RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 C20orf85Q9H1P6 137 aa2.35□□□□□ -2.03
VPS35-209ENST00000568642 BOLA2Q9H3K6 86 aa2.35□□□□□ -2.03
VPS35-209ENST00000568642 ZNF442Q9H7R0 627 aa2.35□□□□□ -2.03
VPS35-209ENST00000568642 ZNF430Q9H8G1 570 aaPredicted RBP2.35□□□□□ -2.03
VPS35-209ENST00000568642 CAB39LQ9H9S4 337 aa2.35□□□□□ -2.03
VPS35-209ENST00000568642 EBF2Q9HAK2 575 aa2.35□□□□□ -2.03
VPS35-209ENST00000568642 UBE2TQ9NPD8 197 aaPredicted RBP2.35□□□□□ -2.03
VPS35-209ENST00000568642 BATF3Q9NR55 127 aa2.35□□□□□ -2.03
VPS35-209ENST00000568642 FGFR1OP2Q9NVK5 253 aa2.35□□□□□ -2.03
VPS35-209ENST00000568642 TAS2R13Q9NYV9 303 aa2.35□□□□□ -2.03
VPS35-209ENST00000568642 SPRR3Q9UBC9 169 aa2.35□□□□□ -2.03
VPS35-209ENST00000568642 KLK11Q9UBX7 282 aa2.35□□□□□ -2.03
VPS35-209ENST00000568642 C19orf25Q9UFG5 118 aaPredicted RBP2.35□□□□□ -2.03
VPS35-209ENST00000568642 BTNL2Q9UIR0 455 aa2.35□□□□□ -2.03
VPS35-209ENST00000568642 RAB26Q9ULW5 256 aa2.35□□□□□ -2.03
VPS35-209ENST00000568642 MMP17Q9ULZ9 603 aa2.35□□□□□ -2.03
VPS35-209ENST00000568642 MYOFQ9NZM1 2061 aa2.35□□□□□ -2.03
VPS35-209ENST00000568642 A0A087WUJ7 227 aa2.34□□□□□ -2.03
VPS35-209ENST00000568642 A6NIZ1 184 aa2.34□□□□□ -2.03
VPS35-209ENST00000568642 CLDN24A6NM45 220 aa2.34□□□□□ -2.03
VPS35-209ENST00000568642 ZNF593O00488 134 aaPredicted RBP2.34□□□□□ -2.03
VPS35-209ENST00000568642 UBDO15205 165 aa2.34□□□□□ -2.03
VPS35-209ENST00000568642 SURF4O15260 269 aa2.34□□□□□ -2.03
VPS35-209ENST00000568642 NUPL2O15504 423 aaKnown RBP2.34□□□□□ -2.03
VPS35-209ENST00000568642 CRXO43186 299 aaPredicted RBP2.34□□□□□ -2.03
VPS35-209ENST00000568642 RAD51CO43502 376 aa2.34□□□□□ -2.03
VPS35-209ENST00000568642 HCRTR1O43613 425 aa2.34□□□□□ -2.03
VPS35-209ENST00000568642 CHP2O43745 196 aa2.34□□□□□ -2.03
VPS35-209ENST00000568642 EDIL3O43854 480 aa2.34□□□□□ -2.03
VPS35-209ENST00000568642 FKBP6O75344 327 aa2.34□□□□□ -2.03
VPS35-209ENST00000568642 TNFSF15O95150 251 aa2.34□□□□□ -2.03
VPS35-209ENST00000568642 RPLP0P05388 317 aaKnown RBP2.34□□□□□ -2.03
VPS35-209ENST00000568642 OR8U9P0C7N5 309 aa2.34□□□□□ -2.03
VPS35-209ENST00000568642 UCHL3P15374 230 aa2.34□□□□□ -2.03
VPS35-209ENST00000568642 CELP19835 753 aa2.34□□□□□ -2.03
VPS35-209ENST00000568642 CD38P28907 300 aa2.34□□□□□ -2.03
VPS35-209ENST00000568642 TSPOP30536 169 aa2.34□□□□□ -2.03
VPS35-209ENST00000568642 CEACAM8P31997 349 aaPredicted RBP2.34□□□□□ -2.03
VPS35-209ENST00000568642 BTCP35070 178 aa2.34□□□□□ -2.03
VPS35-209ENST00000568642 ARR3P36575 388 aa2.34□□□□□ -2.03
VPS35-209ENST00000568642 MYCNOSP40205 109 aa2.34□□□□□ -2.03
VPS35-209ENST00000568642 ELK3P41970 407 aa2.34□□□□□ -2.03
VPS35-209ENST00000568642 RPL34P49207 117 aaKnown RBP2.34□□□□□ -2.03
VPS35-209ENST00000568642 RAB8AP61006 207 aa2.34□□□□□ -2.03
VPS35-209ENST00000568642 SNRPD1P62314 119 aaKnown RBP2.34□□□□□ -2.03
VPS35-209ENST00000568642 MRPS11P82912 194 aaKnown RBP2.34□□□□□ -2.03
VPS35-209ENST00000568642 IFITM2Q01629 132 aa2.34□□□□□ -2.03
VPS35-209ENST00000568642 ZNF92Q03936 586 aa2.34□□□□□ -2.03
VPS35-209ENST00000568642 BAXQ07812 192 aa2.34□□□□□ -2.03
VPS35-209ENST00000568642 ST3GAL4Q11206 333 aa2.34□□□□□ -2.03
VPS35-209ENST00000568642 KCNJ11Q14654 390 aa2.34□□□□□ -2.03
VPS35-209ENST00000568642 OR7A5Q15622 319 aa2.34□□□□□ -2.03
VPS35-209ENST00000568642 TTLL9Q3SXZ7 439 aa2.34□□□□□ -2.03
VPS35-209ENST00000568642 FAM153CQ494X1 144 aa2.34□□□□□ -2.03
VPS35-209ENST00000568642 CLLU1OSQ5K130 101 aa2.34□□□□□ -2.03
VPS35-209ENST00000568642 C10orf25Q5T742 122 aa2.34□□□□□ -2.03
VPS35-209ENST00000568642 LPCAT4Q643R3 524 aa2.34□□□□□ -2.03
VPS35-209ENST00000568642 WDR74Q6RFH5 385 aaPredicted RBP2.34□□□□□ -2.03
VPS35-209ENST00000568642 C12orf54Q6X4T0 127 aa2.34□□□□□ -2.03
VPS35-209ENST00000568642 Q6ZRP5 223 aa2.34□□□□□ -2.03
VPS35-209ENST00000568642 GDPD3Q7L5L3 318 aa2.34□□□□□ -2.03
VPS35-209ENST00000568642 CEACAM19Q7Z692 300 aa2.34□□□□□ -2.03
VPS35-209ENST00000568642 LACC1Q8IV20 430 aa2.34□□□□□ -2.03
VPS35-209ENST00000568642 LRRC18Q8N456 261 aa2.34□□□□□ -2.03
VPS35-209ENST00000568642 C12orf29Q8N999 325 aa2.34□□□□□ -2.03
VPS35-209ENST00000568642 C11orf72Q8NBR9 251 aa2.34□□□□□ -2.03
VPS35-209ENST00000568642 TMEM35BQ8NCS4 154 aa2.34□□□□□ -2.03
VPS35-209ENST00000568642 WFDC11Q8NEX6 87 aa2.34□□□□□ -2.03
VPS35-209ENST00000568642 OR52B6Q8NGF0 335 aa2.34□□□□□ -2.03
VPS35-209ENST00000568642 OR10R2Q8NGX6 335 aa2.34□□□□□ -2.03
VPS35-209ENST00000568642 OR2G2Q8NGZ5 317 aa2.34□□□□□ -2.03
VPS35-209ENST00000568642 OR8U1Q8NH10 309 aa2.34□□□□□ -2.03
VPS35-209ENST00000568642 EEF1AKMT3Q96AZ1 226 aa2.34□□□□□ -2.03
VPS35-209ENST00000568642 PPCDCQ96CD2 204 aa2.34□□□□□ -2.03
VPS35-209ENST00000568642 ZMYND19Q96E35 227 aaPredicted RBP2.34□□□□□ -2.03
VPS35-209ENST00000568642 HSFY1Q96LI6 401 aa2.34□□□□□ -2.03
VPS35-209ENST00000568642 Q96MT0 163 aa2.34□□□□□ -2.03
VPS35-209ENST00000568642 DUX3Q96PT4 197 aa2.34□□□□□ -2.03
VPS35-209ENST00000568642 RHNO1Q9BSD3 238 aa2.34□□□□□ -2.03
VPS35-209ENST00000568642 NMUR2Q9GZQ4 415 aa2.34□□□□□ -2.03
VPS35-209ENST00000568642 ABCG5Q9H222 651 aa2.34□□□□□ -2.03
VPS35-209ENST00000568642 OR51I1Q9H343 314 aa2.34□□□□□ -2.03
VPS35-209ENST00000568642 MAP1LC3AQ9H492 121 aa2.34□□□□□ -2.03
VPS35-209ENST00000568642 VSIRQ9H7M9 311 aa2.34□□□□□ -2.03
VPS35-209ENST00000568642 SIAEQ9HAT2 523 aa2.34□□□□□ -2.03
VPS35-209ENST00000568642 ELL3Q9HB65 397 aaPredicted RBP2.34□□□□□ -2.03
VPS35-209ENST00000568642 SLC2A9Q9NRM0 540 aa2.34□□□□□ -2.03
VPS35-209ENST00000568642 TREM2Q9NZC2 230 aa2.34□□□□□ -2.03
VPS35-209ENST00000568642 SLC7A11Q9UPY5 501 aa2.34□□□□□ -2.03
VPS35-209ENST00000568642 INSL5Q9Y5Q6 135 aa2.34□□□□□ -2.03
VPS35-209ENST00000568642 PLXNA2O75051 1894 aa2.34□□□□□ -2.03
VPS35-209ENST00000568642 ROS1P08922 2347 aa2.34□□□□□ -2.04
VPS35-209ENST00000568642 CITO14578 2027 aa2.34□□□□□ -2.04
VPS35-209ENST00000568642 GTF3C1Q12789 2109 aa2.33□□□□□ -2.04
VPS35-209ENST00000568642 IGLV5-37A0A075B6J1 123 aa2.33□□□□□ -2.04
VPS35-209ENST00000568642 IGLV5-45A0A087WSX0 123 aa2.33□□□□□ -2.04
VPS35-209ENST00000568642 A0A1B0GXF2 115 aa2.33□□□□□ -2.04
VPS35-209ENST00000568642 A0A1W2PNU3 283 aaPredicted RBP2.33□□□□□ -2.04
VPS35-209ENST00000568642 OR6C6A6NF89 314 aa2.33□□□□□ -2.04
VPS35-209ENST00000568642 FAM159BA6NKW6 160 aa2.33□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms