RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 FAM172BPA6NC97 362 aa12.86□□□□□ -0.35
CLN3-229ENST00000567963 LEUTXA8MZ59 168 aa12.86□□□□□ -0.35
CLN3-229ENST00000567963 ZNF44P15621 663 aa12.86□□□□□ -0.35
CLN3-229ENST00000567963 CD34P28906 385 aa12.86□□□□□ -0.35
CLN3-229ENST00000567963 BRS3P32247 399 aa12.86□□□□□ -0.35
CLN3-229ENST00000567963 GDNFP39905 211 aa12.86□□□□□ -0.35
CLN3-229ENST00000567963 CD83Q01151 205 aa12.86□□□□□ -0.35
CLN3-229ENST00000567963 GALEQ14376 348 aa12.86□□□□□ -0.35
CLN3-229ENST00000567963 Q6ZPA2 131 aa12.86□□□□□ -0.35
CLN3-229ENST00000567963 LHFPL3Q86UP9 236 aa12.86□□□□□ -0.35
CLN3-229ENST00000567963 CHST4Q8NCG5 386 aa12.86□□□□□ -0.35
CLN3-229ENST00000567963 OR5AU1Q8NGC0 362 aa12.86□□□□□ -0.35
CLN3-229ENST00000567963 LGALS12Q96DT0 336 aa12.86□□□□□ -0.35
CLN3-229ENST00000567963 AKR1E2Q96JD6 320 aa12.86□□□□□ -0.35
CLN3-229ENST00000567963 LIN7BQ9HAP6 207 aa12.86□□□□□ -0.35
CLN3-229ENST00000567963 NEK6Q9HC98 313 aa12.86□□□□□ -0.35
CLN3-229ENST00000567963 ODAMA1E959 279 aa12.85□□□□□ -0.35
CLN3-229ENST00000567963 H3BNX3 289 aa12.85□□□□□ -0.35
CLN3-229ENST00000567963 SLC33A1O00400 549 aaPredicted RBP12.85□□□□□ -0.35
CLN3-229ENST00000567963 ALX3O95076 343 aa12.85□□□□□ -0.35
CLN3-229ENST00000567963 GABRB1P18505 474 aa12.85□□□□□ -0.35
CLN3-229ENST00000567963 ZP1P60852 638 aa12.85□□□□□ -0.35
CLN3-229ENST00000567963 CDK5R1Q15078 307 aa12.85□□□□□ -0.35
CLN3-229ENST00000567963 KISS1Q15726 138 aa12.85□□□□□ -0.35
CLN3-229ENST00000567963 KRBOX4Q5JUW0 171 aa12.85□□□□□ -0.35
CLN3-229ENST00000567963 SERPINA12Q8IW75 414 aa12.85□□□□□ -0.35
CLN3-229ENST00000567963 OR5D14Q8NGL3 314 aa12.85□□□□□ -0.35
CLN3-229ENST00000567963 MRPL48Q96GC5 212 aaKnown RBP12.85□□□□□ -0.35
CLN3-229ENST00000567963 COQ2Q96H96 371 aa12.85□□□□□ -0.35
CLN3-229ENST00000567963 MYCBPQ99417 103 aaPredicted RBP12.85□□□□□ -0.35
CLN3-229ENST00000567963 ALG8Q9BVK2 526 aa12.85□□□□□ -0.35
CLN3-229ENST00000567963 ISG20L2Q9H9L3 353 aaKnown RBP12.85□□□□□ -0.35
CLN3-229ENST00000567963 ZNF286AQ9HBT8 521 aa12.85□□□□□ -0.35
CLN3-229ENST00000567963 MYRFQ9Y2G1 1151 aa12.85□□□□□ -0.35
CLN3-229ENST00000567963 DNAH3Q8TD57 4116 aa12.85□□□□□ -0.35
CLN3-229ENST00000567963 A0A087X0M5 115 aa12.85□□□□□ -0.35
CLN3-229ENST00000567963 A0A1B0GX30 115 aa12.85□□□□□ -0.35
CLN3-229ENST00000567963 BUB1B-PAK6H3BSN5 160 aa12.85□□□□□ -0.35
CLN3-229ENST00000567963 DEGS1O15121 323 aa12.85□□□□□ -0.35
CLN3-229ENST00000567963 TMEM225BP0DP42 221 aa12.85□□□□□ -0.35
CLN3-229ENST00000567963 PTGFRP43088 359 aa12.85□□□□□ -0.35
CLN3-229ENST00000567963 ARHGDIBP52566 201 aa12.85□□□□□ -0.35
CLN3-229ENST00000567963 C17orf58Q2M2W7 97 aa12.85□□□□□ -0.35
CLN3-229ENST00000567963 HLA-DRB5Q30154 266 aa12.85□□□□□ -0.35
CLN3-229ENST00000567963 CENPVQ7Z7K6 275 aaPredicted RBP12.85□□□□□ -0.35
CLN3-229ENST00000567963 SYS1Q8N2H4 156 aa12.85□□□□□ -0.35
CLN3-229ENST00000567963 PARP16Q8N5Y8 322 aa12.85□□□□□ -0.35
CLN3-229ENST00000567963 OR4D6Q8NGJ1 314 aa12.85□□□□□ -0.35
CLN3-229ENST00000567963 CREB3L1Q96BA8 519 aa12.85□□□□□ -0.35
CLN3-229ENST00000567963 RBM14Q96PK6 669 aaKnown RBP12.85□□□□□ -0.35
CLN3-229ENST00000567963 ZNF649Q9BS31 505 aa12.85□□□□□ -0.35
CLN3-229ENST00000567963 SLC25A33Q9BSK2 321 aa12.85□□□□□ -0.35
CLN3-229ENST00000567963 ING3Q9NXR8 418 aa12.85□□□□□ -0.35
CLN3-229ENST00000567963 ZNF729A6NN14 1252 aaPredicted RBP12.84□□□□□ -0.35
CLN3-229ENST00000567963 LY6LH3BQJ8 138 aa12.84□□□□□ -0.35
CLN3-229ENST00000567963 TOR1AO14656 332 aa12.84□□□□□ -0.35
CLN3-229ENST00000567963 SULT1B1O43704 296 aa12.84□□□□□ -0.35
CLN3-229ENST00000567963 ZFPL1O95159 310 aa12.84□□□□□ -0.35
CLN3-229ENST00000567963 HCKP08631 526 aa12.84□□□□□ -0.35
CLN3-229ENST00000567963 RPSAP08865 295 aaKnown RBP12.84□□□□□ -0.35
CLN3-229ENST00000567963 DBTP11182 482 aaKnown RBP12.84□□□□□ -0.35
CLN3-229ENST00000567963 CEACAM3P40198 252 aa12.84□□□□□ -0.35
CLN3-229ENST00000567963 PRRX1P54821 245 aa12.84□□□□□ -0.35
CLN3-229ENST00000567963 ABCA11PQ4W5N1 156 aa12.84□□□□□ -0.35
CLN3-229ENST00000567963 CBR4Q8N4T8 237 aa12.84□□□□□ -0.35
CLN3-229ENST00000567963 WFDC9Q8NEX5 89 aa12.84□□□□□ -0.35
CLN3-229ENST00000567963 SGCDQ92629 289 aa12.84□□□□□ -0.35
CLN3-229ENST00000567963 NECAP2Q9NVZ3 263 aa12.84□□□□□ -0.35
CLN3-229ENST00000567963 GMPPBQ9Y5P6 360 aa12.84□□□□□ -0.35
CLN3-229ENST00000567963 A0A1W2PRX2 142 aa12.83□□□□□ -0.36
CLN3-229ENST00000567963 ERICH4A6NGS2 130 aa12.83□□□□□ -0.36
CLN3-229ENST00000567963 TMEM212A6NML5 194 aa12.83□□□□□ -0.36
CLN3-229ENST00000567963 PIN1P1O15428 100 aa12.83□□□□□ -0.36
CLN3-229ENST00000567963 OR2F2O95006 317 aa12.83□□□□□ -0.36
CLN3-229ENST00000567963 AMY1AP04745 511 aa12.83□□□□□ -0.36
CLN3-229ENST00000567963 AMY2AP04746 511 aa12.83□□□□□ -0.36
CLN3-229ENST00000567963 LPLP06858 475 aa12.83□□□□□ -0.36
CLN3-229ENST00000567963 CGB3P0DN86 165 aa12.83□□□□□ -0.36
CLN3-229ENST00000567963 CGB7P0DN87 165 aa12.83□□□□□ -0.36
CLN3-229ENST00000567963 MTNR1BP49286 362 aa12.83□□□□□ -0.36
CLN3-229ENST00000567963 ATXN7L3Q14CW9 347 aaPredicted RBP12.83□□□□□ -0.36
CLN3-229ENST00000567963 TCTEX1D4Q5JR98 221 aa12.83□□□□□ -0.36
CLN3-229ENST00000567963 UTF1Q5T230 341 aa12.83□□□□□ -0.36
CLN3-229ENST00000567963 TPTE2P1Q5T6R2 138 aa12.83□□□□□ -0.36
CLN3-229ENST00000567963 ZFP1Q6P2D0 407 aa12.83□□□□□ -0.36
CLN3-229ENST00000567963 OR51T1Q8NGJ9 327 aa12.83□□□□□ -0.36
CLN3-229ENST00000567963 OR5AK2Q8NH90 309 aa12.83□□□□□ -0.36
CLN3-229ENST00000567963 RHOXF1Q8NHV9 184 aa12.83□□□□□ -0.36
CLN3-229ENST00000567963 CAPSLQ8WWF8 208 aa12.83□□□□□ -0.36
CLN3-229ENST00000567963 PHF21AQ96BD5 680 aa12.83□□□□□ -0.36
CLN3-229ENST00000567963 PDCD1LG2Q9BQ51 273 aa12.83□□□□□ -0.36
CLN3-229ENST00000567963 PPIL3Q9H2H8 161 aaKnown RBP12.83□□□□□ -0.36
CLN3-229ENST00000567963 AMBNQ9NP70 447 aa12.83□□□□□ -0.36
CLN3-229ENST00000567963 ERVK13-1Q9NX77 482 aa12.83□□□□□ -0.36
CLN3-229ENST00000567963 OR6C3Q9NZP0 311 aa12.83□□□□□ -0.36
CLN3-229ENST00000567963 KBTBD11-OT1A0A1B0GTJ5 212 aa12.82□□□□□ -0.36
CLN3-229ENST00000567963 E9PI62 339 aa12.82□□□□□ -0.36
CLN3-229ENST00000567963 H0YJX3 145 aa12.82□□□□□ -0.36
CLN3-229ENST00000567963 MPZL2O60487 215 aa12.82□□□□□ -0.36
CLN3-229ENST00000567963 FADS2O95864 444 aaKnown RBP12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms