577636 MALRD1Q5VYJ5 2156 aa8.58□□□□□ -1.04
SS18-207ENST00000577636 A0A0A6YYD4 124 aa8.57□□□□□ -1.04
SS18-207ENST00000577636 HMX3A6NHT5 357 aa8.57□□□□□ -1.04
SS18-207ENST00000577636 VWC2LB2RUY7 222 aa8.57□□□□□ -1.04
SS18-207ENST00000577636 PDCD6O75340 191 aa8.57□□□□□ -1.04
SS18-207ENST00000577636 PEX14O75381 377 aa8.57□□□□□ -1.04
SS18-207ENST00000577636 CCNKO75909 580 aa8.57□□□□□ -1.04
SS18-207ENST00000577636 OR7C1O76099 320 aaPredicted RBP8.57□□□□□ -1.04
SS18-207ENST00000577636 NDUFB6O95139 128 aa8.57□□□□□ -1.04
SS18-207ENST00000577636 FUT3P21217 361 aa8.57□□□□□ -1.04
SS18-207ENST00000577636 CALCRP30988 508 aa8.57□□□□□ -1.04
SS18-207ENST00000577636 BTCP35070 178 aa8.57□□□□□ -1.04
SS18-207ENST00000577636 MPV17P39210 176 aa8.57□□□□□ -1.04
SS18-207ENST00000577636 PMELP40967 661 aa8.57□□□□□ -1.04
SS18-207ENST00000577636 FGF12P61328 243 aa8.57□□□□□ -1.04
SS18-207ENST00000577636 MPV17LQ2QL34 196 aa8.57□□□□□ -1.04
SS18-207ENST00000577636 PLAC9Q5JTB6 97 aa8.57□□□□□ -1.04
SS18-207ENST00000577636 ATAD3CQ5T2N8 411 aa8.57□□□□□ -1.04
SS18-207ENST00000577636 CRIP3Q6Q6R5 217 aa8.57□□□□□ -1.04
SS18-207ENST00000577636 BPIFB2Q8N4F0 458 aa8.57□□□□□ -1.04
SS18-207ENST00000577636 OR5H2Q8NGV7 314 aa8.57□□□□□ -1.04
SS18-207ENST00000577636 OR4K15Q8NH41 348 aa8.57□□□□□ -1.04
SS18-207ENST00000577636 CHAC2Q8WUX2 184 aa8.57□□□□□ -1.04
SS18-207ENST00000577636 CCDC107Q8WV48 283 aa8.57□□□□□ -1.04
SS18-207ENST00000577636 HPS1Q92902 700 aa8.57□□□□□ -1.04
SS18-207ENST00000577636 EMG1Q92979 244 aaKnown RBP8.57□□□□□ -1.04
SS18-207ENST00000577636 DVL3Q92997 716 aaPredicted RBP8.57□□□□□ -1.04
SS18-207ENST00000577636 CMSS1Q9BQ75 279 aaKnown RBP8.57□□□□□ -1.04
SS18-207ENST00000577636 BPESC1Q9GZL8 116 aa8.57□□□□□ -1.04
SS18-207ENST00000577636 CHST6Q9GZX3 395 aa8.57□□□□□ -1.04
SS18-207ENST00000577636 OR51I2Q9H344 312 aa8.57□□□□□ -1.04
SS18-207ENST00000577636 ZNF442Q9H7R0 627 aa8.57□□□□□ -1.04
SS18-207ENST00000577636 GLS2Q9UI32 602 aa8.57□□□□□ -1.04
SS18-207ENST00000577636 DUSP13Q9UII6 198 aa8.57□□□□□ -1.04
SS18-207ENST00000577636 ALG5Q9Y673 324 aa8.57□□□□□ -1.04
SS18-207ENST00000577636 IGKV1-12A0A0C4DH73 117 aa8.56□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms