RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 MBPP02686 304 aaPredicted RBP11.48□□□□□ -0.57
VPS4A-204ENST00000566354 MT-ND4LP03901 98 aa11.48□□□□□ -0.57
VPS4A-204ENST00000566354 SERPINA7P05543 415 aa11.48□□□□□ -0.57
VPS4A-204ENST00000566354 CBR1P16152 277 aa11.48□□□□□ -0.57
VPS4A-204ENST00000566354 MTCP1P56278 107 aa11.48□□□□□ -0.57
VPS4A-204ENST00000566354 MLF1P58340 268 aa11.48□□□□□ -0.57
VPS4A-204ENST00000566354 SNRPEP62304 92 aaKnown RBP11.48□□□□□ -0.57
VPS4A-204ENST00000566354 DCAF10Q5QP82 559 aa11.48□□□□□ -0.57
VPS4A-204ENST00000566354 ZNF468Q5VIY5 522 aaPredicted RBP11.48□□□□□ -0.57
VPS4A-204ENST00000566354 DMRTC2Q8IXT2 367 aaPredicted RBP11.48□□□□□ -0.57
VPS4A-204ENST00000566354 PSMF1Q92530 271 aa11.48□□□□□ -0.57
VPS4A-204ENST00000566354 SPTSSAQ969W0 71 aa11.48□□□□□ -0.57
VPS4A-204ENST00000566354 ERGIC1Q969X5 290 aa11.48□□□□□ -0.57
VPS4A-204ENST00000566354 HIST1H2BAQ96A08 127 aa11.48□□□□□ -0.57
VPS4A-204ENST00000566354 NABP1Q96AH0 204 aa11.48□□□□□ -0.57
VPS4A-204ENST00000566354 SPSB1Q96BD6 273 aa11.48□□□□□ -0.57
VPS4A-204ENST00000566354 ZNF799Q96GE5 643 aa11.48□□□□□ -0.57
VPS4A-204ENST00000566354 HDHD3Q9BSH5 251 aaPredicted RBP11.48□□□□□ -0.57
VPS4A-204ENST00000566354 LUZP4Q9P127 313 aa11.48□□□□□ -0.57
VPS4A-204ENST00000566354 ZNF850A8MQ14 1090 aa11.47□□□□□ -0.57
VPS4A-204ENST00000566354 VAMP5O95183 116 aa11.47□□□□□ -0.57
VPS4A-204ENST00000566354 ZNF728P0DKX0 622 aa11.47□□□□□ -0.57
VPS4A-204ENST00000566354 DTYMKP23919 212 aa11.47□□□□□ -0.57
VPS4A-204ENST00000566354 CEACAM6P40199 344 aa11.47□□□□□ -0.57
VPS4A-204ENST00000566354 SSR4P51571 173 aa11.47□□□□□ -0.57
VPS4A-204ENST00000566354 HGFACQ04756 655 aa11.47□□□□□ -0.57
VPS4A-204ENST00000566354 FOXC1Q12948 553 aa11.47□□□□□ -0.57
VPS4A-204ENST00000566354 HNF4GQ14541 408 aa11.47□□□□□ -0.57
VPS4A-204ENST00000566354 ABCA11PQ4W5N1 156 aa11.47□□□□□ -0.57
VPS4A-204ENST00000566354 MIDNQ504T8 468 aa11.47□□□□□ -0.57
VPS4A-204ENST00000566354 AKIRIN2Q53H80 203 aa11.47□□□□□ -0.57
VPS4A-204ENST00000566354 PHYHD1Q5SRE7 291 aa11.47□□□□□ -0.57
VPS4A-204ENST00000566354 LRRC18Q8N456 261 aa11.47□□□□□ -0.57
VPS4A-204ENST00000566354 ZNF561Q8N587 486 aa11.47□□□□□ -0.57
VPS4A-204ENST00000566354 LRTM2Q8N967 370 aa11.47□□□□□ -0.57
VPS4A-204ENST00000566354 THOC3Q96J01 351 aaKnown RBP11.47□□□□□ -0.57
VPS4A-204ENST00000566354 FAAP24Q9BTP7 215 aa11.47□□□□□ -0.57
VPS4A-204ENST00000566354 SUCNR1Q9BXA5 334 aa11.47□□□□□ -0.57
VPS4A-204ENST00000566354 NAA60Q9H7X0 242 aa11.47□□□□□ -0.57
VPS4A-204ENST00000566354 MYO7BQ6PIF6 2116 aa11.47□□□□□ -0.57
VPS4A-204ENST00000566354 DMXL2Q8TDJ6 3036 aa11.47□□□□□ -0.57
VPS4A-204ENST00000566354 A0A087WZY1 265 aa11.47□□□□□ -0.57
VPS4A-204ENST00000566354 C5orf52A6NGY3 159 aa11.47□□□□□ -0.57
VPS4A-204ENST00000566354 TP53I11O14683 189 aa11.47□□□□□ -0.57
VPS4A-204ENST00000566354 DHHO43323 396 aa11.47□□□□□ -0.57
VPS4A-204ENST00000566354 GPR137BO60478 399 aa11.47□□□□□ -0.57
VPS4A-204ENST00000566354 WT1P19544 449 aaPredicted RBP11.47□□□□□ -0.57
VPS4A-204ENST00000566354 RBP2P50120 134 aa11.47□□□□□ -0.57
VPS4A-204ENST00000566354 RAB5CP51148 216 aa11.47□□□□□ -0.57
VPS4A-204ENST00000566354 TMEM187Q14656 261 aa11.47□□□□□ -0.57
VPS4A-204ENST00000566354 RSU1Q15404 277 aa11.47□□□□□ -0.57
VPS4A-204ENST00000566354 GUK1Q16774 197 aa11.47□□□□□ -0.57
VPS4A-204ENST00000566354 PRAMEF20Q5VT98 475 aa11.47□□□□□ -0.57
VPS4A-204ENST00000566354 SLC16A13Q7RTY0 426 aa11.47□□□□□ -0.57
VPS4A-204ENST00000566354 RTN4IP1Q8WWV3 396 aaPredicted RBP11.47□□□□□ -0.57
VPS4A-204ENST00000566354 GINS3Q9BRX5 216 aa11.47□□□□□ -0.57
VPS4A-204ENST00000566354 RBM24Q9BX46 236 aaKnown RBP11.47□□□□□ -0.57
VPS4A-204ENST00000566354 LIME1Q9H400 295 aa11.47□□□□□ -0.57
VPS4A-204ENST00000566354 RGCCQ9H4X1 137 aa11.47□□□□□ -0.57
VPS4A-204ENST00000566354 PLEK2Q9NYT0 353 aa11.47□□□□□ -0.57
VPS4A-204ENST00000566354 CHCHD2Q9Y6H1 151 aaPredicted RBP11.47□□□□□ -0.57
VPS4A-204ENST00000566354 APC2O95996 2303 aa11.46□□□□□ -0.57
VPS4A-204ENST00000566354 P2RY1P47900 373 aa11.46□□□□□ -0.57
VPS4A-204ENST00000566354 FOXO1Q12778 655 aa11.46□□□□□ -0.57
VPS4A-204ENST00000566354 MAJINQ3KP22 176 aa11.46□□□□□ -0.57
VPS4A-204ENST00000566354 TMEM156Q8N614 296 aa11.46□□□□□ -0.57
VPS4A-204ENST00000566354 SCRT1Q9BWW7 348 aa11.46□□□□□ -0.57
VPS4A-204ENST00000566354 ANGPTL4Q9BY76 406 aa11.46□□□□□ -0.57
VPS4A-204ENST00000566354 PARP12Q9H0J9 701 aaKnown RBP11.46□□□□□ -0.57
VPS4A-204ENST00000566354 METTL1Q9UBP6 276 aaKnown RBP11.46□□□□□ -0.57
VPS4A-204ENST00000566354 AK3Q9UIJ7 227 aa11.46□□□□□ -0.57
VPS4A-204ENST00000566354 MED12Q93074 2177 aa11.46□□□□□ -0.58
VPS4A-204ENST00000566354 C7orf77A4D0Y5 90 aa11.46□□□□□ -0.58
VPS4A-204ENST00000566354 NPIPA2E9PIF3 369 aa11.46□□□□□ -0.58
VPS4A-204ENST00000566354 NPIPA3F8WFD2 350 aa11.46□□□□□ -0.58
VPS4A-204ENST00000566354 H7C1Q1 480 aa11.46□□□□□ -0.58
VPS4A-204ENST00000566354 MSTNO14793 375 aa11.46□□□□□ -0.58
VPS4A-204ENST00000566354 NKX2-8O15522 239 aa11.46□□□□□ -0.58
VPS4A-204ENST00000566354 CBR3O75828 277 aa11.46□□□□□ -0.58
VPS4A-204ENST00000566354 DBHP09172 617 aa11.46□□□□□ -0.58
VPS4A-204ENST00000566354 OR5AC1P0C628 307 aa11.46□□□□□ -0.58
VPS4A-204ENST00000566354 ZNF44P15621 663 aa11.46□□□□□ -0.58
VPS4A-204ENST00000566354 PMELP40967 661 aa11.46□□□□□ -0.58
VPS4A-204ENST00000566354 RRADP55042 308 aa11.46□□□□□ -0.58
VPS4A-204ENST00000566354 ZNF616Q08AN1 781 aa11.46□□□□□ -0.58
VPS4A-204ENST00000566354 TAF9Q16594 264 aa11.46□□□□□ -0.58
VPS4A-204ENST00000566354 SP6Q3SY56 376 aa11.46□□□□□ -0.58
VPS4A-204ENST00000566354 ACER2Q5QJU3 275 aa11.46□□□□□ -0.58
VPS4A-204ENST00000566354 TOMM40LQ969M1 308 aa11.46□□□□□ -0.58
VPS4A-204ENST00000566354 ZNF385AQ96PM9 386 aaKnown RBP11.46□□□□□ -0.58
VPS4A-204ENST00000566354 EIF5A2Q9GZV4 153 aaKnown RBP11.46□□□□□ -0.58
VPS4A-204ENST00000566354 SPACA1Q9HBV2 294 aa11.46□□□□□ -0.58
VPS4A-204ENST00000566354 GPR173Q9NS66 373 aa11.46□□□□□ -0.58
VPS4A-204ENST00000566354 STRAPQ9Y3F4 350 aaKnown RBP11.46□□□□□ -0.58
VPS4A-204ENST00000566354 ACACAQ13085 2346 aa11.45□□□□□ -0.58
VPS4A-204ENST00000566354 TRBV23-1A0A0A0MS06 115 aa11.45□□□□□ -0.58
VPS4A-204ENST00000566354 F10P00742 488 aa11.45□□□□□ -0.58
VPS4A-204ENST00000566354 AGAP20933 346 aa11.45□□□□□ -0.58
VPS4A-204ENST00000566354 OPRM1P35372 400 aa11.45□□□□□ -0.58
VPS4A-204ENST00000566354 AKR1C3P42330 323 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms