RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 ZNF665Q9H7R5 613 aa8.38□□□□□ -1.07
CCDC40-212ENST00000574799 CCDC85CA6NKD9 419 aa8.37□□□□□ -1.07
CCDC40-212ENST00000574799 TMEM14DPA8MWL7 114 aa8.37□□□□□ -1.07
CCDC40-212ENST00000574799 PDGFBP01127 241 aaPredicted RBP8.37□□□□□ -1.07
CCDC40-212ENST00000574799 CCKARP32238 428 aa8.37□□□□□ -1.07
CCDC40-212ENST00000574799 DYNLT3P51808 116 aa8.37□□□□□ -1.07
CCDC40-212ENST00000574799 TMEM50BP56557 158 aa8.37□□□□□ -1.07
CCDC40-212ENST00000574799 PLCXD2Q0VAA5 305 aa8.37□□□□□ -1.07
CCDC40-212ENST00000574799 PCK2Q16822 640 aa8.37□□□□□ -1.07
CCDC40-212ENST00000574799 PRTGQ2VWP7 1150 aa8.37□□□□□ -1.07
CCDC40-212ENST00000574799 DNLZQ5SXM8 178 aa8.37□□□□□ -1.07
CCDC40-212ENST00000574799 RTL6Q6ICC9 239 aa8.37□□□□□ -1.07
CCDC40-212ENST00000574799 ZNF100Q8IYN0 542 aa8.37□□□□□ -1.07
CCDC40-212ENST00000574799 LRRC75AQ8NAA5 344 aa8.37□□□□□ -1.07
CCDC40-212ENST00000574799 EXTL1Q92935 676 aa8.37□□□□□ -1.07
CCDC40-212ENST00000574799 CCNL2Q96S94 520 aaPredicted RBP8.37□□□□□ -1.07
CCDC40-212ENST00000574799 TXN2Q99757 166 aa8.37□□□□□ -1.07
CCDC40-212ENST00000574799 PCGF1Q9BSM1 259 aa8.37□□□□□ -1.07
CCDC40-212ENST00000574799 OR51I2Q9H344 312 aa8.37□□□□□ -1.07
CCDC40-212ENST00000574799 RIMS4Q9H426 269 aaPredicted RBP8.37□□□□□ -1.07
CCDC40-212ENST00000574799 PLEKHF2Q9H8W4 249 aa8.37□□□□□ -1.07
CCDC40-212ENST00000574799 NECAP2Q9NVZ3 263 aa8.37□□□□□ -1.07
CCDC40-212ENST00000574799 PTPRZ1P23471 2315 aaPredicted RBP8.37□□□□□ -1.07
CCDC40-212ENST00000574799 HMGB3O15347 200 aaKnown RBP8.37□□□□□ -1.07
CCDC40-212ENST00000574799 ZNF217O75362 1048 aa8.37□□□□□ -1.07
CCDC40-212ENST00000574799 CT45A8P0DMV1 189 aa8.37□□□□□ -1.07
CCDC40-212ENST00000574799 CT45A9P0DMV2 189 aa8.37□□□□□ -1.07
CCDC40-212ENST00000574799 SRFP11831 508 aa8.37□□□□□ -1.07
CCDC40-212ENST00000574799 CD82P27701 267 aa8.37□□□□□ -1.07
CCDC40-212ENST00000574799 TFPI2P48307 235 aa8.37□□□□□ -1.07
CCDC40-212ENST00000574799 TDGF1P3P51864 188 aa8.37□□□□□ -1.07
CCDC40-212ENST00000574799 HNRNPKP61978 463 aaKnown RBP eCLIP8.37□□□□□ -1.07
CCDC40-212ENST00000574799 ICAM4Q14773 271 aa8.37□□□□□ -1.07
CCDC40-212ENST00000574799 CT45A2Q5DJT8 189 aa8.37□□□□□ -1.07
CCDC40-212ENST00000574799 UEVLDQ8IX04 471 aa8.37□□□□□ -1.07
CCDC40-212ENST00000574799 DEFB119Q8N690 84 aa8.37□□□□□ -1.07
CCDC40-212ENST00000574799 OR10J5Q8NHC4 309 aa8.37□□□□□ -1.07
CCDC40-212ENST00000574799 R3HDM4Q96D70 268 aa8.37□□□□□ -1.07
CCDC40-212ENST00000574799 SPOCK3Q9BQ16 436 aa8.37□□□□□ -1.07
CCDC40-212ENST00000574799 KLHDC3Q9BQ90 382 aa8.37□□□□□ -1.07
CCDC40-212ENST00000574799 NXF5Q9H1B4 397 aaKnown RBP8.37□□□□□ -1.07
CCDC40-212ENST00000574799 ZNF442Q9H7R0 627 aa8.37□□□□□ -1.07
CCDC40-212ENST00000574799 G6PC2Q9NQR9 355 aa8.37□□□□□ -1.07
CCDC40-212ENST00000574799 VDAC3Q9Y277 283 aa8.37□□□□□ -1.07
CCDC40-212ENST00000574799 A0A1W2PNV4 684 aa8.37□□□□□ -1.07
CCDC40-212ENST00000574799 C17orf51A8MQB3 221 aa8.37□□□□□ -1.07
CCDC40-212ENST00000574799 HLA-DOBP13765 273 aa8.37□□□□□ -1.07
CCDC40-212ENST00000574799 HNF1AP20823 631 aa8.37□□□□□ -1.07
CCDC40-212ENST00000574799 BIDP55957 195 aa8.37□□□□□ -1.07
CCDC40-212ENST00000574799 HIST1H3AP68431 136 aa8.37□□□□□ -1.07
CCDC40-212ENST00000574799 KCNIP4Q6PIL6 250 aa8.37□□□□□ -1.07
CCDC40-212ENST00000574799 BRICD5Q6PL45 260 aa8.37□□□□□ -1.07
CCDC40-212ENST00000574799 C16orf82Q7Z2V1 217 aa8.37□□□□□ -1.07
CCDC40-212ENST00000574799 RNF144BQ7Z419 303 aa8.37□□□□□ -1.07
CCDC40-212ENST00000574799 C20orf196Q8IYI0 205 aa8.37□□□□□ -1.07
CCDC40-212ENST00000574799 C11orf40Q8WZ69 217 aa8.37□□□□□ -1.07
CCDC40-212ENST00000574799 C8orf44Q96CB5 159 aa8.37□□□□□ -1.07
CCDC40-212ENST00000574799 ADGRG7Q96K78 797 aa8.37□□□□□ -1.07
CCDC40-212ENST00000574799 VPS25Q9BRG1 176 aa8.37□□□□□ -1.07
CCDC40-212ENST00000574799 WWTR1Q9GZV5 400 aa8.37□□□□□ -1.07
CCDC40-212ENST00000574799 NAGKQ9UJ70 344 aa8.37□□□□□ -1.07
CCDC40-212ENST00000574799 RBM7Q9Y580 266 aaKnown RBP8.37□□□□□ -1.07
CCDC40-212ENST00000574799 ASXL3Q9C0F0 2248 aa8.36□□□□□ -1.07
CCDC40-212ENST00000574799 SERPINE3A8MV23 424 aa8.36□□□□□ -1.07
CCDC40-212ENST00000574799 OR10J1P30954 320 aa8.36□□□□□ -1.07
CCDC40-212ENST00000574799 DAP3P51398 398 aaKnown RBP8.36□□□□□ -1.07
CCDC40-212ENST00000574799 ARF1P84077 181 aaKnown RBP8.36□□□□□ -1.07
CCDC40-212ENST00000574799 LYPD6BQ8NI32 183 aa8.36□□□□□ -1.07
CCDC40-212ENST00000574799 CYYR1Q96J86 154 aa8.36□□□□□ -1.07
CCDC40-212ENST00000574799 VAMP8Q9BV40 100 aa8.36□□□□□ -1.07
CCDC40-212ENST00000574799 PECRQ9BY49 303 aa8.36□□□□□ -1.07
CCDC40-212ENST00000574799 DNAJC4Q9NNZ3 241 aa8.36□□□□□ -1.07
CCDC40-212ENST00000574799 SLC39A9Q9NUM3 307 aa8.36□□□□□ -1.07
CCDC40-212ENST00000574799 SEMA5BQ9P283 1151 aa8.36□□□□□ -1.07
CCDC40-212ENST00000574799 IGLV1-36A0A0B4J1U3 117 aa8.36□□□□□ -1.07
CCDC40-212ENST00000574799 TRAV34A0A0B4J273 112 aa8.36□□□□□ -1.07
CCDC40-212ENST00000574799 A0A0J9YY10 115 aa8.36□□□□□ -1.07
CCDC40-212ENST00000574799 ZNF320A2RRD8 509 aa8.36□□□□□ -1.07
CCDC40-212ENST00000574799 TMEM150CB9EJG8 249 aa8.36□□□□□ -1.07
CCDC40-212ENST00000574799 WISP1O95388 367 aa8.36□□□□□ -1.07
CCDC40-212ENST00000574799 MT-ATP6P00846 226 aa8.36□□□□□ -1.07
CCDC40-212ENST00000574799 WNT5AP41221 380 aa8.36□□□□□ -1.07
CCDC40-212ENST00000574799 ZNF121P58317 390 aaPredicted RBP8.36□□□□□ -1.07
CCDC40-212ENST00000574799 ZNF154Q13106 437 aa8.36□□□□□ -1.07
CCDC40-212ENST00000574799 ACOT6Q3I5F7 207 aaPredicted RBP8.36□□□□□ -1.07
CCDC40-212ENST00000574799 ZNF845Q96IR2 970 aaPredicted RBP8.36□□□□□ -1.07
CCDC40-212ENST00000574799 ACTR3CQ9C0K3 210 aaPredicted RBP8.36□□□□□ -1.07
CCDC40-212ENST00000574799 A0A0A6YYD4 124 aa8.36□□□□□ -1.07
CCDC40-212ENST00000574799 C2orf72A6NCS6 295 aa8.36□□□□□ -1.07
CCDC40-212ENST00000574799 ANKUB1A6NFN9 424 aa8.36□□□□□ -1.07
CCDC40-212ENST00000574799 TNFP01375 233 aa8.36□□□□□ -1.07
CCDC40-212ENST00000574799 IGLV3-21P80748 117 aaPredicted RBP8.36□□□□□ -1.07
CCDC40-212ENST00000574799 KISS1Q15726 138 aa8.36□□□□□ -1.07
CCDC40-212ENST00000574799 BSXQ3C1V8 233 aa8.36□□□□□ -1.07
CCDC40-212ENST00000574799 TEX38Q6PEX7 206 aa8.36□□□□□ -1.07
CCDC40-212ENST00000574799 LIAT1Q6ZQX7 453 aa8.36□□□□□ -1.07
CCDC40-212ENST00000574799 OR11L1Q8NGX0 322 aa8.36□□□□□ -1.07
CCDC40-212ENST00000574799 LHX4Q969G2 390 aa8.36□□□□□ -1.07
CCDC40-212ENST00000574799 SRD5A3Q9H8P0 318 aa8.36□□□□□ -1.07
CCDC40-212ENST00000574799 SLC2A9Q9NRM0 540 aa8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms